Thesis (MSc)--Stellenbosch University, 2003. / ENGLISH ABSTRACT: Apple (Malus x domestica Borkh.) is an important horticultural crop worldwide and in the Western Cape. The income generated from apple and other deciduous fruit production amounts to approximately 25% of the gross total value of horticultural production in the Western Cape. Unfortunately diseases and pests adversely affect fruit production in this region. Woolly apple aphids (Eriosoma lanigerum L. (Hausmann» have a significant effect on the apple industry in the Western Cape. Damage caused is two-fold, occurring aerially and terrestrially. Insects colonise the plants, feeding off the phloem sap. Aphid infestation around the root system results in repeated infestation of the foliage as it serves as a reservoir of aphids. In extreme cases, the apple cores are also infested, thus affecting the sale of apples. In 1962, Northern Spy was identified as a woolly apple aphid resistant rootstock and has since then formed the basis for traditional rootstock breeding programmes. The Er1 gene in Northern Spy confers resistance. According to one report, the natural resistance of Northern Spy was overcome in South Africa in 1968, but this was not confirmed in an independent study. The main objectives of this study was to firstly identify molecular markers more closely linked to the woolly apple aphid resistance gene, Er1, than existing markers, by applying AFLP technology to selected seedlings, identified to be resistant by conventional phenotyping. If identified, these markers can be incorporated into existing breeding programmes. Secondly, previously identified RAPD and SCAR markers were tested to determine their applicability in local populations for use in breeding programmes. Ultimately the segregation of the Er1 gene in South African populations can be determined if tightly linked markers are identified. Three families were derived from crosses of each of three resistant genotypes, namely Northern Spy, Rootstock 5 and Russian Seedling and a susceptible cultivar, Braeburn. For the three successive years of the study, each resistant genotype was allowed to cross-pollinate in isolation with the susceptible parent. Two hand-pollinated families, Russian Seedling x Liberty and Russian Seedling x Northern Spy, were also included in the study. The amplified fragment length polymorphism (AFLP) technique was used in an attempt to identify markers in the resistant and susceptible seedlings. No markers were identified using this technique. Known sequence characterised amplified regions (SCAR) and random amplified polymorphic DNA (RAPD) markers were used due to their suitability in marker-assisted selection for woolly apple aphid resistance. Varying results were obtained with these markers and no conclusive information was acquired with regard to the segregation of the Er] gene in any of these rootstocks and crosses. This underlines the need for the development of markers that can readily be applied in local breeding programmes. The identification and integration of such markers will greatly benefit the local and world wide apple industries. / AFRIKAANSE OPSOMMING: Appels (Malus x domestica Borkh.) is wêreldwyd en in die Wes-Kaap 'n belangrike landbougewas. Inkomste gegenereer deur appels en ander sagtevrugte vorm bykans 25% van die bruto inkomste uit vrugte in die Wes-Kaap. Siektes en insekpeste verlaag egter die produksie van vrugte in hierdie streek. Appelbloedluise (Eriosoma lanigerum L. (Hausmann» het 'n groot invloed op appelproduksie in die Wes-Kaap. Skade word bogronds en ondergronds aangerig. Insekte koloniseer die plant en leef op floeëmsap. Besmetting van die wortels lei tot herhaalde besmetting van bogrondse dele aangesien die insekte aanteelop die wortels. In uiterste gevalle word die vrugte geaffekteer, wat vrug-verkope beïnvloed. 'Northern Spy' is in 1962 geïdentifiseer as 'n onderstam met natuurlike weerstand teen appelbloedluis en het vir lank die basis gevorm vir tradisionele telingsprogramme. Weerstand word verleen deur die Erf geen. Volgens een verslag is die natuurlike weerstand van Northern Spy egter in 1968 in Suid-Afrika oorkom, maar dit is nog nie in 'n onafhanklike studie bevestig word nie. Die hoof doelstellings van hierdie studie was om eerstens deur middel van die AFLP tegniek molekulêre merkers te identifiseer wat nouer gekoppel is aan die appelbloedluis weerstandsgeen, En, as bestaande merkers. Hierdie tegniek is toegepas op saailinge wat deur konvensionele fenotipering geselekteer is. Indien merkers suksesvol geïdentifiseer is, kan dit in bestaande telingsprogramme geïntegreer word. Tweedens is bestaande RAPD en SCAR merkers ook getoets om hul toepaslikheid te bepaal vir gebruik in plaaslike teelprogramme. Oplaas sal die segregasie van die Erf geen in Suid- Afrikaanse populasies ook deur middel van nou gekoppelde merkers bepaal kan word. Kruisings van elk van die drie weerstandbiedende genotipes, naamlik 'Northern Spy', 'Rootstock 5' en 'Russian Seedling', en die vatbare kultivar, 'Braeburn' , het drie families daargestel. Elke weerstandbiedende genotipe is toegelaat om in isolasie te kruisbestuif met die vatbare ouer. Twee hand-bestuifde families, 'Russian Seedling' x 'Liberty' en 'Russian Seedling' x 'Northern Spy', is in 'n latere stadium van die studie ingesluit. Die AFLP tegniek is gebruik vir die identifikasie van polimorfiese merkers tussen vatbare en weerstandbiedende populasies. Geen merkers is egter geïdentifiseer nie. Bestaande SCAR en RAPD merkers is vervolgens gebruik om te bepaal of hulle geskik is vir gebruik in merker-bemiddelde seleksie vir appelbloedluis weerstand. Wisselende resultate is verkry ten opsigte van amplifikasie, herhaalbaarheid van resultate was swak en geen onweerlegbare bewyse oor die segregasie van die Erfgeen is bekom nie. Dit beklemtoon die noodsaaklikheid om merkers wat geredelik in plaaslike teelprogramme toegepas kan word, te ontwikkel. Die identifikasie en integrasie van sulke merkers sal die plaaslike en wêreld-wye appel industrieë aansienlik bevoordeel.

Aim: Identifying how climate change, habitat loss, and corridors interact to influence species survival or extinction is critical to understanding macro-scale biodiversity dynamics under changing environments. In North America, the ice-free corridor was the only major pathway for northward migration by megafaunal species during the last deglaciation. However, the timing and interplay among the late Quaternary megafaunal extinctions, climate change, habitat structure, and the opening and reforestation of the ice-free corridor have been unclear. Location: North America. Time period: 15–10 ka. Major taxa studied: Woolly mammoth (Mammuthus primigenius). Methods: For central North America and the ice-free corridor between 15 and 10 ka, we used a series of models and continental-scale datasets to reconstruct habitat characteristics and assess habitat suitability. The models and datasets include biophysical and statistical niche models Niche Mapper and Maxent, downscaled climate simulations from CCSM3 SynTraCE, LPJ-GUESS simulations of net primary productivity (NPP) and woody cover, and woody cover based upon fossil pollen from Neotoma. Results: The ice-free corridor may have been of limited suitability for traversal by mammoths and other grazers due to persistently low productivity by herbaceous plants and quick reforestation after opening 14 ka. Simultaneously, rapid reforestation and decreased forage productivity may have led to declining habitat suitability in central North America. This was possibly amplified by a positive feedback loop driven by reduced herbivory pressures, as mammoth population decline led to the further loss of open habitat. Main conclusions: Declining habitat availability south of the Laurentide Ice Sheet and limited habitat availability in the ice-free corridor were contributing factors in North American extinctions of woolly mammoths and other large grazers that likely operated synergistically with anthropogenic pressures. The role of habitat loss and attenuated corridor suitability for the woolly mammoth extinction reinforce the critical importance of protected habitat connectivity during changing climates, particularly for large vertebrates.

Since the 1980s, hemlock-dominated forests (Tsuga canadensis) of central New England have been increasingly infested by the invasive pest hemlock woolly adelgid (HWA, Adelges tsugae), predominantly resulting in its replacement by black birch-dominated forests (Betula lenta). To date there has been no long-term empirical analysis of HWA effects on forest carbon (C) cycling due to forest transition from hemlock to black birch. To address this question, I measured the C pools in five stand types at varying ages and stages of HWA infestation in Massachusetts and Connecticut. I also measured C fluxes in aboveground net primary production (ANPP) and soil respiration, and studied the drivers of these fluxes viz. litter production, rates of foliar decomposition, soil exoenzyme activity, temperature sensitivity of soil respiration and nitrogen (N) cycling. The mass of C stored in recovering forests was resilient to HWA infestation but the location of these stocks varied among stand types. There was a transition of C from live biomass in healthy, unaffected secondary hemlock forests to coarse woody debris (CWD) in recently girdled forests intended to simulate the effect of HWA on hemlock loss. Twenty years post-HWA infestation, however, ANPP was very high and there was a large increase in biomass-C pools in aggrading black stand types. C pools in mature, secondary black birch stand types ~135 years since pastureland abandonment were as large as those in primary hemlock stand types ~235 years of age, suggesting recovery of C storage within one century of HWA infestation. Soil respiration rates were positively correlated with inputs of hardwood leaf litter, fine root biomass and exoenzyme activity. Stand-type variations in ANPP were positively correlated with annual N requirements and N uptake from the soil. Nitrogen-use efficiency was highest in the girdled and post-HWA infestation stand types where ANPP was dominated by wood production which has a wide C:N ratio. Similar trends were found in soil respiration, but not to the same degree as that of ANPP. Collectively, my results indicate that southern New England forests C storage is highly resilient to the HWA-induced losses of hemlock, suggesting that these ecosystems will continue to be sinks for atmospheric carbon dioxide.

Over the past several decades, naturally occurring populations of Fraser fir (Abies fraseri) in the Black Mountains of North Carolina have been heavily impacted by both direct and indirect anthropogenic disturbances, including logging and logging- associated fires, and high mortality rates due to the introduction of the exotic insect, balsam woolly adelgid (BWA) (Adelges piceae). The decline in Fraser fir is particularly concern because it serves as a foundation species within the spruce-fir forests of the Southern Appalachian Mountains. Our objectives for this research were to 1) use current stand structure to infer whether Fraser fir trees are experiencing a cycle of regeneration-mortality that will lead to eventual decline of the population, 2) determine what role, if any, the site-specific geographic variables of slope, elevation, aspect, and land use history have on stand structure, mortality, and BWA infestation level, and 3) analyze repeat aerial photography to examine broad trends of spruce-fir forest cover change caused by anthropogenic disturbance and the BWA. In order to understand stand structure, mortality, and infestation levels, we conducted detailed field surveys of Fraser fir trees throughout the Black Mountains using 44, fixed-radius circular sampling plots. These plots were placed throughout a series of aspects, elevations, and disturbance types in order to understand geographic variability among these variables. An analysis of 4 repeat aerial photographs and corroborating ground photographs revealed broad spatio-temporal trends of spruce-fir regeneration and mortality from 1954 to 2006. Our results indicate that Fraser fir stands at higher elevations are currently in a state of recovery; whereas stands at lower elevations appear to be more susceptible to BWA-induced mortality. Changes in forest cover area from 1954 to 2006 were influenced greatly by direct and indirect anthropogenic disturbance. Our results call attention to the significant impact that direct and indirect anthropogenic disturbance has had on Fraser fir stand structure, but also provide evidence for the ability of an imperiled ecosystem to recover from high rates of insect caused mortality. / Master of Science

Hybridization was evaluated among three Laricobius spp. involved in the biological control of hemlock woolly adelgid (Adelges tsugae Annand). Following lab mating studies, there was no evidence that Laricobius osakensis Montgomery and Yu could produce hybrid progeny with either Laricobius nigrinus Fender or Laricobius rubidus LeConte. Interaction between L. osakensis and L. nigrinus did not result in a lower production of progeny as a result of fitness costs associated with interspecific mating attempts. Laricobius nigrinus and L. rubidus hybrids were produced in the lab and collected in the field. Hybrid progeny showed very little evidence of decreased fitness. For example, there was no significant difference in the number of days it took for hybrids and pure parental species to develop from egg hatch to the prepupal stage, there was no difference among hybrids and pure parental species in the head capsule widths and larval lengths for the first through third instar, and there was evidence of an F2 generation from field collected specimens. Hybrids produced in the lab had intermediate shaped genital paramere angles compared with parental species, and had elytra coloration similar to that of L. rubidus. Hybrids showed no host preference in the lab, but a preference for Adelges tsugae in the field. Of 12 site factors examined, only the number of years that L. nigrinus was present at the site was found to be associated with percent hybrids. Contamination of the L. osakensis colony with Laricobius naganoensis Leschen resulted in the need to develop molecular methods to differentiate L. osakensis from L. naganoensis. Three restriction enzymes were found that correctly differentiated the two species. / Ph. D.

Thesis (MScAgric)--University of Stellenbosch, 2003. / ENGLISH ABSTRACT: Various aspects of the biology and ecology of woolly apple aphid, Eriosoma lanigerum, were investigated, including initial galling damage caused by E. lanigerum to the roots of apple trees, the possible relationship between E. lanigerum and Xiphinema and Pratylenchus nematodes and the effectiveness of Biostart 2000® and Furfural® as possible control agents of E. lanigerum in the orchard. Preliminary root damage by first instar E. lanigerum feeding was characterized by the mechanical injury of endodermis and parenchyma tissues. Damage by second, third and fourth instar E. lanigerum was similar, but the symptoms were more pronounced. Damage caused by adults included a pronounced swelling at infected areas of the root. Cell walls hardened until the root was radially strengthened with sclerenchyma tissue and nonconducting xylem vessels while the cuticle expanded greatly through the growth of corklike cambium tissue. There was no direct relationship between the population dynamics of E. lanigerum and those of Xiphinema and Pratylenchus nematodes. The occurrence of E. lanigerum appeared to be seasonal while P. penetrans and Xiphinema numbers fluctuated erratically. Undamaged root nitrogen levels seemed to correspond with the normal root growth cycle. Nitrogen levels from galled roots were significantly lower than those of undamaged roots, probably due to E. lanigerum feeding. Soils rich in fine sand and clay sustained higher populations of E. lanigerum and Xiphinema than sandy soils. The number of E. lanigerum found in soil samples correlated well with the damage index allocated to the samples. The numbers of Xiphinema found in soil samples also correlated well with the damage index allocated to the samples according to suspected Xiphinema damage symptoms. Both Biostart 2000® and Furfural® were effective as control agents of woolly apple aphid. Furfural'Ï, a chemical waste product of the sugarcane industry, was however not as effective as Biostart 2000®, a product that includes an activator and three bacterial species, Bacillus laterosporus, B. chitinosporus and B. licheniformis. The bacteria in the Biostart 2000® treated pots could replicate themselves under suitable conditions while Furfural® dilutes with each watering. Biostart 2000® is also easier to prepare than Furfural® since the components of Biostart 2000® readily mix to form a paste easily thinned by water, whereas Furfural® is an oily substance that does not easily disperse in water. Root damage was initiated soon after E. lanigerum started feeding, however there was no apparent relationship between E. lanigerum and the nematode species. The most promising, environmentally friendly control measure was Biostart 2000®. / AFRIKAANSE OPSOMMING: Verskeie aspekte van biologie en die ekologie van die appel bloedluis, Eriosoma lanigerum, was ondersoek insluitende aanvanklike galvorming veroorsaak deur E. lanigerum op wortels van appelbome, die moontlike verwantskap tussen E. lanigerum en Xiphinema en Pratylenchus nematodes en die effektiwiteit van Biostart 2000® en Furfural® as moontlike beheeragente van E. lanigerum in die boord. Aanvanklike wortelskade deur eerste ins tar E. lanigerum voeding was gekenmerk deur die meganiese beskadiging van endodermale en parenchiem weefsel. Skade veroorsaak deur tweede, derde en vierde instar E. lanigerum was soortgelyk alhoewel die simptome meer beklemtoond was. Skade deur volwassenes het 'n meer duidelike swelsel by geïnfekteerde wortelareas ingesluit. Selwande het verhard totdat die wortel radiaalsgewys versterk was met skierenchiem weefsel en nie-geleidende xileemvate terwyl die kutikula grootliks toegeneem het deur die groei van kurkagtige kambiumweefsel. Daar was geen direkte verwantskap tussen die bevolkingsdinamika van E. lanigerum en dié van Xiphinema en Pratylenchus nematodes nie. Die voorkoms van E. lanigerum was seisoenaal terwyl P. penetrans en Xiphinema se getalle onvoorspelbaar gefluktueer het. Onbeskadigde wortel stikstofvlakke het ooreengestem met die normale wortel groeisiklus. Stikstof vlakke van galwortels was noemenswaardig laer as dié van onbeskadigde wortels, heel waarskynlik as gevolg van voeding deur E. lanigerum. Grond ryk aan fyn sand en klei het groter bevolkings van E. lanigerum en Xiphinema onderhou as sanderige gronde. Die aantal E. lanigerum in grondmonsters het goed ooreengestem met die skade indeks wat aan die monsters toegeken was. Die aantal Xiphinema in grondmonsters het ook goed ooreengestem met die beskadigingsindeks wat aan die monsters toegeken is weens vermoedelike Xiphinema skade simptome. Beide Biostart 2000® en Furfural® was effektief as beheeragente van die appelbloedluis. Furfural'", 'n afvalproduk van die suikerriet industrie, was egter minder effektief as Biostart 2000®, 'n produk bestaande uit 'n aktiveerder en drie bakterie spesies, Bacillus laterosporus, B. chitinosporus en B. licheniformis. Die bakterië in die Biostart 2000® behandelde potte kon vermeerder onder gunstige toestande terwyl Furfural® na elke besproeiing verdun het. Biostart 2000® is ook makliker om aan te maak as Furfural® aangesien die bestanddele van Biostart 2000® geredelik meng tot 'n wateroplosbare pasta, terwyl Furfural® 'n olierige vloeistofis wat moeilik 'n waterige suspensie vorm. Wortelskade het plaasgevind kort nadat E. lanigerum begin voed het, alhoewel daar geen duidelike verwantskap tussen E. lanigerum en nematode spesies voorgekom het nie. Die mees belowende omgewingsvriendelike beheermaatreël was Biostart 2000®.

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Thesis (M. En.)--Miami University, Institute of Environmental Sciences, 2004. / Title from first page of PDF document. Includes bibliographical references (p. 32-34).