Thesis (Ph. D.)--University of California, Riverside, 2009. / Includes abstract. Available via ProQuest Digital Dissertations. Title from first page of PDF file (viewed March 20, 2010). Includes bibliographical references. Also issued in print.

This dissertation focuses on two areas of garnet porphyroblast crystallization that have until now remained largely uninvestigated: epitaxial nucleation of garnet porphyroblasts and yttrium and rare earth (Y+REE) uptake in metamorphic garnet. The mechanism of epitaxial nucleation is explored as a step towards determining which aspects of interfaces are significant to interfacial energies and nucleation rates. Garnet from the aureole of the Vedrette di Ries tonalite, Eastern Alps, shows a clear case of epitaxial nucleation in which garnet nucleated on biotite with (110)grt / (001)bt with [100]grt / [100]bt. The occurrence is remarkable for the clear genetic relationships revealed by the microstructures and for its preservation of the mica substrate, which allows unambiguous determination of the coincident lattice planes and directions involved in the epitaxy. Not all epitaxial nucleation is conspicuous; to increase the ability to document epitaxial relationships between garnet and micas, I develop and apply a method for determining whether evidence for epitaxial nucleation of garnet is present in porphyroblasts containing an included fabric. Although the magnitude of uncertainties in orientation measurements for garnets from Passo del Sole (Switzerland), the Nevado Filabride Complex (Spain), and Harpswell Neck (USA) preclude definitive identification of epitaxial relationships, the method has potential to become a viable technique for creating an inventory of instances and orientations of epitaxial nucleation with appropriate sample selection. Using lattice-dynamics simulations, I explore the most commonly documented epitaxial relationship, (110)grt / (001)ms. The range of interfacial energies resulting from variations in the intracrystalline layer within garnet at the interface, the initial atomic arrangement at the interface, and the rotational orientation of the garnet structure relative to the muscovite structure shows that the intracrystalline layer within garnet has the greatest effect on interfacial energy. A complete understanding of the role of intergranular diffusion for yttrium and rare-earth-element uptake in porphyroblastic garnet is critical because the complexities of Y+REE zoning in garnets and the mechanisms of Y+REE uptake have implications for petrologic interpretations and garnet-based geochronology. Y+REE distributions in garnets from the Picuris Mountains (USA), Passo del Sole (USA), and the Franciscan Complex (USA) imply diverse origins linked to differing degrees of mobility of these elements through the intergranular medium during garnet growth. / text

The broad objective of my research is to investigate the physical characteristics and interactions of macromolecules and nanoparticles, and the corresponding effects on their phase separation behavior using static and dynamic light scattering (SLS & DLS). Light scattering provides a non-invasive technique for monitoring the in-situ behavior of solutes in solution, including solute interactions, sizes, shapes, aggregation kinetics and even rheological properties of condensed phases. Initially, we investigated lysozyme solutions for the presence of preformed aggregates and clusters that can distort the kinetics of protein crystal nucleation studies in this important model system for protein crystallization. We found that both undersaturated and supersaturated lysozyme solutions contained population of large, pre-existing protein aggregate. Separating these clusters and analyzing their composition with gel chromatography indicated that these clusters represented pre-formed lysozyme aggregates, and not extrinsic protein contamination. We investigated the effect of chaotropic versus kosmotropic ions (water structure breakers vs. structure makers) on the hydration layer and hydrodynamic interactions of hen egg white lysozyme. Surprisingly, neither chaotropic nor kosmotropic ions affected the protein hydration layer. Salt-effects on direct and hydrodynamic protein interactions were determined as function of the solutions ionic strength and temperature. Using both static and dynamic light scattering, we investigated the nucleation of gold nanoparticles forming from supersaturated gold sols. We observed that two well separated populations of nuclei formed essentially simultaneously, with sizes of 3nm vs. several tens of nanometer, respectively. We explore the use of lysozyme as tracer particle for diffusion-base measurements of electrolyte solutions. We showed that the unusual stability of lysozyme and its enhanced colloidal stability enable viscosity measurement of salts solutions at high salt concentration, over a wide range of pH values and temperatures for the common tracer particle polystyrene flocculates. We applied dynamic light scattering to measure the viscoelastic responses of polystyrene probe particles embedded in solutions and gels of two different polymers: polyacrylamide (PAAm) and poly-N-isopropylacrylamide (poly-NiPAAm).

The physical stability of guaifenesin in melt-extruded acrylic matrix tablets was investigated. The initial study found that recrystallization was caused by guaifenesin supersaturation in Eudragit[Trademark] L100-55, and that the instability was confined to tablet surfaces. Drug release was not affected by crystal growth as guaifenesin is very water soluble. The addition of a polymer in which guaifenesin showed a higher solubility to the matrix blend decreased recrystallization on storage as supersaturation levels dropped. The second investigation identified heterogeneous nucleation as an additional factor in guaifenesin recrystallization. A quantitative assay showed that talc in matrix tablets accelerated the onset and extent of the recrystallization due to a nucleating effect on guaifenesin. Storage under elevated humidity conditions promoted recrystallization as well, but crystal growth was not correlated with water uptake, which implied a nucleating effect of moisture on guaifenesin. The third study investigated the effect of aqueous film-coating of the matrix tablets to stabilize amorphous guaifenesin using either hypromellose or ethylcellulose as coating polymers. The selection of the coating polymer influenced crystal morphology, and was a major factor in delaying the onset of crystallization, ranging from 1-3 weeks (ethylcellulose film-coatings) to 3-6 months (hypromellose film-coatings). Higher weight gains retarded recrystallization. Factors promoting drug and polymer diffusion, such as long curing times and elevated temperatures during both curing and storage, incomplete film coalescence and high core drug concentrations all resulted in an earlier onset of crystallization. The effects of single-screw extrusion (SSE) and twin-screw extrusion (TSE) of diltiazem hydrochloride and guaifenesin-containing blends in Eudragit[Trademark] L100-55 on drug morphology and dispersion were studied in the fourth project. Guaifenesin solubilized diltiazem hydrochloride, and plasticized Eudragit[Trademark] L100-55. Extrusion temperature influenced the drug morphology in single-screw extrudates, while TSE rendered all formulations amorphous due to higher dispersive mixing capabilities. Drug distribution improved with extrusion temperature and by TSE over SSE. Homogeneous matrices showed the slowest drug release at pH 1.0. Recrystallization was inversely correlated to drug distribution. In conclusion, the physical stability of guaifenesin in hot melt-extruded acrylic matrix tablets was shown to be affected by formulation, processing and post-processing factors. / text

Understanding when hydrates will nucleate has notable importance in the area of flow assurance. Attempts to model hydrate formation in subsea pipelines currently requires an arbitrary assignment of a nucleation subcooling. Previous studies showed that sII hydrate containing a model water-soluble former, tetrahydrofuran, would nucleate over a narrow temperature range of a few degrees with constant cooling. It is desirable to know if gas phase hydrate formers, which are typically more hydrophobic and hence have a very low solubility in water, also exhibit this nucleation behavior. In this study, differential scanning calorimetry has been applied to determine the hydrate nucleation point for gas phase hydrate formers. Constant cooling ramps and isothermal approaches were combined to explore the probability of hydrate nucleation. In the temperature ramping experiments, methane and xenon were used at various pressures and cooling rates. In both systems, hydrate nucleation occurred over a narrow temperature range (2-3°C). Using methane at lower pressures, ice nucleated before hydrate; whereas at higher pressures, hydrate formed first. A subcooling driving force of around 30°C was necessary for hydrate nucleation from both guest molecules. The cooling rates (0.5-3°C/min) did not show any statistically significant effect on the nucleation temperature for a given pressure. The isothermal method was used for a methane system with pure water and a water-in-West African crude emulsion. Two isotherms (-5 and -10°C) were used to determine nucleation time. In both systems, the time required for nucleation decreased with increased subcooling.

Microorganisms have developed ways to preserve cellular functions under low temperature conditions using a variety of biochemical adaptations including the modification of ice formation. In order to conduct a limited survey of microbial ice-associating strategies, a bacterial community associated with frost-exposed leaves was assessed by the construction of a 16S rDNA library, followed by the characterization of some isolates. Fifteen different species were identified based on their 16S rDNA. Among these, Pseudomonas syringae J6 had ice nucleation activity (INA), which promoted ice formation close to 0ºC, whereas Erwinia billingiae, Flavobacterium sp. and Sphingobacterium kitahiroshimense inhibited the recrystallization of small ice crystals at temperatures close to melting. The Erwinia billingiae isolate showed adhesive and swarming behaviour, which can be associated with biofilm formation. Visualization using negative staining, transmission electron microscopy and scanning electron microscopy confirmed the presence of flagella in addition to the presence of slimy biofilm architecture in these Erwina billingiae cultures. Subsequent purification of the extracellular polymeric substance followed by mass spectrometry allowed the identification of a putative outer membrane protein A, which may be involved in the protection of this bacterium to freeze-thaw cycles. To further explore bacterial ice nucleation activity, an ice nucleation protein was cloned from Pseudomonas borealis, a bacterium originating from tundra soil, using degenerative PCR and chromosome walking. The sequence of the putative ice nucleation protein gene (inaPb) was cloned and expressed in Escherichia coli, and its identification was confirmed in the recombinant cells. Although the INPPb was more divergent than other plant-related bacterial INPs, it retained the highly conserved, repetitive core region. The protein may fold so that it has two flat faces, one for protein-protein interactions and the other for ice binding. Expression of the INPPb coding region fused to jelly fish green fluorescent protein showed a temperature-dependent polarized distribution of the recombinant protein in E. coli. In summary, results from this thesis suggests that low temperature survival may be associated with a number of ice-associating adaptations including the presence of biofilm formation in Erwina billingiae amongst other bacteria, INA in P. borealis and INA-expressing recombinant E. coli. / Thesis (Ph.D, Biology) -- Queen's University, 2010-01-27 11:47:02.385

Microbes have a remarkable ability to adapt to a host of environmental stressors, including low temperature, high pressure and osmotic stresses. The adaptations of resistant microbes to low temperatures are varied, and may include the accumulation of solutes to maintain osmotic balance, the production of antifreeze proteins (AFPs) or ice nucleation proteins (INPs) to manipulate ice growth or formation. AFPs depress the freezing point, inhibit ice recrystallization, and have been reported to inhibit or delay the growth of gas hydrates. Conversely, INPs precipitate ice formation at relatively high subzero temperatures. Collectively, these activities can be described as ‘ice-association’ activities. Here, ice-affinity and/or freeze-thaw cycling were used to either select for isolates with ice association properties or to assess the low temperature resistance of microbial consortia derived from various environments. Ice-affinity successfully selected psychrotolerant microbes from cultured temperate and boreal soils, some of which had been previously reported in glaciers and Arctic/Antarctic sites. Many of the recovered microbes demonstrated ice-association activities. Freeze-thaw selection also greatly decreased the abundance and diversity of consortia from distinct sites, and allowed the recovery of individual isolates, many of which demonstrated ice-association. Freeze-thaw selection was also used to assess the role of cross-tolerance between osmotic and freeze-thaw stresses, based on the common challenge of desiccation. Microbial consortia from lakes with varying degrees of salinity were subjected to freeze-thaw stress, and the consortia from more saline lakes tended to show greater low temperature resistance. While few of the recovered microbes demonstrated ice-association activities, those from the more saline lakes tended to contain a higher intracellular solute concentration and were more likely to form biofilms. This underscores the diversity of resistance strategies and supports the notion of cross-tolerance. To determine if these selective regimes would have applications for hydrate growth inhibition, microbes derived from an oil well sample were subjected to freeze-thaw stress. Selection reduced microbial abundance, shifted the diversity, and resulted in the recovery of microbes with some ice-association activity. Taken together, this thesis demonstrates that the application of low temperature stress can be used to successfully investigate stress resistance mechanisms within microbial communities from distinct environments. / Thesis (Ph.D, Biology) -- Queen's University, 2010-09-21 15:58:14.932

The main aim of this work is to investigate heterogeneous nucleation of solidification of metals and alloys by a combination of differential scanning calorimetry and transmission electron microscopy using a newly modified entrained particle technique. Attention is focused on investigating (a) heterogeneous nucleation of Cd, In and Pb particle solidification by Al in rapidly solidified Al-Cd, Al-In and Al-Pb binary alloys; (b) effects of various ternary additions such as Mg, Ge and Si on heterogenous nucleation of solidification of Cd and Pb solidification by Al; (c) heterogenous nucleation of solidification of Si by solid Al in hypoeutectic Al-Si alloys. In addition, the melting behaviour of Cd, In and Pb particles embedded in an Al matrix is investigated. The rapidly solidified microstructures of melt spun Al-Cd, Al-In and Al-Pb alloys consist of faceted 5-200nm diameter Cd, In and Pb particles homogeneously distributed throughout an Al matrix. Cd particles exhibit an orientation relationship with the Al matrix which can be described as {111}_Al//{0001}_Cd and andlt;110andgt;_Al//andlt;112and#773;0andgt;_Cd, and In and Pb particles exhibit a near cube-cube and cube-cube orientation relationship with the Al matrix respectively. Cd, In and Pb particles embedded in the Al matrix exhibit distorted truncated octahedral or truncated octahedral shapes surrounded by {111}_Al and {100}_Al facets. The solid Al-solid Cd, solid Al-solid In surface energy anisotropies are constant over the temperature range between room temperature and Cd and In melting points respectively. The solid Al-liquid Cd and solid Al-liquid In surface energy anisotropies decrease with increasing temperature above Cd and In melting points. Solidification of Cd, In, Pb particles embedded in an Al matrix is nucleated catalytically by the surrounding Al matrix on the {111}_Al faceted surfaces with an undercooling of 56, 13 and 22K and a contact angle of 42°, 27° and 21° for Cd, In and Pb particles respectively. Addition of Mg to Cd particles embedded in Al increases the lattice disregistry across the nucleating plane, but decreases the undercooling before the onset of Cd(Mg) particle solidification. Addition of Ge to Al decreases the lattice disregistry across the nucleating plane, but increases the undercooling before the onset of Pb particle solidification embedded in the Al(Ge) matrix. These results indicate that chemical interactions dominate over structural factors in determining the catalytic efficiency of nucleation solification in Al-Cd-Mg and Al-Pb-Ge alloys. Contact between Si precipitates and Pb particles embedded in an Al matrix decreases the undercooling before the onset of Pb particle solidification. The equilibrium melting point of Cd particle in the melt spun Al-Cd alloy is depressed because of capillarity, and the depression of equilibrium melting point increases with decreasing particle size. In the melt spun Al-In and Al-Pb alloys, however, most of the In and Pb particles embedded within the Al matrix grains are superheated, and the superheating increases with decreasing particle size. The heterogeneous nucleation temperature for Si solidification by Al depends sensitively on the purity of the Al. Na and Sr additions have different effects on the Si nucleation temperatures. With an Al purity of 99.995%, Na addition increases the Si nucleation temperature, while Sr addition does not affect or decreases the Si nucleation undercooling, depending on the amount of Sr addition. The solidified microstructure of liquid Al-Si eutectic droplets embedded in an Al matrix is affected by the Si nucleation undercooling. With low Si nucleation undercooling, each Al-Si eutectic liquid droplet solidifies to form one faceted Si particle, however, with high Si nucleation undercooling, each Al-Si eutectic liquid droplet solidifies to form a large number of non-faceted Si particles embedded in Al.

Ice crystals in clouds frequently form upon a subset of aerosol particles called ice nuclei (IN). IN influence cloud ice crystal concentrations, consequently affecting cloud lifetime and reflectivity. The present understanding of these effects on climate is hindered by limited data on the global distribution of IN. This thesis presents measurements of deposition-mode IN concentrations under conditions relevant to mid-level clouds, 238 K and 138% RHi. at two Canadian sites: Toronto, a major city, and Whistler, a pristine coniferous rainforest. In Toronto, chemically-resolved surface areas were estimated by single-particle mass spectrometry and regressed against IN concentrations to identify a significant relationship between IN concentrations and both carbonaceous aerosols (EC and/or OC) and dust. In Whistler, IN concentrations during a biogenic secondary organic aerosol (SOA) event did not increase from background levels (0.1 /L), suggesting that biogenic SOA particles do not nucleate ice under these conditions.

The indirect aerosol effect contributes to major uncertainties in determining the radiation budget of the earth. A large uncertainty is due to the formation of ice clouds onto natural or anthropogenic aerosols. Field studies have shown that mineral type particles are often associated with ice crystals in the mid-upper troposphere and given the long residence time in the atmosphere of dust particles (~2 weeks in the absence of precipitation), their contribution to ice formation processes is not fully defined. In order to probe ice formation onto natural mineral dust in a setting where it could be suspended as aerosol, a new continuous flow diffusion chamber (CFDC) was built. This allowed investigations of the effects of total aerosol surface area and particle size. The CFDC was also used in an international inter-comparison of ice nucleation instrumentation to compare efficiencies of soot, biological aerosol (bacteria) and samples of natural desert dusts from different regions of the world. The laboratory observations were parameterized using nucleation rates (Jhet) and contact angles () as described by classical nucleation theory. For both this experimental technique and a static one developed during the candidate’s Masters degree, mineral dust particulate proved to be the most efficient ice nuclei (IN) activating at RH with respect to ice (RHi) as low as 105% at T = 233 K. The efficiency varied with particle size and aerosol surface area (SA). Large particles or higher SA activated at lower RHi than small particles or lower SA. The static chamber was sensitive to the first ice event out of a large SA and therefore gave true onset RHi, which was lower than the onset defined by the CFDC studies, which was not sensitive to a single ice event. In addition the static chamber used a broader size range of particulate matter, including super micron particles while the CFDC particles sizes were restricted to below 0.5 µm. Soot and organic coated dust particles were inefficient IN compared to pure dust. Soot aerosols showed some efficiency at T < 233K where deposition ice formation was apparent. The hygroscopic organics had intermediate ice activity between dusts and alkyl-organics and soot. Bacteria aerosols were active in the deposition mode for T as high as 247 K. Contact angles () computed for ice germs forming onto natural mineral dust were small, 7<  < 29, at 223 K for RH ranging from ice to water saturation. It was concluded that there is no single value for the onset of ice formation in the atmosphere via deposition freezing. The associated contact angles show that there is a distribution of active sites on IN and that not all active sites have the same affinity for initiation of ice formation even within the same aerosol type. This work provides evidence that deposition mode nucleation can be an alternate pathway to homogeneous nucleation when mineral aerosols are present in the troposphere since the high T - low RH conditions required for deposition mode nucleation are more easily encountered in the atmosphere than the low T - high RH required for homogeneous nucleation.