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Micro Western blotting by dip-pen electrophoresis in capillaries.January 2011 (has links)
Liu , Huan. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2011. / Includes bibliographical references (leaves 43-45). / Abstracts in English and Chinese. / Abstract --- p.i / 摘要 --- p.iii / Acknowledgement --- p.iv / Table of contents --- p.vi / Chapter Chapter 1 --- Introduction --- p.1 / Chapter 1.1 --- Gel electrophoresis of proteins --- p.1 / Chapter 1.1.1 --- Principles of gel electrophoresis --- p.1 / Chapter 1.1.2 --- Polyacrylamide gel --- p.3 / Chapter 1.1.3 --- Buffer systems --- p.5 / Chapter 1.1.4 --- Capillary electrophoresis --- p.6 / Chapter 1.2 --- Methods to transfer proteins from gel to membrane --- p.7 / Chapter 1.2.1 --- Simple diffusion --- p.8 / Chapter 1.2.2 --- Ultrasound transfer --- p.8 / Chapter 1.2.3 --- Tank transfer --- p.9 / Chapter 1.2.4 --- Semidry transfer --- p.9 / Chapter 1.2.5 --- Transfer efficiency improvements --- p.10 / Chapter 1.3 --- Visualizing immunoblots --- p.11 / Chapter 1.3.1 --- Membrane staining --- p.11 / Chapter 1.3.2 --- Radiometric detection in blotting --- p.12 / Chapter 1.3.3 --- Bioluminescence-enhanced detection --- p.13 / Chapter 1.3.4 --- Chemiluminescence-enhanced detection --- p.14 / Chapter 1.4 --- Miniaturized electrophoresis and blotting methods --- p.15 / Chapter 1.5 --- Objective of the project --- p.18 / Chapter Chapter 2 --- Dip-pen gel electrophoresis in capillaries --- p.20 / Chapter 2.1 --- Introduction --- p.20 / Chapter 2.2 --- Experimental section --- p.21 / Chapter 2.2.1 --- Materials and reagents --- p.21 / Chapter 2.2.2 --- PA gel fabrication in capillary --- p.22 / Chapter 2.2.3 --- Setup for electrophoresis in capillary --- p.23 / Chapter 2.3 --- Results and discussion --- p.24 / Chapter 2.3.1 --- PA gel polymerization quality at tip --- p.24 / Chapter 2.3.2 --- Separation efficiency in capillary --- p.25 / Chapter 2.4 --- Conclusions --- p.27 / Chapter Chapter 3 --- Western blotting by dip-pen electrophoresis --- p.28 / Chapter 3.1 --- Introduction --- p.28 / Chapter 3.2 --- Experimental section --- p.30 / Chapter 3.2.1 --- Materials and reagents --- p.30 / Chapter 3.2.2 --- Protein sample preparation --- p.31 / Chapter 3.2.3 --- Dip-pen electrophoresis based Western blot --- p.31 / Chapter 3.2.4 --- Detection on membrane --- p.32 / Chapter 3.3 --- Results and discussion --- p.33 / Chapter 3.3.1 --- Separation performance on nitrocellulose membrane --- p.33 / Chapter 3.3.2 --- Comparison among different %T PA gel --- p.34 / Chapter 3.3.3 --- SDS-protein complexes capture and immunoblotting --- p.38 / Chapter 3.4 --- Conclusions --- p.39 / Chapter Chapter 4 --- Conclusions --- p.40 / Chapter 4.1 --- Summary --- p.40 / Chapter 4.2 --- Future perspective --- p.41 / References --- p.43
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Développement de tests de diagnostic in vitro appliqués au sérodiagnostic des infections fongiques par western blot et immunochromatographie / Development of in vitro diagnostic test applied to the diagnosis of fungal infections by western blot and immunochromatographyPiarroux, Raphaël 19 December 2018 (has links)
Le champignon microscopique Aspergillus fumigatus provoque un nombre important de maladies graves. Parmi elles, l’aspergillose pulmonaire chronique (APC) et l’aspergillose broncho-pulmonaire allergique (ABPA) affectent 3 et 4,8 millions de personnes dans le monde, respectivement.L’APC est très souvent mortelle si elle n’est pas soignée. Elle se développe très souvent après une tuberculose. C’est donc une maladie des pays émergents, où il n’est souvent pas possible de la diagnostiquer à cause du coût trop important des techniques existantes.L’ABPA est une complication très grave de l’asthme et de la mucoviscidose, qui complique fortement ces maladies. Elle est très difficile à diagnostiquer.Notre travail a donc consisté à développer et évaluer deux tests, un test rapide permettant de poser le diagnostic d’APC sans avoir à utiliser de matériel de laboratoire à destination des pays émergents et un western blot qui permet la confirmation du diagnostic d’ABPA. / Aspergillus fumigatus is a microscopic fungus that can cause numerous diseases. Among them, chronic pulmonary aspergillosis (CPA) and allergic broncho-pulmonary aspergilloses (ABPA) affect 3 and 4.8 million people, respectively.CPA is often fatal if left untreated. It is often a complication of tuberculosis and therefore affect low and middle income countries. However, it is difficult to diagnose it in those countries, as the tests are too expansive.ABPA is a severe complication of asthma and cystic fibrosis, worsening those diseases. It’s very hard to diagnose it.Our work was to develop and evaluate two tests, a rapid test for the diagnosis of CPA that does not require laboratory equipment designed for low and middle income countries and a western blot for confirmation of ABPA diagnosis.
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Value of perennial pasture phases in dryland agricultural systems of the eastern-central wheat belt of Western AustraliaDoole, Graeme John January 2007 (has links)
Over the past thirty years, price relativities and technological development have motivated an increase in the area of land allocated to cropping, as opposed to pasture production, throughout the central wheat belt of Western Australia. Nevertheless, reducing the proportion of pasture in these rotations has challenged the future productivity of farming systems in this area. First, the frequent application of selective herbicides for weed control in extended cropping rotations has promoted the development of herbicide resistance in a number of major agricultural weeds. Second, the primary use of annual plants has promoted the development of soil salinisation by allowing a significant proportion of rainfall to recharge saline water tables. The inclusion of perennial pasture phases between extended periods of cropping may mitigate or delay these constraints to production through (a) allowing the use of costeffective forms of non-selective weed control, and (b) through creating a buffer of dry soil that absorbs leakage occurring beneath subsequent crops. This study consequently explores the value of including perennial pasture phases in dryland agricultural systems in the eastern-central wheat belt of Western Australia, accounting for benefits related to herbicide resistance and water table management. A novel computational algorithm for the solution of multiple-phase optimal control problems is developed and used to conduct a conceptual analysis of the value of lucerne (Medicago sativa L.) pasture for managing annual ryegrass (Lolium rigidum Gaudin), the primary weed in wheat belt cropping systems. The competitiveness and fecundity of annual ryegrass provide strong economic incentives to maintain a low weed population, irrespective of herbicide-resistance status. Consequently, the ineffectiveness of selective herbicides primarily reduces the profitability of cropping by motivating the adoption of more costly non-selective forms of weed control. The inclusion of lucerne in land-use rotations is only optimal in the presence of severe herbicide resistance given (a) the low efficiency of alternative weed-management practices available during the pasture phase, relative to selective-herbicide application; (b) the significant cost of establishing this perennial pasture; and (c) the high relative profitability of cereal production in the absence of resistance. The value of lucerne, relative to annual pastures, for weed management is explored in greater detail through the use of compressed annealing to optimise a sophisticated simulation model. The profitability of candidate rotations is also manipulated to account for the long-term production losses accruing to the recharge of saline groundwaters that occurs beneath them. Sequences incorporating lucerne are only more profitable than those that include annual pasture at the standard set of parameter values if (a) annual ryegrass is resistant to all selective herbicides, (b) the water table is so shallow (approximately less than 3.5 m deep) that frequent rotation with perennials is required to avert soil salinisation, or (c) sheep production is highly profitable. The value of perennial pasture is sufficient under these circumstances to overcome its high establishment cost. Consistent with intuition, these benefits are reinforced by lower discount rates and higher rates of leakage occurring beneath annual-based systems. Formulation of an effective communication strategy to report these results to producers is justified given the complexity involved in determining the true magnitude of these intertemporal benefits through alternative means, such as field trials.
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Potential utilization of western juniper residuesSichamba, Kennedy 15 March 2012 (has links)
Logging and forest thinning operations generate large amounts of residues in the
form of small trees, branches and foliage that are usually left on the ground to decay or
are burned. These resources are readily available, but it is uneconomical to remove
them from the forest. The potential utilization of these resources was investigated for
western juniper. This species is invading rangeland in the Interior West, altering the
ecology of the land, and farmers are being encouraged to remove it. However, limited
markets for the wood make removal costly. Developing uses for other parts of the stem
could make removal more economically attractive. Western juniper foliage and twigs
were steam distilled to obtain essential oils which were tested for their activity against
subterranean termites and fungi. Residues from the steam distillation were pretreated
with dilute sulfuric acid and digested with enzymes to determine their digestibility. The
goal was to determine if an integrated operation involving steam distillation to remove
essential oils, followed by enzymatic digestion of extraction residues was feasible. Essential oil recovery from foliage averaged 0.77% wet weight, while yields from twigs were about 0.13% wet weight. Foliage essential oil showed high antifungal and termiticidal activities at the concentrations tested. Total sugar yields from foliage extraction residues (40-55%) were higher than those obtained from branchwood residues (15-25%). The highest yields were obtained at 121°C and 1 hour pretreatment in 1% sulfuric acid. These results show that an integrated operation involving steam distillation of western juniper foliage to remove essential oil and enzymatic digestion of extraction residues is technically feasible. Additional work to determine the optimum distillation and pretreatment conditions for foliage would be needed. / Graduation date: 2012
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Sampling and management of garden symphylans (Scutigerella immaculata Newport) in western OregonUmble, Jon R. 25 October 2002 (has links)
Garden symphylans (Scutigerella immaculata Newport) are increasingly
important pests of below-ground parts of over 100 crops in Oregon. The focus of
our work was to improve S. immaculata management through 1) development of a
bait sampling method, 2) examination of the susceptibility of selected crops to S.
immaculata feeding in the field and laboratory and a reanalysis of previously
published results, and 3) investigation of the suitability of selected crops and soil
for the development of S. immaculata populations in the field and laboratory.
Sample size requirements were developed for the bait and soil sampling
methods. Estimating densities of 1 to 20 S. immaculata at fixed precision levels
required 1.5 times more sample units for the baiting method than the soil method.
Sampling recommendations for the baiting method performed well when validated
by resampling a large independent data set. The bait sampling method provides an
effective reliable alternative to the standard soil sampling method.
In the laboratory, as S. immaculata densities increased, dry weight of
spinach (Spinacia oleracea L.) and tomato (Lycopersicon esculentum L.) seedlings
were significantly reduced from 85 to 89%, whereas corn (Zea mays L.) and potato
(Solanum tuberosum L.) dry weight were not reduced. As S. immaculata densities
increased in the field, the normalized difference vegetation index (NDVI) of squash
(Cucurbita pepo L.) and broccoli (Brassica oleracea L.) crops sharply decreased,
while the NDVI of corn and potato crops was only slightly reduced. In reanalysis
of previously published data, the stand counts of crops seeded into S. immaculata
infested soil appeared to increase as seed size increased. These findings will be
used to help develop action thresholds and sample size requirements, and reduce S.
immaculata damage.
In the laboratory, S. immaculata population growth was significantly
greater on spinach than on tomato, sweet corn, potato, or soil alone, and
significantly lower on potato than on spinach, corn, tomato, or soil alone. In the
field, greater S. immaculata population decreases were observed in potatoes than in
sweet corn or clean fallow. These results provide strong evidence that crop rotation
may significantly influence S. immaculata population levels. / Graduation date: 2003
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Relative competitive abilities of several common forest species and planted Douglas-fir in western OregonNaylor-Murphy, Lanea 15 August 2012 (has links)
In terms of production forestry, more often than not any species that is not the crop
species is considered a competitor as they are using finite growing resources that would
otherwise be available to the crop species. With specific regard to Douglas-fir
(Pseudotsuga menziesii (Mirb.) Franco) production in the Pacific Northwest, this study
evaluated an array of morphological and physiological plant attributes to discern the
relative competitive abilities of several common forest species and planted Douglas-fir in
western Oregon during the first year of plantation establishment in the presence and
absence of vegetation management treatments. The competitive ability of a species refers
to the morphological and physiological characteristics associated with resource
acquisition and internal allocation; a concept lacking a specific metric for evaluation. A
conceptual model of plant resource utilization including proxy metrics for key
aboveground plant-environment interactions was used a framework for synthetic
assessment of species relative competitive ability. The relative competitive abilities of
species were evaluated over a summer growing season with assessments of saturated
specific leaf area (SLA[subscript SAT]) and saturated leaf dry matter content (LDMC[subscript SAT]), diurnal and
seasonal leaf-level gas exchange (net photosynthesis (P[subscript n]), stomatal conductance (G[subscript s]), and
derived instantaneous water-use efficiency (WUE)), midday leaf xylem pressure potential
(��[subscript md]), aboveground proportional allocation of biomass into stem, leaf, and reproductive
body components, leaf area index (LAI), and morphological development and growth
(height, crown radius, and diameter and bud density for Douglas-fir).
The study employed a complete randomized block design (RCBD) with four replicates
(blocks) and three vegetation management treatment regimes: untreated control (C), site
preparation only (SP), and site preparation with a spring and summer release (SP+R).
The relative competitive ability of all species was evaluated in the C, whereas only
dominant competitor species remained for evaluation in the SP treatment. Vegetation
treatment effects were evaluated among remaining competitor species and Douglas-fir in
the C and SP treatments, whereas the response of Douglas-fir was assessed across all
three vegetation management treatments (C, SP, SP+R). Selected forest competitor
species included two woody perennial shrubs, two ferns, one herbaceous dicot, and two
herbaceous graminoid species: trailing blackberry (Rubus ursinus Cham. & Schlecht),
snowberry (Symphoricarpos albus (L.) Blake), swordfern (Polystichum munitum
(Kaulfuss) K. Presl), bracken fern (Pteridium aquilinum (L.) Kuhn), woodland groundsel
(Senecio sylvaticus L.), California brome (Bromus carinatus Hook. & Arn.), and false
brome (Brachypodium sylvaticum (Huds.) Beauv). Forest competitor species evaluated
in the SP treatment were limited to trailing blackberry, swordfern, woodland groundsel,
and California brome.
Species relative competitive ability varied dramatically. However, similarities related to
herbaceous and woody life forms were observed. Based on both univariate and
multivariate response variable analyses, the relative competitive abilities of species
examined in the study were ranked as follows: woodland groundsel > false brome >
California brome > trailing blackberry = bracken fern > snowberry > swordfern >
Douglas-fir.
Although vegetation treatments effectively reduced total cover below 20%, a threshold of
putative importance, with observed effects on soil moisture content and species
performance, species relative competitive ability remained unchanged. Physiological
responses were more variable than morphological responses for species performance and
expressed greater sensitivity to vegetation treatment. Vegetation treatment effects were
most pronounced for Douglas-fir in the SP+R treatment where mean total cover was
6.5%. In the SP+R treatment Douglas-fir exhibited decreased moisture stress coupled
with significant increases in both diurnal and seasonal P[subscript n] and G[subscript s] rates and patterns. / Graduation date: 2013
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Juniper utilization : issues of chemistry and management /Swartley, D. Benjamin. January 2002 (has links)
Thesis (M.S.)--Oregon State University, 2003. / Typescript (photocopy). Includes bibliographical references (leaves 97-103). Also available on the World Wide Web.
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Studies of nitrogen fixation, nodule structure and nodule mineral distribution in the tribe PsoraleaeKanu, Sheku Alfred. January 2011 (has links)
Thesis (DTech. degree in Crop Sciences) -- Tshwane University of Technology, 2011. / The genus Psoralea (tribe Psoraleae, family Leguminosae) is indigenous to the Cape Fynbos of South Africa and consists of 50 species that occupy different habitats, ranging from well-drained upland soils to creeks and permanent wetlands. However, little is known about their symbiosis, associated microsymbionts and or adaptation to the nutrient-poor, sandy, acidic soils of the Cape Fynbos. This study is the first to report the presence of calcium oxalate crystals in the outer cortex of P. pinnata and the occurrence of alkali and rare earth elements such as Sr, Rb, Zr and Y in tissue components of N2-fixing nodules (with unknown roles/functions).
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Problems and needs of educational administration in Western Nigeria.Iziren, Omokhagbo. January 1965 (has links)
From the mid-nineteenth century until 1952, education in Nigeria was largely the responsibility of religious denominations. But in 1952 the control of education passed to Regional Governments who then began to participate on a large-scale in educational matters. The Western Nigeria Government led the way with a Universal Free Primary Education scheme launched in January, 1955. [...]
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Needs assessment : a survey of Western Canada’s program administrators’ perspectives of the role of EAPs in the workplaceRodriguez, Javier 05 1900 (has links)
The purpose of this study was to assess the needs of employees in regard to
their Employee Assistance Programs (EAPs) according to the program
administrators' perspective. Information was collected from 62 program
administrators within 54 organizations across Western Canada using a self-administered
questionnaire. The 132-item questionnaire included demographic
information and ten sections devoted to elicit administrators' perspectives on
employees' needs (prevalence of problems, severity of problems, barriers to
EAP utilization, program awareness, prevention programs, training and
information for supervisors and union representatives, personal problems and
the workplace, the role of the EAP in the workplace, the role of the EAP provider
in the workplace, and a general overview).
Results show that administrators perceive a greater prevalence and severity
of problems than EAP utilization. There is also a perceived large EAP support
among its participants (i.e., senior management, supervisors, union
representatives, employees) as a relevant means to address employees' and
their family members' problems. The outcome of the study indicates as well that
personal and family members' problems affect employees and the workplace in
a very significant way. Administrators believe that the EAP is a very important
resource to deal with such problems. Additionally, results point out the important
need for providing employees with information and prevention programs that
may equip them with particular resources to address their problems before they
affect them at work.
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