The Eurasian woodcock Scolopax rusticola (hereon woodcock) is a wader adapted to woodland and farmland habitats. It is an important quarry species, widely hunted across Europe, but owing to its cryptic plumage and elusive nature, there exists only poor information concerning its natural history. As such, the conservation status of the woodcock remains uncertain. One area that is particularly lacking is knowledge of its ecology outside the breeding season. Generally, avian ecological studies have focused on breeding season events due to the importance of reproductive success in determining fitness. However, it is now apparent that the non-breeding season represents an equally important period of the annual cycle. For example, recent studies have shown that declines in some migratory bird populations were due to events during the non-breeding season, either during migration, or on the wintering grounds. In Britain, the non-breeding woodcock population comprises both British breeding and non-British breeding birds, yet the origins and relative distribution of these sub-populations is not fully understood. Nor is it known whether ecological differences exist between them. This thesis addresses these two aspects of woodcock biology, using stable isotope and radio-tracking methods. The former was used to assign birds to their likely origins and determine population-specific distributions across Britain. The latter was used, in conjunction with the former, to determine whether ecological differences exist between locally-breeding and non-locally breeding birds residing in Hampshire in winter. A large degree of mixing between birds from different breeding populations was apparent for woodcock residing in Britain over winter. Russia and Fennoscandia comprised the most likely origins of migratory birds and regional differences in distributions were apparent. The highest proportions of birds from Russia were found in Norfolk and Wales, whilst the highest proportions of birds from Fennoscandia were found in Scotland. The presence of non-breeding residents in Cornwall and Ireland also provided strong evidence for the short-distance, south-westerly movements of resident birds, which probably originated from Scotland. Locally, the movements and behaviour of birds were found to vary with age (adult vs. juvenile) and/or predicted migratory status (resident vs. migrant), with adult residents potentially representing the dominant group. Differences in habitat use, commuting flights, home range size and activity patterns were all apparent. As such, these findings might have important consequences for the relative survival rates and breeding success of resident and migrant woodcock. This work has provided new insights into the non-breeding ecology of woodcock in Britain and contributes significantly to European efforts to better understand this bird species. Given the importance of seasonal interactions, an understanding of events throughout the annual cycle is necessary and this can only be achieved through concerted efforts. Indeed, an integrated approach is imperative to develop the conservation plans necessary to ensure the sustainability of the woodcock.

This project addressed if decaying macroalgae and leaf detritus play a major role in the detrital pool of a 7th-order karst riverine system. Decay rates, macroinvertebrates colonization patterns, and change in δ13C values of Cladophora, Platanus occidentalis, and a mix of Acer negundo and A. saccharinum were tracked during summer and autumn months for portions of multiple years. Packs of air-dried Cladophora, Acer, and P. occidentalis were placed in mesh bags and put in groups (n=4) in wire baskets. Seven baskets were submerged in riffle (0.5 m) and deeper run (2 m) habitats. Benthic organic matter was collected with each pack to see if there was a correlation with δ13C signatures of decaying macroproducers to help understand what is entering the detrital food web. Summer 2014 Cladophora and Acer were significantly faster to breakdown than Platanus in both habitats. In autumn‒spring 2014‒2015, Cladophora was significantly faster to breakdown than leaves. Isotopic values of Cladophora were not significantly different than leaves in summer 2014 but were significantly more δ13Cdepleted in the autumn‒spring 2014‒2015. There were no significant differences in macroinvertebrate abundance between the macroproducers for either season. Cladophora had significantly lower macroinvertebrate richness in both seasons, lower shredder abundance, but a significantly higher abundance of clingers. The mean δ13C values of benthic detritus were significantly different than all three macroproducers in the summer and significantly different than Cladophora in the run treatment for autumn‒spring. Seasonality had a strong influence on breakdown rates, leading to greater mass loss of all three species in the warm summer months compared to the cooler autumn‒spring months. The low macroinvertebrate richness and shredder abundance on the decaying macroalga suggests Cladophora may not be consumed by macroinvertebrates but used strictly as habitat. The implication of rapid Cladophora decay during warm seasons, plus few colonizing macroinvertebrate taxa, is that the decaying macroalgae may not pass through a decomposer food web before being remineralized as CO2.

Recent observed changes in bird distributions provide an unprecedented opportunity to gain a deeper understanding of the processes that influence species' persistence. By modelling presence-absence data from the North American Breeding Bird Survey, we found evidence that the breeding range of the western burrowing owl has contracted at its northern, western, and eastern boundaries since 1967. We suggest that the species' breeding distribution is also expanding southwards to former wintering grounds into northern Mexico, facilitated by the appearance of new breeding habitat created by irrigated agriculture in the arid areas of southwestern United States and northwestern Mexico. This dissertation explores the hypothesis that burrowing owls from northern migratory populations have become resident breeders in areas of northwestern Mexico that were formerly used only by migratory owls during winter, contributing to both population declines near the northern extent of the species' breeding range and population increases in the southern half of the species' range. We used novel DNA microsatellite markers to test patterns of gene flow predicted by this migration-mediated range-shift hypothesis. We genotyped 1,560 owls from 36 study locations in Canada, Mexico, and the United States. Analyses of molecular variance provided evidence that burrowing owl populations in both northwestern Mexico and Canada are genetically different from the rest of the populations in the breeding range, lending some support to the migration-mediated range-shift hypothesis. We found evidence of subtle genetic differentiation associated with subtropical irrigated agricultural areas in southern Sonora and Sinaloa, demonstrating that land use can produce location-specific population dynamics leading to genetic structure even in the absence of dispersal barriers. We also used stable isotopes 2/H, 13/C, and 15/N in feathers to test philopatry and breeding dispersal patterns predicted by this migration-mediated range-shift hypothesis. Burrowing owl populations near the northern edge of the species' breeding range had a high proportion of immigrants compared to interior populations, while other populations had high levels of philopatry. Stable isotopes also provided evidence of breeding dispersal events from Canadian populations to northwestern Mexico in support of the migration-mediated range-shift hypothesis, but similar isotope signatures in nestling feathers between these two regions prevent stronger inferences.

The spatial ecology of a species underpins an array of important questions about the ecology and evolution of a species, relating for instance to sociality, population dynamics, geographical distribution or genetic partitioning. Furthermore, the understanding of the spatial ecology of a species also has important implications for conservation and for disease management. It is in this context that I have examined the spatial ecology of the serotine bat (Eptesicus serotinus), in Europe, and especially at the northern limit of its distribution in England, using population genetic and stable isotope analyses. Data from nuclear microsatellite markers indicated higher levels of gene flow on the continent than in England. Consistent with this, England was separated into three genetically distinct populations, inter-connected by male-driven gene flow. Substantial asymmetric gene movement over the English Channel was inferred, possibly indicating a northward and westward range expansion. Mitochondrial DNA revealed fast population expansion and strong female philopatry. Moving to finer scale, δ13C in wing tissue and fur revealed that the association of individuals at roosts is flexible and dynamic, possibly reflecting their membership to communities operating at larger geographic scales. Communities of E. serotinus seem therefore to create a network of roosts with individuals continually re-assorting among themselves both within and across breeding seasons. The integration of the genetic and isotopic data highlighted complex spatial, social and temporal interactions in this species. While individual associations within communities seem to be flexible, communities were found to be strongly segregated over the breeding season. In contrast, genetic connectivity operates on a larger geographical scale than the local summer landscape. Together, these findings help explain the apparent absence in the UK of the European Bat Lyssavirus 1 (EBLV-1) for which this species is the main host. Hence, the relative fragmentation of this low-density population may inhibit the virus’ spread. However, with regular immigration from the continent, EBLV-1 could eventually enter the UK.

Lakes play an important role in the global carbon (C) cycle as they process carbon from terrestrial (allochthonous) and within lake (autochthonous) sources and may store C over long periods of time. Some arctic lakes contain high concentrations of dissolved organic carbon (DOC) that does not absorb light and thus remains colourless. The origin of this DOC remains unknown, but the sediment of these lakes have been suggested to accumulate primarily autochthonous (algal) C. I developed an experimental chamber for hydrogen (H) isotope pre-treatments and applied a novel H isotope tracing approach to determine the origin of the DOC and sediment C of a lake on SW Greenland known to contain colourless DOC. I hypothesized that autochthonous C was the prime source of DOC and sediment C, in line with previous theories. Analyses of algae and soil samples from the catchment revealed that local allochthonous and autochthonous C sources had a δ2H composition of -139 ‰ and -209 ‰, respectively. In contrast to my hypothesis, the analysed DOC had a mean δ2H isotopic composition of -147 ‰ indicating a dominance (ca 80-90 %) of allochthonous C. Similarly, the sediment had a mean δ2H isotopic composition of -155 ‰, suggesting that about 84 % of the C accumulating in the sediment was derived from terrestrial sources. The terrestrial origin was supported by field observations of high DOC seepage water (up to 70 mg L-1) with uncharacteristically low light absorption values entering the lake during high precipitation events. My results indicate that terrestrial processes are fundamental C sources for arctic lakes, even in regions with very low precipitation.

To evaluate the niche of coastal fish populations in the Beaufort Sea, stable isotopes (SI) and fatty acids (FA) were used to characterize species-specific niches, niche overlaps and resource partitioning (nicheROVER) of the Shingle Point fish populations. Fishes were grouped into three isotopic groups: marine, coastal, and freshwater (Ward’s clustering analysis), and five dietary groupings (using FA), where benthic feeding strategies were prevalent (correspondence analysis). Niche metrics were used to evaluate if total mercury (THg) could contribute complementary trophic information (residual permutation procedure (RPP)). Three THg groups (high, intermediate, low) were identified (boxplot analysis). High THg was identified in high trophic and benthic feeders, high THg ranges were observed in species with large niche sizes, high trophic feeding, and freshwater influences (RPP). The bioavailability of freshwater introduced THg to marine biota was assessed, however further research needs to be performed. Combining dietary indicators SI, FA, and THg, allowed for the characterization of the diet and habitat use of coastal fish populations, better understanding of the niches of these species, and developed baseline information for future monitoring in an MPA, as climate change continues to effect the Beaufort coastal environment. / February 2017

Capelin (Mallotus villosus (Müller, 1776)) is an important marine forage fish species that typically inhabits sub-Arctic and temperate circumpolar waters. Capelin have recently been reported in greater abundance in Arctic regions, and are considered an indicator for warming climate in the northern marine ecosystem. The goal of this thesis is to examine intrinsic factors among capelin populations, and whether niche overlap among sympatric capelin and Arctic cod (Boreogadus saida (Lepechin, 1774)) will affect the abundance and persistence of capelin in the Arctic as temperatures continue to rise. Life history comparisons of capelin from two Arctic regions (Western Beaufort Sea, Cumberland Sound) relative to a sub-Arctic population (Newfoundland) show that body size, body condition, growth rate and age-at-maturity vary among these regions. Life history characteristics that are adapted to northern environments and increasing temperatures will allow the presence and persistence of this species to increase in the Arctic. The consequence of increased abundance of capelin in the Arctic environment could be competition between capelin and Arctic cod, an Arctic species within a similar dietary niche. Stomach contents indicated that both species feed primarily on calanoid copepods and this result was corroborated with high dietary overlap in isotopic bivariate space (carbon and nitrogen stable isotopes). The occurrence of capelin is expected to increase in the Arctic with rising temperatures, thus adaptation in life history traits in capelin specific to each region may facilitate increased abundance and persistence, and possibly contribute to competitive pressure on Arctic cod. Potential competition will be particularly important in nearshore and shelf habitats where shifts in availability of intermediate trophic level taxa will influence diet and distribution of key predators such as beluga, sea birds, and anadromous fishes. As the Arctic environment changes with climate shifts, newly adapted or dispersed species from sub-Arctic systems are expected to drive shifts in ecosystem structure and function in the marine environment. / October 2016

A dissertation submitted to the Faculty of Science, University of the Witwatersrand, Johannesburg, in fulfilment of requirements for the degree of Master of Science. Johannesburg, 2016. / Stable isotope analyses have been used to infer diets of organisms, define trophic partitioning, and infer geographic origins of species. It has further been applied to forensic ecology to infer the origins of deceased humans and illegally traded animal (elephant ivory and rhinoceros horn) and plant (cycads, coca, and cannabis) material. However, no research has focused on the isotope analysis of avian material in forensic ecology. African grey parrots Psittacus erithacus are one of the most traded species in the world, with the trade often being illegal, and the origins of confiscated or deceased specimens being unknown. The aim of this study was to determine if stable isotopes (δ 13C, δ 15N, and δ 2H) in African grey parrot feathers could be used to determine the wild or captive origins of birds. African grey parrot feathers (primary, body, and tail) differed isotopically so standardising isotope values of African grey parrot feathers to a single feather type was recommended, to maintain consistent sampling and allow for comparisons to be drawn between different feather types. African grey parrot feathers from unknown origins can be identified as wild or captive using δ 13C and δ 2H values, but not δ 15N values. Known wild and captive feathers possibly differ isotopically from one another because of dietary and location differences. Wild African grey parrots inhabit and feed in isotopically depleted C3 forests compared to captive African grey parrots which are usually fed C4 based foods with more positive isotope values. Wild African grey parrot δ 2H isotope values were the most negative in the central region of their native distribution. The ability to differentiate wild from captive African grey parrots, as well as infer basic origins (East from West Africa) may improve the monitoring of the illegal trade as well as help in tracing illegally traded parrots. / LG2017

O delta do rio Tubarão, situado na costa centro-sul catarinense entre os municípios de Tubarão, Jaguaruna e Laguna, constitui raro exemplo de delta lagunar ativo no Brasil. Sua planície deltaica cobre área aproximada de 250km2, onde são encontradas evidências de migração de canais fluviais dadas por séries de truncamentos de antigos distributários, alguns ainda ativos. Dez testemunhos foram obtidos junto aos principais canais distributários do rio Tubarão, a partir dos quais foram realizadas análises de fácies, granulométrica, de minerais pesados, de teor de matéria orgânica e de relações químio-isotópicas, além de datações 14C. Também foram levantados acervos históricos de fotografias aéreas e de dados de prospecção mineral de subsuperfície. Cerca de 5000 anos atrás, na região de seu ápice, próximo ao rio tributário Capivari de Baixo, o delta do rio Tubarão ingressou numa antiga baía lagunar e ramificou-se em sete distributários principais que, desde seus momentos iniciais de migração, foram controlados por avulsões autogênicas rumo a antigas depressões do fundo da bacia receptora. Tais avulsões progradaram o delta inicialmente para SW, depois para ENE, e então para NNE, favorecendo a fragmentação da antiga baía lagunar em uma série de lagos e lagunas menores. Diante deste cenário dinâmico, sambaquis foram erigidos no entorno do sistema lagunar, constituindo importantes registros arqueológicos de interação entre evolução sedimentar e ocupação humana pré-histórica. O resultado das análises granulométricas indicou que a sedimentação deltaica, nas proximidades de encostas de morros, foi misturada com colúvio e/ou depósitos de fluxos gravitacionais, como evidenciado pela presença de intervalos texturalmente muito imaturos em alguns testemunhos. Em relação à análise de minerais pesados, o principal fator de controle nas variações da assembleia em depósitos de delta e de bacia é a proveniência sedimentar. Em termos mediatos, essa proveniência reflete fontes plutônicas e metamórficas (médio a alto grau) do Batólito de Florianópolis (e xenólitos associados) e do Complexo Granito-Gnáissico, e rochas arenáceas alteradas da Bacia do Paraná. Em termos imediatos, depósitos deltaicos destacam-se pela afinidade mineralógica com as areias do rio Tubarão, inferida sobretudo a partir da presença mútua de grãos alterados de cianita e estaurolita, enquanto que depósitos da bacia lagunar destacam-se por sua similaridade mineralógica com areias dos rios tributários Braço do Norte e Capivari de Baixo, neste caso principalmente pela presença de zircão. A matéria orgânica presente nos depósitos do delta e de sua bacia receptora resulta do aporte de fontes terrestres (fornecido pelos rios) e marinhas (trazido via desembocaduras lagunares), fato que é evidenciado pelos resultados de \'delta\'\'POT.13 C\', \'delta\'\'POT.15 N\' e razão \'C IND.ORG\'/\'N IND.TOTAL\'. Particularmente, nos sedimentos da bacia, variações entre diferentes tipos de matéria orgânica têm ocorrido ao longo do Holoceno, as quais são atribuídas tanto ao isolamento físico progressivo do sistema lagunar em relação ao mar aberto como por mudança climática regional (aumento destacado de precipitação). A análise isotópica de oxigênio (\'delta\'\'POT 18 O\') de conchas de moluscos em depósitos da bacia indicou enriquecimento relativo em \'ANTPOT.16 O\' durante o Holoceno. Este resultado, a exemplo daquele dos isótopos de carbono e de nitrogênio dos sedimentos, sugere isolamento gradual das águas lagunares em relação às de mar aberto. / The Tubarão river delta, located on the centre-south coast of Santa Catarina State, among the municipalities of Tubarão, Jaguaruna and Laguna, is rare example of active lagoonal delta in Brazil. Its delta plain covers an area of about 250km2, where there are evidences of migration of fluvial channels in a set of truncations of ancient distributaries, some of these still in activity. Ten cores were acquired adjacent to the main distributary channels of the Tubarão river, from which analyses of facies, grain size, heavy minerals, organic matter, chemistry-isotope ratios, and radiocarbon datings were performed. Also, aerial photographies and data of subsurface mining were surveyed from historical collections. Thereabout 5,000 years ago, in the region of its apex, near Capivari de Baixo tributary river, the Tubarão river delta entered an ancient lagoonal bay and branched seven main distributaries. Since the beginning of its migration, these distributaries were controlled by autogenic avulsions towards ancient depressions in the bottom of the basin. Initially, these avulsions prograded the delta towards SW, afterwards to ENE, and then to NNE, favoring the fragmentation of the ancient lagoonal bay in a set of smaller lakes and lagoons. Faced with this dynamical scenario, shellmounds were erected surrounding the lagoon system, composing important archaeological records of the interaction between sedimentary evolution and prehistoric human occupation. The results of the grain size analysis showed that the deltaic sedimentation, in the vicinity of slopes of hills, was mixed with colluvium and/or gravity flow deposits, that is evidenced by the presence of texturally very immature intervals in some cores. The analysis of heavy minerals, by its turn, showed that the main controlling factor in the variations of its assemblage in deposits of delta and basin is the sedimentary provenance. In terms of mediate sources, this provenance reflects plutonic and metamorphic (medium to high grade) rocks of the Florianópolis batholith (including its xenoliths) and of the Granite-Gneiss Complex, and weathered sedimentary sandstones of the Palaeozoic Paraná basin. Regarding immediate sources, deltaic deposits stand out by its mineralogical affinity with sands of the Tubarão river, mainly by the mutual presence of weathered grains of kyanite and staurolite, whereas deposits of the lagoon have mineralogical similarity with the sands of Braço do Norte and Capivari de Baixo tributary rivers, especially in relation to the presence of zircon. The origin of the organic matter found in the deposits of the delta and in its lagoonal basin is both from sedimentary input of terrestrial sources (provided by rivers) and marine (brought via inlets), fact evidenced by results of \'delta\'\'POT.13 C\', \'delta\'\' POT.15 N\', and \'C IND.ORG\'/\'N IND. TOTAL\' ratio. Particularly, in the sediments of the basin, variations between different types of organic matter have occurred during the Holocene, and are attributed both to the progressive physical isolament of the lagoon system from the open sea, and by local climate change (pronounced augment of precipitation). The isotope analyses of oxygen (\'delta\'\'POT.18 O\') of molluskan shells from the deposits of the basin present relative enrichment in \'ANTPOT.16 O\' during the Holocene. This result, as well as the one from isotope analyses of carbon and nitrogen of sediments, suggests gradual isolation of the lagoonal waters of influence of waters from the open sea.

A utilização de traçadores como os isótopos estáveis de carbono e nitrogênio, é crescente e complementa as técnicas convencionais nos estudos referentes à dieta em animais silvestres. Isso é possível pois o valor isotópico dos itens utilizados na alimentação é refletido nos tecidos. A diferença isotópica resultante chamada de fator de discriminação ou fracionamento, está associada aos processos metabólicos necessários para que ocorra a incorporação de nutrientes. O estudo teve como objetivo medir o tempo de incorporação dos isótopos no plasma e nas células sanguíneas, componentes de \"tecido\" não mortal reamostrável, e determinar o fator de discriminação em cinco espécies de quelônios de água doce: Podocnemis expansa (tartaruga-da-Amazônia), Podocnemis unifilis (tracajá), Phrynops geofroanus (cágado-de-barbicha), Trachemys scripta (tartaruga-de-orelha-vermelha) e Trachemys dorbigni (tigre-d\'água). Os animais foram mantidos em cativeiro e as diferenças isotópicas dos 10 indivíduos adultos de cada espécie, foram medidas a partir da troca de dietas com valores isotópicos distintos. Com a mudança da dieta, o turnover do carbono e nitrogênio foram estimados entre 7 e 185 dias por meio de regressão exponencial não linear, quando os novos fatores de fracionamento foram estimados. O tempo de turnover para as espécies de quelônios variou de 72 a 337 dias para o carbono, e de 29 a 270 dias para o nitrogênio no plasma. Nas células sanguíneas o turnover variou de 3 a 373 dias para o carbono, e de 51 a 216 dias para o nitrogênio. Os fatores de discriminação que eram em média próximos a zero para o carbono, e entre 3-4‰ para o nitrogênio, variaram de 1,01 a 3,28‰ para o 13C e -0,76 a 0,49‰ para o 15N no plasma, e de 1,49 a 3,98‰ para o 13C e 0,99‰ a 4,69 para o 15N nas células sanguíneas, com a diminuição de 3,7‰ e aumento de 6,2‰, respectivamente para carbono e nitrogênio, na nova dieta. A diferença encontrada entre os fatores de discriminação calculados anteriormente a troca da dieta e após a troca, mostraram que provavelmente a incorporação dos isótopos estáveis se dá de forma heterogênea nos tecidos. De acordo com a literatura foi possível analisar que fatores como a memória isotópica, as rotas metabólicas e elementos característicos dos répteis possivelmente estão ligados ao turnover mais lento, diferente dos animais endotérmicos em que esse processo é mais rápido. / The use of tracers such as stable carbon and nitrogen isotopes is crescent and complements the conventional techniques used in the studies referring to the diet in wild animals. This is possible because the isotopic value of the items used in the diet reflects their isotopic values on the tissues. The resulting isotopic difference called the discrimination factor or fractionation is associated with the metabolic processes required for nutrient incorporation to occur. The object of the study was to measure the incorporation time of isotopes into plasma and blood cells, components of re-portable non-lethal \"tissue\", and to determine the discriminant factor of five species of freshwater chelonians: Podocnemis expansa (Amazonia tortoise), Podocnemis unifilis (tracajá), Phrynops geofroanus (geoffroy´s side necked turtle), Trachemys scripta (red-eared slider turtle) and Trachemys dorbigni (d\'orbigny\'s slider). The isotopic differences of 10 adult individuals of each species kept in captivity were measured through shifting diets with different isotopic values. With the diet variation, carbon and nitrogen turnover was estimated between 7 and 185 days by non-linear exponential regression, when the new fractionation factors were estimated. The turnover time for the chelonians species varied from 72 to 337 days for carbon, and from 29 to 270 days for the plasma nitrogen. In blood cells, the turnover ranged from 3 to 373 days for carbon, and from 51 to 216 days for nitrogen. Discrimination factors that were, in average, close to zero for carbon and between 3 and 4‰ for nitrogen ranged from 1.01 to 3.28‰ for 13C and -0.76 to 0.49‰ for 15N in plasma, and from 1.49 to 3.98‰ for 13C and 0.99 to 4.69 for 15N in blood cells, with a decrease of 3.7‰ and an increase of 6.2‰, respectively for carbon and nitrogen in the new diet. The difference found between the discrimination factors calculated before and after the diet shift, showed that stable isotopes incorporation probably occurs in a heterogenous way in tissues. According to the literature it was possible to analyze that factors such as isotopic memory, metabolic routes and reptiles characteristic elements are possibly linked to slower turnover, different from endothermic animals in which this process is faster.