<p>This report analyzes the needs to build an annual report generator which has the properties of</p><p>Modularity, Simplicity in use and Maintainability based on current web technology. It also describes</p><p>the software development process from design to implementation. The description is goal criteria based</p><p>so it explains the advantages of the developed annual report generator. This report also discusses the</p><p>further works that can be done in the future and their regarding implementation difficulties.</p>

Doctor of Philosophy / Department of Horticulture, Forestry, and Recreation Resources / Jason Griffin / Feeding preference experiments with the pine sawyer beetle (Monochamus carolinensis Olivier) were conducted using eleven taxa of Pinaceae. One newly emerged adult beetle (≤ 24 hours) was placed into each feeding arena (n = 124) containing three or four shoots of current season's growth from different tree species (one shoot per species) for choice experiments. Beetles were allowed to feed for 48 (2011) or 72 (2012-2014) hours, at which point shoots were removed and data collected on feeding occurrence and percent feeding area. Augmented design analyses of feeding occurrence and percent feeding area of the eleven taxa did not indicate significant evidence for feeding preferences of the pine sawyer beetle on most taxa except for a higher preference for both scots (Pinus sylvestris L.) and eastern white (P. strobus L.) pines compared to deodar cedar [Cedrus deodara (Roxb. ex D. Don) G. Don]. The feeding preference experiments suggest that pine sawyer beetle may feed on a wide-range of Pinaceae taxa. Virtual plant walk maps were developed using a web-application for two semesters of an ornamental plant identification course (n = 87). The maps allowed students to revisit plants and information covered in lecture and laboratory sections at their own convenience, using either a computer or mobile device. Survey results indicated 63% of the students used the virtual plant walk maps as a study resource. Students mainly used the maps to study the most current plant list. Most students who used the virtual maps did so to review the plants online. When asked to rate usefulness of the maps on a scale from slightly useful (1) to very useful (3), 43% of students indicated that the virtual maps study tool was very useful, 25% indicated the maps were useful, and 8% indicated that the maps were slightly useful. A significant dependence between student use frequency and student usefulness ratings of virtual plant walk maps was observed. As students’ use of the virtual maps increased, they perceived the maps to be more useful to their studies in preparing for identification quizzes. No differences between plant identification quiz scores were observed between students who used and did not use the virtual plant walk maps or between learning styles. Our survey indicated students used the virtual plant walk maps as a resource and perceived the maps as a useful tool in preparation for identification quizzes.

The last three decades has seen the successful development of many high-throughput technologies that have revolutionised and transformed biological research. The application of these technologies has generated large quantities of data allowing new approaches to analyze and integrate these data, which now constitute the field of Systems Biology. Systems Biology aims to enable a holistic understanding of a biological system by mapping interactions between all the biochemical components within the system. This requires integration of interdisciplinary data and knowledge to comprehensively explore the various biological processes of a system. Ontologies in biology (bio-ontologies) and the Semantic Web are playing an increasingly important role in the integration of data and knowledge by offering an explicit, unambiguous and rich representation mechanism. This increased influence led to the proposal of the Semantic Systems Biology paradigm to complement the techniques currently used in Systems Biology. Semantic Systems Biology provides a semantic description of the knowledge about the biological systems on the whole facilitating data integration, knowledge management, reasoning and querying. However, this approach is still a typical product of technology push, offering potential users access to the new technology. This doctoral thesis presents the work performed to bring Semantic Systems Biology closer to biological domain experts. The work covers a variety of aspects of Semantic Systems Biology: The Gene eXpression Knowledge Base is a resource that captures knowledge on gene expression. The knowledge base exploits the power of seamless data integration offered by the semantic web technologies to build large networks of varied datasets, capable of answering complex biological questions. The knowledge base is the result of the active collaboration with the Gastrin Systems Biology group here at the Norwegian University of Science and Technology. This resource was customised by the integration of additional data sets on users’ request. Additionally, the utility of the knowledge base is demonstrated by the conversion of biological questions into computable queries. The joint analysis of the query results has helped in filling knowledge gaps in the biological system of study. Biologists often use different bioinformatics tools to conduct complex biological analysis. However, using these tools frequently poses a steep learning curve for the life science researchers. Therefore, the thesis describes ONTO-ToolKit, a plug-in that allows biologists to exploit bio-ontology based analysis as part of biological workflows in Galaxy. ONTO-ToolKit allows users to perform ontology-based analysis to improve the depth of their overall analysis Visualisation plays a key role in aiding users understand and grasp the knowledge represented in bio-ontologies. To this end, OLSVis, a web application was developed to make ontology browsing intuitive and flexible. Finally, the steps needed to further advance the Semantic Systems Biology approach has been discussed. / Semantic Systems Biology

This report analyzes the needs to build an annual report generator which has the properties of Modularity, Simplicity in use and Maintainability based on current web technology. It also describes the software development process from design to implementation. The description is goal criteria based so it explains the advantages of the developed annual report generator. This report also discusses the further works that can be done in the future and their regarding implementation difficulties.

Advancements in web technology such as the integration of operating platforms, the application of mobile applets and connectivity with databases into an encompassing web environment has promoted the development of complex web-based systems for enterprise computing. In this integration the inherent security flaws and associated problems of these technological advancements are also brought together under this web environment. These flaws, when exploited, could lead to system compromises of various kinds including stealing of security sensitive information, system take-over fabrication of fake electronic documents and illegal alteration to web sites contents. Therefore, the successful, prompt and appropriate responses of these complex web-based systems to security threats and breaches, such as in the cases of document tampering and misrepresentation from illegal users, are imperative in promoting the user's willingness and confidence when interacting with these systems. Accordingly, this has become one of the major concerns in development, management and operation of web-based systems. This thesis also studies the authentication of dynamic web contents through the application of a one-time digital signature. To this effect, relevant concepts and possible approaches have been discussed. Authentication and verification of dynamic contents, efficiently in the web environment, is suggested as a separate research area and as a direction for future work. / Master of Science (Honours) Computing

The thesis is an empirical case study to predict or estimate the performance and variability of contemporary software frameworks used for web application development. Thesis can be mainly divided into 3 phases. In Phase I, we theoretically try to explore and analyze PHP, EJB 3.0 and ASP.NET considering quality attributes or ilitis of mentioned technologies. In Phase II, we develop two identical web applications i.e. online component’s webstore (applications to purchase components online) in PHP and ASP.NET. In phase III, we conduct automated testing to determine and analyze applications’ performance. We developed web applications in PHP 5.3.0 and Visual Studio 2008 using ASP.NET 3.5 to practically measure and compare the applications’ performance. We used SQL Server 2005 with ASP.NET 3.5 and MySql 5.1.36 with PHP as database servers. Software architecture, CSS, database design, database constraints were tried to keep simple and same for both applications i.e.  Applications developed in PHP and ASP.NET. This similarity helps to establish realistic comparison of applications performance and variability. The applications’ performance and variability is measured with help of automated scripts. These scripts were used to generate thousands of requests on application servers and downloading components simultaneously. More details of performance testing can be found in chapter 6, 7 and 8. / We have gain alot of knowledge from this thesis. We are very happy to finish our Software Engineering.

This work is about achieving fault tolerance in real-time groupware implemented for theweb. These systems are often implemented using an architecture that involves a single pointof failure. The problem is the lack of solutions that solve this problem that can easily beapplied to implementations. The question is whether such a solution can be created and howit would perform. Some research has previously been conducted on this subject; however,the solutions proposed often have significant weaknesses and lack published results on howreliable the solutions actually are. In this work, a new solution is created and presented,which does not include the weaknesses as the previously suggested solutions. An experimentis conducted involving the implementation of a groupware application using common webtechnologies with the proposed solution applied and running simulations with fault injectionas to measure to what degree the solution is able to tolerate faults in different scenarios. Theresults show that the solution is able to achieve a higher fault tolerance.

This thesis explores the development of desktop applications using Adobe AIR (Adobe Itegrated Runtime) technology. Applications like these are based on web technologies but they do not have such restricted access to resources of operating system as web applications. Moreover, it is possible to install these applications on various operating systems without the need of their previous compilation for a specific operating platform. Apart from describing technologies used for developing AIR applications, this thesis also presents an application which is used for testing the possibilities and features that AIR technology offers.

This thesis deals with implementation of software support of alarm system design for security levels 1 and 2 based on web technologies. It was created intuitive and interactive graphical interface that allows to create high-quality alarm system design even for laymen. First of all the paper deals with standards and jurisdictions in the Czech Republic, according to which the alarm system design must be followed. In theoretical part there are described in detail characteristics of alarm systems and its components, proper functioning principles, installation principle, advantages and disadvantages of use, individual steps of alarm system design and proposed methodology of alarm system design for security level 1 and 2. In practical part there are described the technologies used for the implementation of this paper, structure of created webpage and detailed steps of alarm system design, as seen by user during creating. The result of this paper is a webpage, which is divided into two parts: theoretical and practical. The theoretical part provides information about the alarm system architecture, alarm system design and established methodology for the alarm system design for security level 1 and 2. In the practical part the user, on the basis of gained information and interactive help, can create high-quality alarm system design that meets all the conditions for reliable function in real traffic.

A tecnologia Web foi criada como forma de divulgar o conhecimento científico, mas tem sido utilizada também como mecanismo de acesso a vários tipos de sistemas de informação empresariais assim como de comunicação entre eles, gerando diversas oportunidades de negócios para as organizações. Os sistemas de informação baseados na tecnologia Web (SIW) possuem características que permitem supor que seu desenvolvimento apresenta diferenças com relação ao de sistemas não Web. O objetivo desta pesquisa foi levantar, através de um estudo exploratório de múltiplos casos, as questões relevantes ao desenvolvimento de sistemas de informação baseados na tecnologia Web que apóiam aplicações de negócios nas organizações. Para tanto, procuramos identificar as principais dificuldades e facilidades, as alterações sucedidas nas tarefas e na estrutura do desenvolvimento, assim como analisar a adoção de técnicas e metodologias. Esperamos ter contribuído para que as organizações possam aprimorar o desenvolvimento de SIW de forma a aproveitar ao máximo as oportunidades criadas pela tecnologia Web. / The Web technology was created to divulge the scientific knowledge, although it has been used as a way to access several types of business information systems as well as to facilitate the communication between them, generating many business opportunities for the organizations. Web-based information systems (WIS) have characteristics that allow us to assume their development is different from non-Web information systems. The objective of this research was to identify, through an exploratory multi-case study, the main questions about business Web-based information systems development. We have tried to identify the main difficulties and easiness, the changes occurred in development tasks and structure, and to analyze techniques and methodologies adoption. We hope we had contributed to allow organizations be able to improve the WIS development process in order to take the maximum advantage of the opportunities generated by Web technology.