The aim of the study was to determine the consequences of elephant (Loxodonta africana) impact on selected nesting sites of avian fauna and other species in the Associated Private Nature Reserves. The study also aimed at answering key questions on how the architecture of trees influence nest site suitability and what landscape features affect nest site location. Furthermore the type of impact that elephants have on specific nesting sites was determined and how this would affect the short term persistence of these trees. The facillitatory role of elephants was examined by looking at the type of impact that produces gum exudants as well as what gum is selected for by primates and whether primary branch breaking may lead to the creation of nesting sites for species such as the southern ground hornbill (Bucorvus leadbeateri). / Environmental Sciences / M. Sc. (Environmental Management)

This thesis addresses decision mechanisms in foraging situations, using laboratory experiments with European starlings (Sturnus vulgaris). Building on previous work from the Behavioural Ecology Research Group, I chose the Sequential Choice Model (SCM; reviewed in Kacelnik et al., 2011 − Appendix 1) as a starting point, and tested its premises and predictions generalising it to different experimental protocols. Classical decision models do not relate choice preferences to behaviour towards isolated options, and assume that choices involve time-consuming evaluations of all alternatives. However, previous work found that starlings’ responses to isolated options predict preference in choices, and that response times to single-option encounters are not reliably longer than response times in choices. Since, in the wild, options are normally encountered sequentially, dealing with isolated options can be considered of greater biological, and possibly psychological, significance than simultaneous decisions. Following this rationale, the SCM postulates that when multiple simultaneous stimuli are met they are processed in parallel, each competing against the memory of background opportunities, rather than comparing present options to each other. At the time of launching this research, these ideas had only been applied to protocols involving just two deterministic alternatives and offering no chance to explore the influence of learning history (i.e., how animals learn to choose; see Chapter 4). To increase their relevance and offer more rigorous tests, I generalised them to situations with multiple (see Chapters 2, 4 and 5), and in some cases probabilistic alternatives (see Chapter 3), controlling the learning regime. I combined these extensions with tests of economic rationality (see Chapter 6), a concept that is presently facing sustained debates. Integrating the result of all experimental chapters (see Chapter 7), my results support the notion that behaviour in single-option encounters is fundamental to understand choice behaviour. The important issue of whether choices involve a decision time cost or the opposite, a shortening of response times, remains unsolved, as neither could be evidenced reliably.

The Effects of Tropical Forest Management on Biodiversity and Ecosystem Functioning Eleanor M. Slade 1. Between 35 % and 50 % of all closed-canopy tropical forest has been lost, and the rate of deforestation continues to increase throughout the tropics. Despite a wealth of literature on the effects of tropical forest disturbance on the diversity and composition of a variety of taxa, there is still no clear consensus on the value of disturbed forests for biodiversity. 2. If forest management practises are to be sustainable in the long-term they should maintain both biodiversity and ecosystem functioning (the interactions and processes of the ecosystem), as well as a timber harvest. However, few studies have investigated the extent to which ecosystem functioning is reduced in logged forests. The effects of different logging intensities on a variety of taxa, and the ecosystem processes with which they are associated, were assessed in the Danum Valley Conservation Area in Sabah (Malaysian Borneo). 3. Even under high logging intensities, the forests of Sabah appear to have been managed in a way that maintains timber yields in the short-term. However, other aspects of forest structure had been affected, which could have important consequences ecologically, and for the long-term sustainability of timber harvests. 4. Combining field studies with manipulative experiments allows assessment of the impacts of species changes associated with habitat modification on measures of ecosystem functioning. Dung beetle (Coleoptera: Scarabaeidae: Scarabaeinae) functional group richness and composition were manipulated in a series of field experiments. Certain functional groups and species were found to have a greater impact on ecosystem functioning than others; nevertheless a full complement of species was needed to maintain full ecosystem functioning. 5. Dung beetles appeared to be relatively robust to changes in forest structure associated with selective logging, but species richness was reduced with high-intensity logging. There was a corresponding decrease in ecosystem functioning (dung and seed removal) with a decrease in species richness, and a decrease in the biomass of large nocturnal tunnellers, suggesting that although some species are dominant, rare species are also needed to preserve full ecosystem functioning. 6. A complex interaction between birds and ants resulted in reduced herbivory of seedlings of the important timber tree, Parashorea malaanonan, in some instances. However, this interaction was not affected by either selective or high intensity logging. Seedfall of P. malaanonan, was reduced in logged forest compared to primary forest. Despite insect seed predation being higher in primary forest, there was still successful recruitment during a non-mast year. Parasitism of insect-predated seeds was found to be inversely density dependent, and was higher in logged forest where seed predation was lower. 7. The results of this thesis suggest that the forests of Sabah appear to be being logged under a management system that is compatible with sustainable timber management, but not necessarily sustainable forest management. Low intensity selective logging seems to preserve much of the original forest structure, biodiversity and ecosystem functioning compared to logging at higher intensities. However, ecosystem processes were variable in their response to logging, suggesting that management decisions should be based on the consideration of multiple taxa and processes.

In Western Europe the incidence of tick-borne encephalitis (TBE) has increased over the last 30 years, coupled with changes in distribution. Modifications in the TBE enzootic cycle, through a combination of changes in temperature, vertebrate abundance and habitat suitability may have increased the risk of TBE in recent years. In Switzerland, analysis using satellite-derived climate data demonstrated that the environment of areas with TBE since the 1980s and areas that recently became endemic for TBE have become more similar between 2001 and 2009. This was coupled with an increase in April, May and June temperature, which could have affected the tick population and/or human exposure to ticks. Deer and boar abundance also changed in some cantons. In Germany, spatio-temporal modelling demonstrated the importance of temperature, vertebrate abundance and unemployment in the incidence and distribution of TBE between 2001 and 2009. Changes in TBE reporting, April, May and June temperature, vertebrate abundance and pesticide use may have contributed to increases in TBE in 1992 and 2001. Human exposure patterns, however, appear to be as important as the enzootic cycle in shaping the incidence of TBE, not only in determining the overall trend but also in interacting with the weekly, seasonal and yearly patterns of tick hazard to give the observed incidence. In Switzerland, in weeks with warm, sunny weather, human exposure to ticks is promoted and short-term increases in tick bites are seen. Human outdoor activity also shifts the seasonal pattern of tick bites, when compared with tick questing. There was no apparent increase in time spent in outdoor activities between the 1990s and 2000s in Italy, Germany and Austria, but survey data demonstrated that walking and hiking were already popular activities across Europe by the 1990s. The popularity of mushroom and berry foraging as a source of income in Latvia, Lithuania and Poland, coupled with the expense of vaccination, provide an inverse link between economic wellbeing and TBE risk. Correspondingly, in 2009, the economic recession was associated with an increase with TBE in these three countries.

Sexual selection acts on traits that increase the reproductive success of an individual in competition with other individuals of the same sex over reproductive opportunities, through intra-sexual competition and inter-sexual mate choice. Because males benefit more from remating than females, they are subject to more intense sexual selection. Modern genetic tools have shown that females often mate promiscuously, thus prolonging sexual selection after insemination through intra-sexual (sperm competition) and inter-sexual (cryptic female choice) episodes. Despite increasing interest in post-copulatory sexual selection, the implications of sperm competition, cryptic female choice and underpinning mechanisms remain little understood. This thesis adopts an integrated approach to quantify the relative importance of post-copulatory episodes in the operation of sexual selection, elucidate their proximate mechanisms in the red junglefowl Gallus gallus. By combining behavioural observations of replicate groups with paternity data, I show that female promiscuity decreased the total opportunity for sexual selection in a group, but accounts for an unexpectedly large proportion of the variance in male reproductive success. By comparing the operation of sexual selection on multiple male traits, I show that post-copulatory sexual selection reinforced pre-copulatory sexual selection for male social dominance and that female preferred to mate with compatible males. I used experiments to study the mechanisms of post-copulatory sexual selection by studying the effect of seminal fluid in sperm competition and cryptic female choice in relation to male status and relatedness. Following previous work indicating that seminal fluid products influence sperm quality in this species, I tested in vivo whether the seminal fluid of an ejaculate acts differentially towards sperm from the same ejaculate and rival sperm, and found no evidence for this idea. Finally, I show that cryptic female choice can drastically bias the outcome of sperm competition, and that female fowl might bias paternity toward unrelated males.

Studies of the evolution of the major histocompatibility complex (MHC) have been central to the understanding sexual selection and pathogen-mediated selection. The European badger Meles meles is well suited for exploring such questions because of its life history characteristics, reproductive biology and mating system. In this thesis, I examined both MHC class I and class II genes. Seven putatively functional sequences were found for class I genes and four for class II DRB genes. Evidence of past balancing selection of both genes was demonstrated by the d_Nd_S ratio, by positive selection at the antigen-binding site (ABS) and by trans-species polymorphism of alleles within other mustelids and carnivores. MHC class I genes also showed evidence of concerted evolution, but domains showed different evolutionary histories. MHC genes may influence microbiota and odour of an individual and influence mating preferences. I examined the bacterial community of the subcaudal gland secretion and demonstrated a high number of bacterial species (56 operational taxonomic units), which cubs exhibited a higher diversity than adults. The microbiota may lead to an individual-specific odour as a cue signaling the MHC genotype of potential mating partners. I report the first evidence for a MHC- based mating preference in carnivores. Female badgers showed a MHC-assortative mate choice towards breeding with males that had functionally similar MHC genes, for MHC class II DRB genes. This applied to neighbouring-group matings. I also found considerable annual fluctuation in the occurrence of MHC-based mate choice. Based on genome-wide background in the same mating randomizations I found no evidence of inbreeding, which indicated that MHC similarity was apparently the actual target of mate choice. In line with MHC-assortative mate choice, MHC heterozygosity had no influence on the co-infection status. Individual MHC alleles did, however, associate with resistance and susceptibility to specific pathogens, suggesting that MHC diversity may be driven and maintained by pathogen-mediated selection through rare-allele advantages and/or fluctuating selection. My study of genetic characteristics, mate choice and pathogen pressures in a wild population revealed past and contemporary evolutionary process of the MHC genes. This increases knowledge of how the MHC may affect mating behaviour and sexual selection, ultimately influencing population processes.

As ecosystems become increasingly fragmented, there has been a proliferation of research into fields such as resource use, movement ecology and habitat connectivity. To understand how species may adapt to threats associated with habitat fragmentation it is necessary to study these processes in dispersing individuals. However, this is seldom done. Dispersal is one of the most important life-history traits involved in species persistence and evolution, but the consequences of dispersal are determined primarily by those that survive to reproduce. Although dispersal is most effectively studied as a three-stage process (departure, transience and settlement), empirical studies rarely do so and an investigation into the entire process has probably never been carried out on any one species. Here I investigate the survival, resource use, movement ecology and connectivity of African lions (Panthera leo) in all three dispersal phases in addition to adulthood. I make use of a longterm dataset incorporating radio-telemetry and observational data from lions in Hwange National Park, Zimbabwe. Dispersal is inherently risky and my results show that male lions that disperse while young suffer high mortality, young dispersal being brought about by high off-take of territorial males. Dispersing males may be aware of risks associated with territorial adults as they position themselves far from them and utilise habitats and resources differently. However, dispersers, compared to adult males and females, are far less averse of risky, anthropogenic landscapes, suggesting they are the demographic most prone to human-lion conflict. The ontogenetic movement behaviour of lions reflects a transition from directional movement during transience, suggestive of sequential search strategies, to random or periodic use of a fixed territory after settlement. In terms of habitat connectivity, I show that radically different conclusions emerge depending on which demographic is used to parameterise connectivity models. Understanding the shifting mechanisms that species adopt throughout ontogeny is critical to their conservation in an increasingly fragmented world.

The main aim of this diploma thesis is to create quests by which children of younger school age get acquainted with the environment of Hluboká Zoo. It includes methodological materials for teachers. Quests were created based on theoretical and practical knowledge. Their aim is to arouse interest in nature. As a teaching aid, it can be used not only by the school but also by the general public for educational and educational purposes. The thesis also contains information about Questing, outdoor games, leisure, out-of-school teaching and training in zoos.

M. Tech. Architecture (Professional) / The National Research Foundation has recognized the zoo as a critical player towards the conservation of animal heritage in southern Africa. Yet, as we have seen, tantamount to having outstanding research methods, is having the needed facilities to deploy them effectively. In order for this to come to bare, the zoo requires a careful assessment of architectural concerns. This thesis presents exactly those. The wildlife medical centre here proposed precipitates out of a comprehensive study engaging the following issues of concern; zoo healthcare and rehabilitation, sub-nature and animal architecture. The proposed site location currently supports the out-dated hospital (built in 1969), which is on the zoo's south-eastern corner along Boom Street. Its facilities include a veterinary hospital, research laboratories, a bio-bank, temporary wards, and rehabilitation wards whose design derives not only from traditional matters of architectural concern but also the informed, first-hand knowledge of the animals' needs and preferences as understood by the zoo's staff. Additionally, the proposed design exposes and showcases the zoo's research facilities along its public interface in order to better serve its educational efforts. Thus, this proposal presents the means for promoting conservation awareness and, at the same time, empowers its dedicated staff.

This creative project investigated, planned and developed a master plan for the new National Zoological Botanical Park of Costa Rica. Based on an appraisal of the appropriate vegetation type for introduction onto a proposed study site, the flora and fauna from similar sites elsewhere in Costa Rica were identified. Placing the flora in the appropriate areas on the proposed study site allowed the fauna that has direct association with specific flora to be located. Based on slope analysis, contour formations, flora and fauna habitats, visitor and staff requirements, a master plan for the new National Zoological and Botanical Park of Costa Rica was developed. / Department of Landscape Architecture