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Previous issue date: 2017-02-14 / CAPES / FAPERJ / Centrolobium paraense Tul. popularly known as "pau-rainha", is a naturally occurring legume species from the northern state of Roraima (Brazil) to Panama. It has economic, social and environmental importance for local populations, being a nitrogen fixing species in association with bacteria of the rhizobia group. Thirteen Gram-negative, aerobic, motile with polar flagella, rods shaped bacteria previously isolated from root nodules of C. paraense grown in soils from the Roraima State were submitted to a polyphasic approach characterization. The study involved the carbon source utilization, enzymatic reaction, antibody, pH and NaCl tolerance, 16S rRNA, nodC, nifH and multi locus sequence phylogenetic analysis (MLSA with dnaK, glnII, recA, gyrB and rpoB), G+C content and Average Nucleotide Identity (ANI). Growth of strains was observed at temperature range 20- 36?C (optimal 28?C), pH ranges 5-11 (optimal 6.0-7.0) and 0.1-0.5%NaCl (optimal 0.1- 0.3%). Analysis of 16S rRNA gene placed the strains into two groups within Bradyrhizobium. Closest neighbouring species (98.8%) for group I was B. neotropicale while for group II were twelve species with more than 99% of similarity. MLSA confirmed B. neotropicale BR 10247T as the closest type strain for the group I and B. elkanii USDA 76T and B. pachyrhizi PAC 48T for group II. ANI differentiated group I from the B. neotropicale BR 10247T (79.6%), and group II from B. elkanii USDA 76T and B. pachyrhizi PAC 48T (88.1% and 87.9%, respectively). Fatty acid profiles (majority C16:0 and Summed feature 8 (18:1?6c/18:1?7c) for both groups), DNA G+C content and carbon compound utilization supported the placement of the novel strains in the genus Bradyrhizobium. Gene nodC and nifH of the new strains have in general low similarity with other Bradyrhizobium species. Both groups nodulated plants from the tribes Crotalarieae, Dalbergiae, Genisteae and Phaseoleae. Based on the result obtained, two novel species which the names Bradyrhizobium centrolobii and Bradyrhizobium macuxiense are proposed. / Centrolobium paraense Tul. popularmente conhecido como ?pau-rainha?, ? uma esp?cie de leguminosa que ocorre naturalmente no norte do estado de Roraima (Brasil) ao Panam?. Tem import?ncia econ?mica, social e ambiental para popula??es locais, sendo uma esp?cie fixadora de nitrog?nio (N) em associa??o com bact?rias do grupo dos riz?bios. Treze bact?rias gram-negativas, aer?bicas, com mobilidade atrav?s de flagelos polares e em forma de bastonetes previamente isoladas de n?dulos de ra?zes de Centrolobium paraense cultivadas em solos do estado de Roraima foram submetidas a caracteriza??o com abordagem polif?sica. O estudo envolveu a utiliza??o de fontes de carbono, rea??es enzim?ticas, composi??o de ?cidos graxos das c?lulas, antibi?ticos, pH e toler?ncia a NaCl,16S rRNA, an?lise filogen?tica dos genes nodC, nifH e de sequ?ncias multilocus (MLSA com dnaK, glnII, recA, gyrB e rpoB), conte?do de G+C e identidade m?dia de nucleot?deos (ANI). O crescimento das estirpes foi observado num intervalo de temperatura 20-36?C (?tima 28?C), intervalo de pH de 5-11 (?timo 6,0-7,0) e 0,1-0,5% NaCl (?timo 0,1-0,3%). A an?lise do gene 16S rRNA posicionou as estirpes em dois grupos dentro de Bradyrhizobium. A esp?cie mais pr?xima (98,8%) para o grupo I foi B. neotropicale enquanto para o grupo II foram outras doze esp?cies com mais de 99% de similaridade. MLSA confirmou B. neotropicale BR 10247T como a estirpe tipo mais pr?xima do grupo I e B. elkanii USDA 76T e B. pachyrhizi PAC 48T do grupo II. O ANI diferenciou o grupo I da B. neotropicale BR 10247T (79,6%) e o grupo II da B. elkanii USDA 76T e B. pachyrhizi PAC 48T (88,1 e 87,9 respectivamente. O perfil de ?cidos graxos (predomin?ncia de C16:0 e caracterist?ca somada 8 (18:1?6c/18:1?7c) para ambos os grupos, ANI, o conte?do de G+C e a utiliza??o de compostos de carbono deram suporte ao posicionamento das novas estirpes no g?nero Bradyrhizobium. Os genes nodC e nifH t?m em geral baixa similaridade com outras esp?cies de Bradyrhizobium. Ambos os grupos nodularam plantas de diferentes tribos.
| Identifer | oai:union.ndltd.org:IBICT/oai:localhost:jspui/2234 |
| Date | 14 February 2017 |
| Creators | MICHEL, Daniele Cabral |
| Contributors | Zilli, Jerri ?dson, Zilli, Jerri ?dson, Schultz, Nivaldo, Botelho, Gl?ria Regina, Coelho, Irene da Silva |
| Publisher | Universidade Federal Rural do Rio de Janeiro, Programa de P?s-Gradua??o em Agronomia - Ci?ncia do Solo, UFRRJ, Brasil, Instituto de Agronomia |
| Source Sets | IBICT Brazilian ETDs |
| Language | Portuguese |
| Detected Language | English |
| Type | info:eu-repo/semantics/publishedVersion, info:eu-repo/semantics/masterThesis |
| Format | application/pdf |
| Source | reponame:Biblioteca Digital de Teses e Dissertações da UFRRJ, instname:Universidade Federal Rural do Rio de Janeiro, instacron:UFRRJ |
| Rights | info:eu-repo/semantics/openAccess |
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