Doctor of Philosophy / Department of Grain Science and Industry / Yong Cheng Shi / This study focused on in-vitro digestibility and pasting properties of cross-linked (CL) starch with different amylose contents and different cross-linking levels, as well as physicochemical properties of extruded wheat flours with different amylose contents and functionality of amylopectin and cross-linking in improving the textural and physical properties of oat flour extrudates. Starch was CL by phosphorylation using a mixture of sodium trimetaphosphate and sodium tripolyphosphate at the ratio of 99:1 under alkaline condition. The digestibility of highly CL maize starches with different amylose contents was determined by Englyst, Available Carbohydrate Dietary Fiber and Association of Official Analytical Chemists (AOAC) Method 991.43 methods. CL waxy and normal maize starch granules swelled much more at higher temperatures, resulting in significantly lower total dietary fiber content than high-amylose maize starch. The alkali treatment study on low levels of cross-linking in starch affected the ratios of total bound phosphate esters which changed the degree of starch swelling, crytallinity and pasting properties of the CL starch. The study on the mechanism of the digestive enzymes and the extent of digestion during the incubation of CL wheat starch in AOAC Method 2009.01 showed progressive digestion after 16 h of incubation, which may not reflect in-vivo response in human. Extrusion of normal and waxy wheat flours resulted in the breakdown of starch and an increase in the insoluble protein, which affected the textural and structural properties of extrudate. High energy input played a major role in radial expansion of normal hard wheat extrudate, whereas higher amylopectin in soft waxy wheat flour was a dominant factor in determining the radial expansion when compared to normal soft wheat. Inclusion of soft waxy wheat in the oat flour formulations at 18% moisture content improved the textural and structural properties of extrudates. Low cross-linking level of CL waxy maize starch in oat flour formulation increased the void fraction and reduced the breaking strength of extrudates, whereas higher cross-linking levels of CL starches improved the resistant starch level on oat flour formulation but had very poor structural and textural properties.The study offers a good insight on the properties and digestibility of CL starch, as well as using low levels of CL starch to improve textural properties of nutritional extruded products. In addition, study on the extrusion of wheat flours with different amylose and protein contents provides knowledge on the influence of chemical compositions and energy input on the physico-chemical properties of extrudates.

Doctor of Philosophy / Department of Biological and Agricultural Engineering / Donghai Wang / Sorghum distillers dried grains with solubles (DDGS), canola and camelina meals are the main co-products resulting from grain-based ethanol or oil production. The main objective of this research was to study physicochemical properties of proteins isolated from DDGS, canola and camelina meals and their adhesion performance. Acetic acid-extracted sorghum protein (PI) from DDGS had superior adhesion performance in terms of dry, wet and soak adhesion strength compared to acetic acid-extracted sorghum protein (PF) from sorghum flour and aqueous ethanol-extracted sorghum protein (PII) from DDGS. PI had a significantly higher wet strength (3.15 MPa) than PII (2.17 MPa), PF (2.59 MPa), and soy protein without modification (1.63 MPa). The high content of hydrophobic amino acids in PI (57%) was likely the key factor responsible for high water resistance. Canola protein was extracted from canola meal and modified with different concentrations of NaHSO3 (0 to 15 g/L) during protein isolation. Unmodified canola protein showed the highest wet shear strength of 3.97 MPa cured at 190 °C. Adhesion strength of canola protein fractions extracted at pH 5.5 and pH 3.5 (3.9-4.1 MPa) was higher than the fraction extracted at pH 7.0. NaHSO3 slightly weakened adhesion performance of canola protein; however, it improved handling and flow-ability due to breaking of disulfide bonds in proteins. Albumin, globulin, and glutelins were isolated from camelina meal. Adhesion performance of globulin fraction behaved better than glutelin fraction. The greatest wet shear strength of globulin was 3.3 MPa at curing a temperature of 190 °C. Glutelin had a more protein aggregation compared with globulin, as indicated by higher crystallinity and thermal stability, and dense protein aggregate. This compact structure of glutelins may partially contribute to lower adhesion strength as compared to globulin.

Master of Science / Department of Grain Science and Industry / Subramanyam Bhadriraju / During heat treatment, the ambient temperature of grain-processing facilities is raised to 50-60°C for at least 24 hours to manage stored-product insects. Young larvae (first instars) of the red flour beetle, Tribolium castaneum (Herbst), are the most heat tolerant stage at 50-60°C. A thermal death kinetic (TDK) model predicted survival of T. castaneum young larvae exposed to six constant elevated temperatures between 42 and 60ºC. The model is based on logarithmic survival of T. castaneum as a function of time and logarithmic reduction in larval survival as a function of temperature. The model was validated with 12 independent temperature datasets collected during heat treatments of pilot-scale and commercial grain-processing facilities. Young larval survival in plastic boxes/vials with flour was used to validate model predictions. The heating rate to 50°C from the ambient among the 12 datasets ranged from 0.9-7.8°C/h. Mean absolute deviations between observed and predicted larval survival for 10 of the 12 datasets ranged from 2.1-11.4%; it was 16.2 and 18.3% for two other datasets. The TDK model can be used to predict survival of young larvae of T. castaneum based on time-dependent temperature profile obtained at any given location during heat treatment of grain-processing facilities. In three commercial grain-processing facilities heat treatments were conducted for 24-27.7 hours using forced-air gas heaters. Temperatures attained and survival of 20 eggs, 20 young larvae, and 20 adults of T. castaneum in bioassay vials at various locations were determined. Across all three facilities, 5 out of 2720 adults in 136 vials, 1 out of 960 young larvae in 48 vials, and 0 out of 1760 eggs in 88 vials were alive at the end of the heat treatment. In each facility, the time in hours for 1% predicted survival of T. castaneum young larvae was positively related to how quickly temperatures reached 50°C, and negatively related to rate of heating to 50°C from the ambient, time above 50°C in hours, and the maximum temperature. Bioassays with T. castaneum life stages and the TDK model can be used to gauge effectiveness of facility heat treatments.

Master of Science / Department of Grain Science and Industry / Bhadriraju Subramanyam / A synthetic zeolite (Odor-Z-Way, sodium aluminum silicate) used for odor adsorption was tested for its ability to control adults of stored-grain insects on wheat and on concrete petri dishes used to simulate floors of empty bins. Insect species tested included unsexed adults of the lesser grain borer, Rhyzopertha dominica (F.); rice weevil, Sitophilus oryzae (L.); maize weevil, Sitophilus zeamais (Motschuslky); red flour beetle, Tribolium castaneum (Herbst), and sawtoothed grain beetle, Oryzaephilus surinamensis (L.). Two formulations were evaluated under laboratory conditions (28±1⁰C and 65±1% r.h.): coarse zeolite (with 90% of particles having a mean diameter at or below 155 µm) and fine zeolite (with 90% of particles having a mean diameter at or below 47.0 µm). On concrete, arenas in 9-cm diameter Petri dishes were sprinkled with the synthetic zeolite to provide deposits of 0 (control), 5 and 10 g/m[superscript]2. Mortality was assessed at times ranging from 10 minutes to 24 hours followed by 48 hours recovery on wheat. Mortality in adults of the five species increased as the rate of application and the duration of exposure increased. Concrete Petri dishes sprinkled with the fine zeolite yielded percent mortality greater or equal to that observed with the coarse zeolite- sprinkled Petri dishes. Bioassays on wheat were conducted using two dosage rates: 0.1 to 3.0 g/kg for R. dominica and 0.05 to 1.0 g/kg for the other insect species. Mortality was assessed 7 days post- infestation. A concentration of 0.75 g/kg of fine or coarse zeolite achieved 100% mortality in adults of S. zeamais, T. castaneum, and O. surinamensis. All adults of S. oryzae were killed using 0.50 g/kg of coarse or fine zeolite. Adults of R. dominica were the least susceptible: 2.50 g/kg of fine zeolite and 3.0 g/kg of coarse zeolite were required for 100% mortality. Mortality generally increased with the concentration of zeolite applied on wheat. Efficacy was not related to particle size. This is the first study showing the efficacy of a synthetic zeolite against adults of five species of stored-product insects on concrete and wheat. Synthetic zeolites can be a suitable alternative to currently used pesticides for treatment of empty bin floors and stored wheat for insect control.

Doctor of Philosophy / Department of Grain Science and Industry / Praveen V. Vadlani / Lactic acid is an important platform chemical that has long history and wide applications in food, polymer, pharmaceutics and cosmetic industries. Lactic acid has two optical isomers; namely D-lactic acid and L-lactic acid. Racemic mixture of lactic acid are usually used as preservatives and ingredients in solvents, or as precursors for different chemicals. Currently there is an increasing demand of optical pure lactic acid as a feedstock for the production of poly-lactic acid (PLA). PLA is a biodegradable, biocompatible and environmental friendly alternative to plastics derived from petroleum based chemicals. Optically pure D or L-lactic acid is used for the synthesis of poly D or L- lactic acid (PDLA, PLLA). Blend of PDLA with PLLA results in a heat-resistant stereocomplex PLA with excellent properties. As a consequence, large quantity of cost effective D-lactic acid is required to meet the demand of stereocomplex PLA. Lignocellulosic biomass is a promising feedstock for lactic acid production because of its availability, sustainability and cost effectiveness compared to refined sugars and cereal grain-based sugars. Commercial use of lignocellulosic biomass for economic production of lactic acid requires microorganisms that are capable of using all sugars derived from lignocellulosic biomass. Therefore, the objectives of this study were: 1) to produce high level of optically pure D-lactic acid from lignocellulosic biomass-derived sugars using a homofermentative strain L. delbrueckii via simultaneous saccharification and fermentation (SSF); 2) to develop a co-culture fermentation system to produce lactic acid from both pentose and hexose sugars derived from lignocellulosic biomass; 3) to produce D-lactic acid by genetically engineered L. plantarum NCIMB 8826 ∆ldhL1 and its derivatives; 4) to construct recombinant L. plantarum by introduction of a plasmid (pLEM415-xylAB) used for xylose assimilation and evaluate its ability to produce D-lactic acid from biomass sugars; and 5) to perform metabolic flux analysis of carbon flow in Lactobacillus strains used in our study. Our results showed that D-lactic acid yield from alkali-treated corn stover by L. delbrueckii and L. plantarum NCIMB 8826 ∆ldhL1 via SSF were 0.50 g g[superscript]-1 and 0.53 g g[superscript]-1 respectively; however, these two D-lactic acid producing strains cannot use xylose from hemicellulose. Complete sugar utilization was achieved by co-cultivation of L. plantarum ATCC 21028 and L. brevis ATCC 367, and lactic acid yield increased to 0.78 g g[superscript]-1 from alkali-treated corn stover, but this co-cultivation system produced racemic mixture of D and L lactic acid. Simultaneous utilization of hexose and pentose sugars derived from biomass was achieved by introduction of two plasmids pCU-PxylAB and pLEM415-xylAB carrying xylose assimilation genes into L. plantarum NCIMB 8826 ∆ldhL1, respectively; the resulting recombinant strains ∆ldhL1-pCU-PxylAB and ∆ldhL1-pLEM415-xylAB used xylose and glucose simultaneously and produced high yield of optically pure D-lactic acid. Metabolic flux analysis verified the pathways used in these Lactobacillus strains and provided critical information to judiciously select the desired Lactobacillus strain to produce lactic acid catering to the composition of raw material and the optical purity requirement. This innovative study demonstrated strategies for low-cost biotechnological production of tailor-made lactic acid from specific lignocellulosic biomass, and thereby provides a foundational manufacturing route for a flexible and sustainable biorefinery to cater to the fuel and chemical industry.

Master of Science / Agricultural Economics / John A. Fox / Hard Red Winter Wheat is an extremely important part of the Kansas agricultural industry. In Kansas, this type of wheat is planted in the fall and harvested in mid-June. After harvest, producers have the option to either store or sell their wheat. If they decide to store, the wheat can be stored on-farm or in a commercial facility. Another storage decision is whether to store the wheat hedged or unhedged (speculative) storage. Hedging is a technique to limit the price risk associated with selling or buying commodities. This study compared hedged and speculative decisions for both on-farm and commercial storage scenarios for 108 locations geographically dispersed across Kansas. Wednesday prices were gathered for each location during the 10-year time period from 2004 to 2013. All monthly storage period possibilities from July to May were examined to determine the storage returns potential. All results are displayed as the profit or loss achieved compared to selling in June at harvest. Averages for Kansas were negative or slightly positive for all storage scenarios, but hedged returns showed much less variability in results compared to speculative returns. Regional differences showed that North Central Kansas displayed the highest level of basis improvement over the 10-year period followed by South Central Kansas. A regression analysis using nearby basis in June, harvest price, and futures contract spreads as independent variables and storage returns as a dependent variable showed emphasis on the futures spread having the biggest influence on storage profits.

Master of Science / Agronomy / Mithila Jugulam / Common waterhemp (Amaranthus rudis) is a problematic weed species of cropping systems throughout the Midwestern states, including Kansas. Recently, waterhemp populations from Kansas were found to have evolved resistance to the widely used herbicide glyphosate as a result of amplification of the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), the enzyme target of glyphosate. The objectives of this research were to 1) perform glyphosate dose-response study and determine the relationship between relative EPSPS genomic copies and EPSPS gene expression in glyphosate-resistant waterhemp, and 2) characterize the genomic configuration and distribution of EPSPS copies using florescence in situ hybridization (FISH) in three glyphosate-resistant waterhemp populations. Waterhemp populations from eastern Kansas were screened with 868 g ae haˉ¹ (field used rate) of glyphosate, and genomic DNA and total RNA was isolated from the survivors to determine the EPSPS genomic copies and EPSPS gene expression relative to the acetolactate synthase (ALS) gene using qPCR. Furthermore, waterhemp specific EPSPS probes were synthesized to perform florescence in situ hybridization (FISH) on these glyphosate-resistant plants. Results of these experiments indicate a positive correlation between level of glyphosate resistance, EPSPS copies, and their expression. As expected, a negative correlation was found between shikimate accumulation and EPSPS copies. Sequencing of the EPSPS gene showed no presence of the proline 106 mutation, which is known to be associated with glyphosate resistance suggesting that an insensitive EPSPS enzyme was not involved in the mechanism of glyphosate resistance. FISH analysis of resistant plants illustrated presence of amplified EPSPS copies on two homologous chromosomes, likely near the centromeric region. . This is the first report demonstrating a positive relationship between EPSPS copies and expressions, as well as chromosome configuration of EPSPS copies in glyphosate- resistant waterhemp from Kansas.

Master of Science / Department of Animal Sciences and Industry / Jeffrey S. Stevenson / Lactating dairy cows from 2 Kansas farms were used to determine the effectiveness of exogenous progesterone in the form of an intravaginal insert (controlled internal drug release; CIDR) in conjunction with an ovulation-synchronization protocol. Cows were enrolled in a Presynch + Ovsynch protocol after parturition, where they received 2 injections of PGF[subscript]2[alpha], 14 d apart (Presynch) beginning between 30 and 36 DIM. Cows (n = 155) detected in estrus after the second PGF[subscript]2[alpha] injection of Presynch were inseminated (early AI). Remaining cows were assigned randomly to be treated with the Cosynch-72 protocol (GnRH 12 d after last Presynch PGF[subscript]2[alpha] injection, PGF[subscript]2[alpha] 7 d after GnRH, and timed AI + GnRH injection 72 h later) and served as controls (n = 159), or to be treated with the Cosynch-72 protocol and receive a progesterone insert (Ovsynch + CIDR; n = 175) for 7 d between GnRH and PGF[subscript]2[alpha]. Blood was collected at d −22 and −10 (relative to TAI at d 0) to determine cycling status based on progesterone concentrations and again at d 11 post AI to determine luteal competency. Treated cows were assigned body condition scores (BCS) on d −22 and −10. Pregnancy status was confirmed by palpation of the uterus per rectum and its contents on d 38 post-timed AI and verified again 4 wk later. Treatment with the progesterone insert increased timed AI pregnancies per AI in Cosynch- 72 + CIDR-treated cows when compared with controls (38 vs. 24%), but did not differ from early AI cows (38%). Pregnancy loss was numerically less in progesterone-treated cows than in controls (4.4 vs. 11.8%). Our study shows that increased pregnancies per AI can be achieved by the use of a progesterone insert in a reduced population of cows not yet inseminated, but treated with a progesterone insert.

Master of Science / Department of Agricultural Economics / Ted C. Schroeder / Hedonic pricing models have long been used to evaluate prices in high-end segments of the equine industry. However, the lower end markets, including most of the recreational and pleasure horses, have yet to be studied in the economic literature. This study evaluates characteristics affecting the price of recreational horses advertised online, and provides a framework for future market studies on various segments of the equine industry. Data were collected in both the spring and fall of 2008, in addition to a survey being conducted in the fall to collect more accurate pricing information. Three different functional forms were used and their outcomes discussed to determine which one best fit the data. Results show that the semi-log functional form appeared to best fit the data. Characteristics that consistently showed statistical significance included the horse being advertised using a photo ad, the age of the horse, and whether or not the horse was registered. Gender variables and the state which the horse was sold from showed statistical significance in most of the models; although the variables denoting breed were statistically significant as a group, no model consistently found statistical significance in any of the variables individually. Color characteristics did not demonstrate statistical significance consistently in any model. Finally, suggestions for future research are discussed. Data issues could be avoided with larger or more specific data sets; various data sources could be examined or created such as live equine auctions; regions could be examined by show or rodeo circuit instead of by state. There are political issues in the industry that need to be addressed, but a lack of available data needs to be examined and corrected before many issues can be thoroughly examined. The equine industry is often overlooked in economic literature and is a multi-billion dollar agricultural industry which deals with legislative and taxation issues just like the rest of the agricultural world and is deserving of attention.

Master of Science / Department of Agricultural Economics / Ted C. Schroeder / Very rapid growth in the ethanol industry has led to a void of information regarding price dynamics and utilization of distiller's grains. Understanding market conditions is essential for livestock producers to make informed decisions in the procurement of feedstuffs, especially as grain price levels have recently increased substantially. In this study, distiller's grain price discovery dynamics are evaluated to develop an understanding of spatial price relationships. The knowledge of price relationships reveals that users of distiller's grain should shop around when procuring the feedstuff. Additionally, because animal performance may be altered with increased inclusion of distiller's grains, regional competitive advantages could shift fed cattle production to geographic regions characterized by high of ethanol production plants. Therefore, the cost of current grain processing methods are evaluated to enhance the awareness of regional competitiveness and long term sustainability. The combination of these two objectives allows producers to better realize the implications of the ethanol industry on their ability to maintain their operations into the near future.