<p>Cryogenic transmission electron microscopy (cryoEM) has become an increasingly common tool for determining structures of proteins and protein complex at near atomic resolution. We seek to determine the structure of p97 by cryoEM using an affinity capture approach that employs a family of novel synthetic lipids bearing water soluble PEG units and known high affinity inhibitor molecules at the distal end of the polymer. A library of inhibitor modified affinity lipopolymers of 5000 KD PEG molecular weights were synthesized. The inhibitor modified lipid coated grids were used to capture p97. The reconstruction of p97 revealed the structure at dimeric state at 3.64 Å and monomeric state at 4.33 Å. A PEG unit composed of 20000 KD molecular weight based polyrotaxane containing NTA ligand as affinity tag has been synthesized, used to concentrate 6x-his tagged p97 on TEM which also enabled to see all 3D orientation of the target particles and an initial model of 10.64 Å resolution of p97 structure was resolved. </p>

Layered double hydroxides (LDHs) are clay-like minerals commonly referred to as anionic clays" with a wide range of physical and chemical properties. LDHs often find application in pharmaceuticals, as polymer additives, as additives in cosmetics, as nanomaterial's and in catalysis. This is due to having variable layer charge density, reactive interlayer space, ion exchange capabilities, a wide range of chemical compositions and rheological properties (Forano et al., 2006). Various techniques exist for the synthesis of layered double hydroxides. These include co-precipitation, the urea method, induced hydrolysis, sol-gel and hydrothermal methods. Many of these produce environmentally unfriendly effluents or by-products, are energy intensive, make use of metallic salts or require inert synthesis environments (Rives, 2001). Limitations associated with these existing processes make LDH synthesis at an industrial level expensive or difficult to achieve. The need for 'green', affordable and repeatable synthesis methods are therefore often sought after. Recently the use of mechanochemistry as an alternative synthesis technique has gained wide-spread attention. Mechanochemistry involves the breaking and forming of chemical bonds due to an induced mechanical force. Various mechanochemical techniques for the synthesis of LDH materials exist or have been explored. These include methods such as single-step, two-step and mechano-hydrothermal grinding techniques. Grinding methods can be conducted dry, wet or collectively (Qu, Zhang, et al., 2015a). Mechanochemistry has further been used in conjunction with micro-wave energy and ultrasonic irradiation. The use of mechanochemistry as a synthesis method has proven to be promising with successful and unique LDHs produced. Intercalation of unique or complex anions within the interlayer has further been proven possible. The versatility and robust nature of this synthesis method makes it ideal for industrial application. Although many studies exist it was noted that limited research has been conducted on single-step wet grinding for LDH synthesis and warrants further investigation (Qu, Zhang, et al., 2015a) (Iwasaki,Yoshii, et al., 2012). This was due to factors such as incomplete conversion, difficulties associated with grinding and morphological imperfections. Single step wet milling could be benifi cial as a synthesis procedure as it eliminates hazards associated with dry powder, contains less process steps and is therefore possibly more cost effective and can be conducted batch, semi-batch or continuously due to fluid flow. Throughout the literature research conducted it was further noted that not many different milling devices have been explored. Ball mills, mixer mills and manual grinding were the most common methods used to supply mechanical energy to a system. The study therefore aims to expand on single-step wet synthesis of LDH materials by making use of a different milling device, namely a Netzsch LME 1 horizontal bead mill. The selected mill is designed for wet grinding application and can easily be up-scaled to a commercial batch, semi-batch or continuous process. Raw materials selected were a combination of oxides, hydroxides and basic carbonates. This would eliminate hazardous salt by-products and effluent, promoting 'green' synthesis of LDH materials. It was noted that the synthesis of LDH with the use of these materials have previously proven to be challenging (Qu, Zhang, et al., 2015a). The study was divided up into two sections namely a 'parameter study' and a 'versatility study'. The 'parameter study' involved exploring the in influence of milling and experimental parameters, such as rotational speed, retention time, solids loading, bead size and jacket water temperature, on the synthesis of Mg-Al LDH. The raw materials selected were MgO and Al(OH)3 combined at a divalent to trivalent cationic ratio of 2:1. The parameters were individually investigated, with the exception of jacket water temperature as it was varied with a change in retention time and a change in rotational speed. Unless stated otherwise or under investigation, parameters were investigated at a set speed of 2000 rpm, jacket water temperature of 30 °C, solids loading of 10 %, retention time of 1 h and with 2 mm yttrium stabilised zirconia beads. Therefore when investigating a specific c parameter, the others remained as stated above. Comparatively the 'versatility' study further explores the synthesis of Mg-Al, Ca-Al, Cu-Al and Zn-Al LDH by adapting optimal synthesis conditions, derived from existing mechanochemical techniques and methods, to the selected process. These were related to the divalent to trivalent cationic ratio and selected starting materials. Ageing of the samples obtained through the 'versatility study' were further explored to determine if the potential for a two-step commercial process exists. The study was investigated at a set speed of 2000 rpm, jacket water temperature of 30 °C, solids loading of 10 %, retention time of 1 h and with 2 mm yttrium stabilised zirconia beads. Half of the sample collected was subjected to ageing at 80 °C for 24 h under atmospheric conditions. / Dissertation (MEng (Chemical Engineering))--University of Pretoria, 2020. / This research was funded by Techsparks (Pty) Ltd and the Technology and Human Resources for Industry Programme (THRIP) administered by the Department of Trade and Industry, South Africa, (grant number THRIP/133/31/03/2016) / Chemical Engineering / MEng (Chemical Engineering) / Unrestricted

In this work, a comparative electrochemical study has been performed to evaluate corrosion inhibition property of several film-forming corrosion inhibitors provide by Akzo Nobel on carbon steel in a chloride solution. For carbon steel exposed to 1 M NaCl solution with and without added inhibitor, electrochemical measurements including electrochemical impedance spectroscopy (EIS), linear polarization resistance (LPR) at different exposure time intervals, and potentiodynamic polarization at the termination of the exposure, have been performed to investigate the film forming process and to evaluate corrosion inhibition efficiency of the inhibitors, as well as its evolution with time. The corrosion resistance data obtained from the EIS and LPR measurements are in good agreement. The results indicate different inhibition properties of the inhibitors tested. The inhibition effect of SSF CI-1 is negligible in the first hour of exposure, but it increases steadily with time for 1 day, and then remains the same level during the exposure up to one week. SSF CI-2 exhibits a good inhibition effect in the first hour, but the effect decreases with time to a low level after 8 hours, and then increases again with prolonged exposure. SSF CI-4 shows a low inhibition effect during the first day, and then increases to a maximum level after three days’ exposure. For SSF CI-5 and SSF CI-6, the inhibition effect within 8 hours is relative low but higher than that of SSF CI-4, and the effect increases with time during prolonged exposure. The SSF CI-5 seems to be better than SSF CI-6 because of a more stable inhibition effect. The EIS results indicate that most of the inhibitors form a resistive surface film on carbon steel, which becomes more resistive and protective after several days’ of exposure. However, in the initial stage of exposure, the SSF CI-6 does not show an effect of formation of a resistive film on the surface. The potentiodynamic polarization measurements suggest that, SSF CI-1 and SSF CI-2 are anodic type inhibitor, SSF CI-4 is cathodic type inhibitor, and SSF CI-5 and SSF CI-6 are mix type inhibitor. Moreover, the inhibitors tested show a similar corrosion inhibition effect as mussel adhesive protein (MAP) at the low dosage level.

<p> Cellulose-based materials have been attracting significant attention in recent years for their potential as renewable and biodegradable materials. Cellulose nanofibrils (CNFs) in particular are readily attainable from woody biomass in high purity and without harsh chemical processes. These CNFs can undergo chemical surface modifications after a simple workup, imbuing them with new attributes that differ from their naturally paper-like structure and properties. In this research, CNFs are modified with oleic acid—another common biomass found in high concentrations in some vegetable oils—which transforms the naturally hydrophilic cellulose into a superhydrophobic material. This transformation can be carried out using solventless mechanochemistry and worked up in ethanol, supporting a green process from start to finish.</p> <p><br></p> <p>Since cellulose contains many free, exposed hydroxyl groups, carboxylic acids can be condensed onto exposed hydroxyls to form esters. In this research, we focus specifically on the oleic acid moiety because its internal alkene has potential for further reactivity. Here we explore methods to introduce crosslinks into esterified CNF (eCNF) for structural and mechanical reinforcement between fibrils. Several methods are attempted, including methods involving thiolene chemistry and epoxide ring opening.</p> <p><br></p> <p>Additionally, efforts have been made to develop a method to disperse eCNF materials in ethyl acetate for deposition by spray coating. Dispersions of eCNF in ethyl acetate are sufficiently stable to enable deposition using simple airbrushing tools. The eCNF coatings are homogenous, superhydrophobic, and have good adhesion to a wide variety of surfaces. </p>

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Le développement d’une nouvelle génération de catalyseurs dits biohybrides est basé sur l’association d’un complexe métallique et d’une protéine. D’un côté, le complexe métallique est responsable de l’activité catalytique ; de l’autre côté, la protéine protège le complexe métallique vis-à-vis de la dégradation en milieu aqueux et fournit également un environnement chiral propice à une catalyse énantiosélective. Ces catalyseurs fonctionnant de manière sélective en milieu aqueux s’inscrivent tout à fait dans les préceptes de la chimie verte.Une nouvelle famille de protéines artificielles, nommée αRep, a été récemment décrite. Toutes les protéines de la bibliothèque αRep présentent le même repliement en solénoïde incurvé, mais diffèrent à la fois en taille (nombre de motifs répétés) et dans la nature de 5 acides aminés par motif répété. Une surface variable est ainsi générée sur la surface concave du solénoïde. Ces protéines sont extrêmement stables et modifiables. La modularité de ces protéines ouvre la voie à un panel varié d’ingénierie des protéines, notamment la conception de catalyseurs artificiels.Au sein de la bibliothèque αRep, le variant αRep-A3 est une protéine homodimérique pour laquelle les surfaces concaves de chaque monomère génèrent une crevasse. Les résidus formant cette crevasse peuvent être modifiés sans affecter la structure tridimensionnelle de la protéine. Le but de cette thèse a été d’évaluer la capacité de la protéine αRep-A3 à procurer une architecture rigide pour l’incorporation de complexes de métaux de transition. Pour cela, différents ligands de métaux de transition (phénanthroline, terpyridine, porphyrine) ont été couplés covalemment à des variants de αRep-A3 à différentes positions. Des résultats encourageants concernant la réaction de Diels-Alder entre azachalcone et cyclopentadiène suggèrent que ce type d’architecture pourrait fournir une base intéressante pour la création de nouvelles classes de métalloenzymes entièrement artificielles. Des pistes pour l’amélioration des catalyseurs basés sur les αRep par des méthodes d’évolution dirigée sont alors avancées sur la base de ces résultats. / The development of a new generation of so-called biohybrid catalysts is based on the association of a metal complex and a protein. On the one hand, the metal complex is responsible for the catalytic activity; On the other hand, the protein protects the metal complex from degradation in aqueous medium and also provides a chiral environment conducive to enantioselective catalysis. These catalysts, which function selectively in an aqueous medium, fit perfectly into the precepts of green chemistry.A new family of artificial proteins, called αRep, has recently been described. All proteins in the αRep library exhibit the same curved solenoid folding, but differ in size (number of repeating units) and in the nature of 5 amino acids per repeat unit. A variable surface is thus generated on the concave surface of the solenoid. These proteins are extremely stable and modifiable. The modularity of these proteins paves the way for a varied panel of protein engineering, including the design of artificial catalysts.Within the αRep library, the variant αRep-A3 is a homodimeric protein for which the concave surfaces of each monomer generate a crevice. The residues forming this crevice can be modified without affecting the three-dimensional structure of the protein. The aim of this thesis has been to evaluate the ability of the αRep-A3 protein to provide a rigid scaffold for the incorporation of transition metal complexes. To this end, various transition metal ligands (phenanthroline, terpyridine, porphyrin) have been covalently coupled to variants of αRep-A3 at different positions. Encouraging results regarding the Diels-Alder reaction between azachalcone and cyclopentadiene suggest that this type of scaffold could provide an interesting basis for the creation of new classes of fully artificial metalloenzymes. From these results, lines of improvement for αRep-based catalysts by means of directed evolution are then advanced.

京都大学 / 0048 / 新制・課程博士 / 博士(人間・環境学) / 甲第21178号 / 人博第850号 / 新制||人||203(附属図書館) / 29||人博||850(吉田南総合図書館) / 京都大学大学院人間・環境学研究科相関環境学専攻 / (主査)教授 吉田 寿雄, 教授 内本 喜晴, 教授 田部 勢津久 / 学位規則第4条第1項該当 / Doctor of Human and Environmental Studies / Kyoto University / DFAM

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