M-plane (101 ¡Â0) ZnO thin films were grown on m-plane sapphire (101 ¡Â0) substrates by RF magnetron sputtering. We varied the RF power, working pressure, and O2/Ar ratio to obtain the best growth conditions. Structural properties were investigated by X-ray diffraction(XRD). XRD measurements showed that the crystal orientation of ZnO films was non-polar m-plane (101 ¡Â0). In addition, photoluminescence (PL) spectrum showed the bandgap energy of ZnO films was about 3.24 eV. PL spectrum showed zinc vacancy signal for films grown in oxygen rich condition. Carrier concentration was measured by hall measurement as well as FTIR spectrometry. The results showed the carrier concentration calculated by optical measurements was higher than hall measurements. One possibility for this could be the band tail at the bottom of conduction band. This band tail can make the effective mass larger and thus influencing the optical carrier concentration.

Soot and other products of incomplete combustion play an important role in the chemistry of the atmosphere. As particles are exposed to trace gases, such as ozone, their chemistry and physical properties can be altered leading to changes in their optical properties, as well as their cloud condensation nuclei and ice nucleation abilities. These alterations can lead to changes in the global radiative budget and cloud microphysical processes, which in turn affect the climate. In this study, the chemical and physical changes associated with the oxidation of pyrene, anthracene, and carbon (lampblack) by ozone were investigated. Fourier Transform Infrared Spectroscopy was used to identify oxidation products and track reaction progress for these representative aerosols. A C=O band attributed to a carboxylic acid formation was observed for all three substances, at each level of exposure to ozone - 20 ppm, 40 ppm, and 80 ppm. Second order reaction rate constants ranged from 9.58 x 10-16 cm2 molecules-1 s-1 to 7.71 x 10-13 cm2 molecules-1 s-1. Measurements of water uptake, ice nucleation efficiency, and optical properties were obtained to determine whether any physical changes associated with the oxidation process occurred. Optical measurements show an increase in the ultra-violet absorption of anthracene, but not for pyrene, while an increase in the visible absorption for pyrene was observed, but not for anthracene. Oxidized soot froze at a warmer temperature (-22.8 degrees C) then fresh soot (-25.6 degrees C), showing an increase in ice nucleation efficiency. Our data indicates that oxidation by ozone does alter the chemistry and physical properties of the substances study, leading to possible changes in how they interact with atmospheric processes.

Organic matter is ubiquitous in the environment and exists in many different forms. Reactions involving organic matter are diverse and many have significant economic and environmental implications. In this research, calorimetric techniques were used to study organic- inorganic reactions in two different systems. The primary objectives were to elucidate potential mechanism(s) by which: (i) natural organic matter (NOM) influences strength development in lime-stabilized soils, and; (ii) plant-derived biochars reacts with cations in aqueous environments. Natural organic matter influenced strength development in lime-stabilized soils through the direct inhibition of the formation of pozzolanic reaction products. The degree of inhibition was dependent mainly on the type of pozzolanic reaction product, and the amount and source of organic matter. The formation of the pozzolanic reaction product, calcium silicate hydrate II (CSH2) was less affected by NOM, than was the formation of CSH1. For a given pozzolanic product, the inhibition increased with NOM content. The effect of organic matter source followed the order fulvic acid> humic acid&gt; lignite. Formation of CSH pozzolanic reaction products decreased by 50-100%, 20-80% and 20-40% in the presence of ?2% fulvic acid, humic acid and lignite, respectively. Cation interactions with plant-derived biochars were complex and depended both on the nature of the cation and biochar surface properties. Reactions involving the alkali cation, K+; occurred via electrostatic ion exchange, on deprotonated functional groups located on the biochar surface and; were exothermic with molar heats of reaction (?Hads) between -3 and -8 kJ mol-1. In contrast, reactions involving the transition metal cation, Cd2+ were endothermic with delta Hads between +10 and +30 kJ mol-1. Reaction mechanism(s) for Cd2+ varied from ion exchange/surface complexation in biochars formed at <350 oC, to an ion exchange/surface complexation/diffusion-controlled mechanism in biochars formed at >/=350 oC. For a given cation, differences in sorption characteristics were attributable to temperature-dependent or plant species dependent variations in the properties of the biochars.

Geopolymers (GPs) are a new class of inorganic polymers that have been considered as good candidate materials for many applications, including fire resistant and refractory panels, adhesives, and coatings, waste encapsulation material, etc. The aim of this study is to establish relationship between structural and mechanical properties of geopolymers with different chemical compositions. The metakaolin-based geopolymers were prepared by mechanically mixing metakaolin and alkaline silicate aqueous solutions to obtain samples with SiO2/Al2O3 molar ratio that ranges from 2.5 to 5, and Na/Al or K/Al atomic ratios equal to 1. Geopolymer samples were cured in a laboratory oven at 80°C and ambient pressure for different times in the sealed containers. Structural characterization of the samples with different chemical compositions was carried out using X-Ray Diffraction (XRD), Fourier Transform Infrared (FTIR) spectroscopy, Nuclear Magnetic-Resonance (NMR) spectroscopy and Scanning Electron Microscopy (SEM) with Energy Dispersive Spectroscopy (EDS). The mechanical characterization included Micro-indentation, Vickers indentation and fracture toughness measurement, as well as compressive testing. It was found that structure and mechanical properties of GPs depend on their chemical composition. The Na-GPs with ratio 3 have a highest compressive strength and Young‘s modulus of 39 MPa and 7.9 GPa, respectively. The results of mechanical testing are discussed in more detail in this thesis and linked to structural properties of processed geopolymers.

In the present study Fourier Transform Infrared Spectroscopy was used to examine the effects of streptozotocin-induced diabetes mellitus on the structural components of slow- and fast-twitch rat skeletal muscles, at molecular level. Diabetes mellitus is a chronic disorder of carbohydrate, fat and protein metabolism, which is characterized by hyperglycemia caused by a defective or deficient insulin secretory response. The effect of diabetes is seen on a variety of tissues leading to important secondary complications such as kidney failure, liver dysfunction, cardiac disorders, etc. Skeletal muscle is one of the major tissues determining carbohydrate and lipid metabolism in the body / therefore, is one of the target tissues of diabetes. The two main types of muscle fibers are type I (slow-twitch) and type II (fast-twitch) fibers / having different structural organization and metabolic features. The FTIR spectra revealed a considerable decrease in lipid and protein content of diabetic skeletal muscles, indicating an increased lipolysis and protein breakdown or decreased protein synthesis. Moreover changes in protein structure and conformation were observed. In diabetes, muscle membrane lipids were more ordered and the amount of unsaturated lipids was decreased possibly due to lipid peroxidation. Diabetes caused a decrease in the content of nucleic acids, especially RNA, and hydrogen bonded phospholipids in the membrane structures of skeletal muscles. In all of the spectral parameters investigated slow-twitch muscle was more severely affected from diabetes. Thus, FTIR spectroscopy appears to be a useful method to evaluate the effect of diabetes on skeletal muscle tissues at molecular level.

Interactions of simvastatin with zwitterionic dipalmitoyl phosphotidylcholine (DPPC) multilamellar liposomes were investigated as a function of temperature and simvastatin concentration. And acyl chain length effect on the simvastatin-model membrane interactions was monitored with DPPC and dimyristoyl phosphotidylcholine (DMPC) lipids. All studies were carried out by two non-invasive techniques, namely Fourier transform infrared (FTIR) spectroscopy, and differential scanning calorimetry (DSC). The results showed that as simvastatin concentration increased, the main phase transition temperature decreased, the main phase transition curve broadened, and the characteristic pretransition was disappeared for both DMPC and DPPC model membranes. All concentrations of simvastatin disordered and decreased the fluidity of phospholipid membranes. Analysis of C=O stretching band showed that simvastatin either strengthen the existing hydrogen bonds of the glycerol skeleton closer to the head groups or caused the formation of new hydrogen bonds. A dehydration effect caused by simvastatin around the PO2- functional groups in the polar part of the lipids was monitored. This dehydration effect in the gel phase was more profound than in the liquid crystalline phase for 1, 6, and 12 mol% of simvastatin concentrations. DSC peaks broadened and shifted to lower temperature values by increasing the simvastatin concentration. For both lipids, simvastatin-induced lateral phase separation was observed in the DSC thermograms. Any change caused by the acyl chain length difference of DMPC and DPPC lipids was not observed on the simvastatin-membrane interactions. Also, for both of the lipids similar trends were observed in the FTIR and DSC results. More profound effects of simvastatin on the less stable DMPC membranes were observed.

The kidney is one of the most affected organs of body from diabetes. Diabetic kidney disease is a complication of diabetes seen in 30-40% of diabetic person. The aim of this work is to contribute the useful information in the therapy of diabetes. It is very important to know the role of antioxidants at the molecular level during diabetes. The protecting role of antioxidants against lipid peroxidation, the effect of cellular antioxidant enzyme systems, understanding the changes of membrane fluidity, lipid order and protein structure which are resulted from antioxidant treatment, determining the effective therapeutic dose with the help of biochemical methods are very important in order to understand the effect of antioxidants at molecular level. In this thesis work, the Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR-FTIR) was used in order to study the diabetic kidney disease at the molecular level, which is encountered as a complication of diabetes. Furthermore, the protecting and possible therapeutic role of selenium in the course of diabetic kidney disease was investigated. To conclude, the kidney plasma membranes were severely deteriorated due to diabetes with respect to its lipid, protein and carbohydrate structure and content, which were corrected after selenium treatment. The diabetes causes diminishment of whole membrane fluidity, which was normalized with the selenium administration. This is the first study demonstrating the effect of diabetes on kidney plasma membrane and the effect of selenium on stz-induced diabetic kidney plasma membranes using spectroscopic tools. The study revealed serious therapeutic and preventing capacities of selenium on diabetic kidney plasma membranes which needs confirmation of future researches. Furthermore, the dosage of selenium given to diabetics should be investigated in detail and proved with biochemical and clinical data.

Interactions of cholesterol reducing agent simvastatin with charged model membranes were investigated. Effects of cholestrol reducing agent simvastatin on the phase transition behaviour and physical properties of the anionic dipalmitoyl phosphatidylglycerol (DPPG) multilamellar liposome were studied as a function of temperature and simvastatin concentration. Moreover the effect of acyl chain length on the simvastatin model membrane interactions was monitored using dipalmitoyl phosphatidylglycerol (DPPG) and dimyristoyl phosphatidylglycerol (DMPG) lipids. All experiments were carried out by two non-invasive techniques namely Fourier Transform Infrared (FTIR) Spectroscopy and Differential Scanning Calorimetry (DSC). The observations made in the this study clearly showed that simvastatin interacts with the lipids of multilamellar liposomes and induces some variations in the structure of membranes. These effects are seen in the thermotropic phase transition profile of the membranes, on membrane order, acyl chain flexibility, lipid head group structures and membrane fluidity. The analysis of the C-H stretching region of FTIR spectra showed that, as simvastatin concentration increased, the phase transition curve broadened, pretransition temperature diminished, membrane order and membrane fluidity increased for anionic DPPG membrane. Moreover analysis of the C=O stretching and PO2 - stretching bands showed that simvastatin caused dehydration effect by decreasing of hydrogen bonding capacity in the glycerol backbone and also around the lipid head groups. DSC studies showed that as the simvastatin concentration increased, DSC curves broadened. In addition, simvastatin-induced lateral phase separation was observed in the DSC thermograms. In the second part of the study, the effect of acyl chain length on the simvastatin - membrane interactions was investigated for DPPG and DMPG lipid membranes. All parameters used in the FTIR studies are compared for DMPG and DPPG membranes. Similar results were observed for both membranes, except for the CH2 antisymmetric stretching band frequency at gel phase. Results showed that there are no significant effect of acyl chain length on simvastin - membrane interactions.

Amifostine is the only approved radioprotective agent by the Food and Drug Administration for reducing the damaging effects of radiation on healthy tissues. In this study, the effects of ionizing radiation on rat liver microsomal membrane and brain tissue and the protecting effects of amifostine on these systems were investigated at molecular level. Sprague-Dawley rats, which were administered amifostine or not, were whole-body irradiated and liver microsomal membranes and different regions of the brain of these rats were analyzed using FTIR spectroscopy, FTIR microspectroscopy and synchrotron FTIR microspectroscopy. The first part of this study revealed that ionizing radiation caused a decrease in the total lipid content and CH2 groups of lipids, an increase in the carbonyl esters, olefinic=CH and CH3 groups of lipids in the white matter and grey matter regions of the brain, which could be interpreted as a result of lipid peroxidation. In addition, radiation altered the protein structure of the brain. Amifostine caused significant protective effect against all the radiation induced damages in the brain. In the second part of the study, FTIR results showed that radiation induced a decrease in the lipid/protein ratio and a degradation of lipids into smaller fragments that contain less CH2 and more carbonyl esters, olefinic=CH and CH3 groups in microsomal membranes. In addition, radiation caused an alteration in the secondary structure of proteins, an increase in lipid order and a decrease in the membrane dynamics. Amifostine prevented all the radiation induced compositional, structural and functional damages in the liver microsomal membranes.

Albite (Na-feldspar) and orthoclase (K-feldspar) are the major feldspar minerals used in the production of glass and ceramics. They are found together with impurities like biotite, muscovite, quartz and rutile which are not desired for ceramics and glass industries. Therefore, these have to be removed to make the ore available for industrial use. In order to shed light on the actual feldspar ores, in this study / the flotation characteristics of albite, biotite, muscovite, orthoclase, quartz and rutile were investigated separately in their pure forms. In the investigation, the electrokinetic potential measurements and micro-flotation studies have been carried out to get information about their flotation characteristics under the effect of three different collectors, Aero 704, Aero 3000C and Aero 825, and the pH of the medium. The flotation recoveries were found to be pH dependent and the effective between the pH range of 7.0 and 11.5 in the presence of Aero 704. In the case of flotation with Aero 3000C, the recoveries reached up to 95.0% at certain concentrations and pH values and decreased sharply below pH 3.0 and above pH 9.5 for all the minerals tested. In the presence of Aero 825, the flotation recoveries of the minerals except for rutile, were found to be insufficient even with its highest concentration. In order to evaluate the adsorption mechanism of the collectors, Atomic Force Microscopy (AFM) and Fourier Transform Infrared Spectroscopy (FTIR) analyses were carried out. From the AFM results it might be deduced that the behavior of Aero 3000C and Aero 825 was found to be almost similar for biotite and muscovite as monolayer adsorption and for the remaining minerals, albite, orthoclase, quartz and rutile, as monolayer and bilayer adsorption together. In the case of Aero 704, for albite and orthoclase, the adsorption of the collector might be the reason for monolayer and bilayer formation on their surfaces. The strength of the interaction of the collectors on the mineral surfaces was followed by FTIR analyses before and after acetone washing. The interaction of all the collectors was found to be weak in the case of albite, orthoclase, quartz and rutile whereas the interaction of Aero 704 and Aero 3000C was found to be strong in the case of biotite and muscovite.