La capacité de mesurer les rapports isotopiques par spectroscopie RMN du 13C (irm-13C NMR) donne un accès direct à la distribution d’isotopes possédant une position spécifique au sein de molécules. Dans cette thèse, cette approche a été développée dans le but d’élucider le fractionnement isotopique au cours de la biosynthèse dans des plantes de différents alcaloïdes (nicotine, tropine, tramadol) qui ont certaines caractéristiques communes lors de leurs biosynthèses. L’une des caractéristiques clés de ces composés est la présence de groupes O-méthyle et/ou N-méthyle. En général, le rapport 13C/12C dans les groupes O-méthyle et N-méthyle de produits naturels est exceptionnellement faible comparé aux autres carbones dans la molécule, ces travaux ont été axés sur l’explication de ce phénomène. La grande majorité de ces groupes méthyles dans les produits naturels proviennent du transfert d’un groupe Sméthyle de L-méthionine (L-Met) via la Sadénosylméthionine (AdoMet). Il a été prouvé par irm-13C NMR que, dans la molécule donneuse, L-Met, le groupe Sméthyle est appauvrit. La cause de ce phénomène a été explorée par le biais de l’étude de petit modèle théorique pour la cobalamin-independent méthionine synthase, l’enzyme responsable du transfert du groupement méthyle durant la biosynthèse de L-met. Ces calculs ont montré une barrière d’énergie élevée pour le transfert du groupe méthyle et un fort effet isotopique cinétique du 13C y associé. De plus, une méthodologie générique de l’étude du ratio 13C/12C dans les aminoacides a été développée, ce qui permet une meilleure compréhension du fractionnement isotopique intervenant durant la biosynthèse d’acides aminés. Une caractéristique supplémentaire de ces travaux est que les données permettent : (i) une comparaison entre les produits naturels et commerciaux, permettant de distinguer ces deux sources, et (ii) une interprétation du modèle isotopique en terme d’origine biosynthétique de composés naturels. Pour le tramadol, il a été possible de proposer un chemin hypothétique pour ce produit naturel récemment découvert. / The ability to carry out isotope ratio monitoring by 13C NMR spectrometry (irm-13C NMR) gives direct access to position-specific isotope distributions in whole molecules. In this thesis this approach has been developed with the aim of elucidating isotopic fractionation during the biosynthetic pathways in plants of a number of alkaloids (nicotine, tropine and tramadol) that have certain features of their biosynthesis in common. One key common feature of these compounds is the presence of O-methyl and/or N–methyl groups. As it is generally found that the 13C/12C ratio in the O-methyl and N-methyl groups of natural products is exceptionally low relative to the other carbon positions in the molecule, the work focused on explaining this phenomenon. The vast majority of these methyl groups in natural products are derived by the transfer of the S-methyl group from L-methionine (L-Met) via S-adenosyl methionine (AdoMet). It is shown by irm-13C NMR that in the donor molecule, L-met, the S-methyl group is impoverished. The cause of this was investigated by the study of a small theoretical model for the cobalaminindependent methionine synthase, the enzyme responsible for methyl group transfer in L-met biosynthesis. These calculations showed a high energy barrier for methyl group transfer and an associated large 13C kinetic isotope effect. In addition, a generic methodology to study the 13C/12C ratios in amino acids has been developed, which allows insight into the isotopic fractionation occurring during amino acid biosynthesis. A further feature of the work is that the data allow: (i) a comparison of natural and commercial products, which enables distinguishing between sources, and (ii) an interpretation of the isotopic pattern in terms of the biosynthetic origin of natural compounds. For tramadol, this made it possible to propose a hypothetical pathway for this newly-discovered natural product.

This thesis deals with black carbon, its characteristic features and with its occurrence in chernozemic soils. In particular, this thesis deals with methods, which can study presence of black carbon in soils. The presence of black carbon and the whole composition of soil organic matter of three chernozemic soils in Czechia (Zeměchy, Tursko, Syrovice) is examined by 13 C NMR spectroscopy. Anthracological analysis of charcoal from fossil chernozems of Zemechy loess ravine deals with pedogenesis of chernozems and development of Quaternary vegetation in Central Europe. Coniferous tree species of Pinus sp., Pinus cf. cembra, Larix/Picea, Juniperus a Vaccicium, i.e. cold- and drought-tolerant taxa, were identified by anthracological analysis of soils of Zemechy loess ravine. The identified species suggest that the landscape around Zemechy was probably formed by parkland taiga. According to 13 C NMR spectroscopy, soil organic matter of fossil chernozem of Zemechy loess ravine consists particularly of alkyl and O-alkyl carbon. Aromatic carbon is also significant. O-alkyl carbon is the most important in the recent chernozems of Tursko and Syrovice. Aromatic carbon has the smallest proportion in both chernozems. The presence of aromatic carbon in chernozem of Tursko is the smallest of all analyzed soils. The...

Title: The Study of Dynamic Behaviour and Interactions During the Tempera- ture-Induced Phase Separation in Polymer Solutions Author: Hana Kouřilová Department / Institute: Charles University in Prague, Faculty of Mathemat- ics and Physics, Department of Macromolecular Physics Supervisor of the doctoral thesis: doc. RNDr. Lenka Hanyková, Dr. Abstract: 1 H and 13 C high-resolution NMR spectroscopies were used for the phase separation investigation in three types of polymer solutions: i) poly(N -isopropylmethacrylamide)/D2O/ethanol with or without negatively charged comonomer sodium methacrylate, ii) random copolymers poly(N -isopro- pylmethacrylamide-co-acrylamide) in D2O, D2O/ethanol and D2O/acetone and iii) D2O solutions of polymer mixtures poly(N -isopropylmethacrylamide)/poly(N - vinylcaprolactam). For i) cononsolvency effect and influence of temperature on the phase separation was studied. Differences between mesoglobules formed as a consequence of cononsolvency effect and of temperature were found. While inside the cononsolvency-induced mesoglobules no bound ethanol molecules were detect- ed, in the mesoglobules formed by the effect of temperature ethanol molecules were present. The charge introduced into the polymer chains strenghtens polymer- solvent interactions. For ii) mesoglobules were found to be...

Les écosystèmes méditerranéens littoraux sont soumis à divers stress environnementaux naturels (stress hydrique et halin) et anthropiques susceptibles de s'intensifier dans les prochaines décennies. Dans ce contexte, le fonctionnement des communautés microbiennes - encore très peu étudiés dans de tels milieux - était important à préciser. L'effet du stress halin sur la transformation de la matière organique dans la litière de pin d'Alep issues des calanques de Marseille a été estimé ainsi que le potentiel de biodégradation d'un polluant chronique, l'anthracène, un Hydrocarbures Aromatiques Polycycliques. Différents approches in situ, ex situ et in vitro ont été utilisées en associant différentes méthodes afin de mesurer l'état fonctionnel du milieu (activités enzymatiques, respirométrie basale), la diversité fonctionnelle microbienne (Catabolic Level Physiological Profile), la biomasse microbienne et l'évolution chimique de la matière organique (RMN du solide du 13C). En mésocosmes, les laccases, induites par la présence d'anthracène, ont contribué à son oxydation et ont été séquencées par LC/MS/MS afin de déterminer les espèces fongiques à l'origine de leur synthèse. Les résultats montrent que certaines activités enzymatiques du cycle du carbone sont peu affectées par la salinité et l'apport d'anthracène. Toutefois la diversité fonctionnelle des communautés autochtones de litière de pin d'Alep issues de ces environnements est modifiée à une échelle micro-locale par l'effet marin. Par ailleurs les réponses fonctionnelles face à l'apport d'anthracène des communautés microbiennes de litières de pin d'Alep en zone continentale sont différentes de celles des zones littorales / Mediterranean coastal ecosystems are subjected to various natural and anthropogenic environmental pressures which are supposed to be enhanced because of climatic changes. Little is known about microbial community functioning in such ecosystems. Our site of study is located in the Calanques of Marseille, a hot spot of biodiversity. The effect of salinity (via sea spray exposure) on microbial communities and their ability to transform organic matter in an Aleppo pine litter have been studied as well as the potential of autochthonous microorganisms to transform anthracene used as a polycyclic aromatic hydrocarbon model. To do so, different approaches (in situ, ex situ and in vitro experimental design) were used and we combined various methods such as enzyme activities (laccase, cellulase, phosphatase, lipase), CLPP (Biolog ECO and FF plates), respirometry (basal and induced) and litter chemical characterization (solid-state 13C NMR). Laccases were induced by anthracene in mesocosms and oxidized this compound (with anthraquinone as an intermediate). These enzymes were sequenced by LC/MS/MS to determine the fungal strains responsible for their production. We also found that enzyme activities were not strongly influenced by salinity or anthracene inputs. On the other hand, functional diversity was structured at a small-spatial scale. Moreover, functional responses of microbial communities from inland areas strongly differ from those of coastal areas regarding anthracene inputs since no laccase induction was observed in inland litter.

Two approaches for creating a new all-cellulose composite material have been studied: the biosynthesis of compartmentalised bacterial cellulose fibril aggregates and the compression moulding of commercial chemical wood pulps processed with only water. The objective was to study the structural changes during processing and the complexity of relating the mechanical properties of the final biocomposites to the nanoscale structure was highlighted. Solid-state CP/MAS 13C NMR spectroscopy was utilised to determine both the fibril aggregate width and the content of the different crystalline cellulose forms, cellulose I and cellulose II. Using this method, the quantities of hemicellulose present inside the fibre wall and localised at the fibre surfaces could be determined. The formation of cellulose fibrils was affected by the addition of hydroxyethylcellulose (HEC) to a culture medium of Acetobacter aceti, and the fibrils were coated with a thin layer of HEC, which resulted in loose bundles of fibril aggregates. The HEC coating, improved the fibril dispersion in the films and prevented fractures, resulting in a biocomposite with remarkable mechanical properties including improved strength (289 MPa), modulus (12.5 GPa) and toughness (6%). The effect of press temperature was studied during compression moulding of sulphite dissolving-grade pulps at 45 MPa. A higher press temperature yielded increases in the fibril aggregation, water resistance (measured as the water retention value) and Young’s modulus (12 GPa) in the final biocomposite. The high pressure was important for fibril aggregation, possibly including cellulose-cellulose fusion bonds, i.e., fibril aggregation in the fibre-fibre bond region. The optimal press temperature was found to be 170°C because cellulose undergoes thermal degradation at higher temperatures. The effect of hemicellulose was studied by comparing a softwood kraft paper-grade pulp with a softwood sulphite paper and a softwood sulphite dissolving-grade pulp. A significant fibril aggregation of the sulphite pulps suggested that the content and distribution of hemicellulose affected the fibril aggregation. In addition, the hemicellulose structure could influence the ability of the hemicellulose to co-aggregate with cellulose fibrils. Both sulphite pulp biocomposites exhibited Young’s moduli of approximately 12 GPa, whereas that of the kraft pulp was approximately half that value at 6 GPa. This result can be explained by a higher sensitivity to beating in the sulphite pulps. The effect of mercerisation, which introduces disordered cellulose, on the softwood sulphite dissolving-grade pulp was also studied under compression moulding at 170°C and 45 MPa. The mechanisms causing an incomplete transformation of cellulose I to II in a 12 wt% NaOH solution were discussed. The lower modulus of cellulose II and/or the higher quantity of disordered cellulose likely account for the decrease in Young’s modulus in the mercerised biocomposites (6.0 versus 3.9 GPa). / Två metoder för att skapa ett nytt kompositmaterial baserat på enbart cellulosa har studerats, biosyntes av fibrillaggregat bestående av bakteriecellulosa och varmpressning av kommersiella träfiberbaserade massor med vatten som den enda processkemikalien. Målet var att studera de strukturella förändringarna som sker under tillverkningsprocessen. Även komplexiteten i att relatera strukturen på nanonivå till de mekaniska egenskaperna hos de slutliga biokompositerna belystes. Med fastfas CP/MAS 13C NMR-spektroskopi var det möjligt att bestämma både fibrillaggregattjockleken och mängden av cellulosakristallformerna; cellulosa I och cellulosa II. Det var också möjligt att bestämma mängden hemicellulosa dels närvarande inuti fiberväggen och dels mängden lokaliserad på fiberytor. Tillsats av hydroxyetylcellulosa (HEC) i odlingsmediet för Acetobacter aceti påverkade bildandet av cellulosafibriller som blev belagda med ett tunt skikt av HEC, vilket också resulterade i löst bundna fibrillaggregat. HEC-beläggningen förbättrade fibrilldispersionen i filmerna och minskade sprickbildningen, vilket gav en biokomposit med mycket goda mekaniska egenskaper med kombinerad hög styrka (289 MPa), styvhet (12.5 GPa) och seghet (6%). Effekten av presstemperatur vid varmpressning (45 MPa tryck) studerades på sulfit dissolvingmassor. Högre presstemperatur gav ökad fibrillaggregering, ökat vattenmotstånd (mätt som vattenretentionsvärde) och högre styvhet (12 GPa) för biokompositen. Det höga trycket var också viktigt för fibrillaggregeringen, som troligen omfattar cellulosa-cellulosa samkristallisation dvs. fibrillaggregering i fiber-fiber-bindningsregionen. Den optimala presstemperaturen föreslogs vara 170° C pga. termisk nedbrytning av cellulosa vid högre temperaturer. Effekten av hemicellulosa studerades genom att jämföra sulfat pappersmassa med sulfit pappersmassa och sulfit dissolvingmassa. Mängden och fördelningen av hemicellulosa föreslogs ligga till grund för skillnaden i fibrillaggregering, som var mera uttalad i sulfitmassorna. Även hemicellulosans struktur kan påverka förmågan hos hemicellulosa att sam-aggregera med cellulosafibriller. Biokompositerna baserade på sulfitmassorna hade en styvhet på ca. 12 GPa, medan sulfatmassan bara hade hälften av den nivån ca. 6 GPa, vilket förklarades av sulfitmassornas högre känslighet för malning. Även effekten av mercerisering av sulfit dissolvingmassa varmpressad vid 170° C och 45 MPa studerades. Mercerisering introducerar oordnad cellulosa och mekanismerna som endast ger en partiell omvandling av cellulosa I till II i en 12 vikt% NaOH-lösning diskuterades. Den sämre styvheten hos den merceriserade biokompositen (6.0 resp. 3.9 GPa) förklaras troligen genom cellulosa II kristallens lägre styvhet och/eller den högre mängden av oordnad cellulosa. / <p>QC 20121106</p> / Wallenberg Wood Science Center / Biomime

Reindeer have been shown to alter boreal ecosystems by changing the vegetation cover and influencing belowground processes. By providing nutrients for plants and by exerting trampling stress on the field layer vegetation, reindeer induce shifts in the vegetation where ground-lichen are being replaced by evergreen shrubs. Nutrients also stimulate microbial activity in the soil which has been shown to increase decomposition rates, thus potentially reducing the carbon (C) stock in boreal soils. Microbial activity is potentially further increased by higher soil temperatures caused by a removal of the lichen layer which could further increase C losses from the soil. However, findings of the effects of reindeer on the C stock diverge and potential implications of changes in C quality have rarely been considered. Here I show that reindeer reduce the C stock in lichen-dominated boreal forests in northern Fennoscandia and shift the C quality towards higher recalcitrance and reduce concentrations of labile C. I found that a reduction of tree and lichen biomass by reindeer reduces soil organic carbon (SOC) pools directly through lower litter inputs. Further, the reduction of lichen biomass and increase in evergreen shrubs directly reduces the quality of SOC. My results suggest that reindeer-induced vegetation changes have a direct control over SOC quantity and quality in the study sites and that microbial adaptations to resource availability may only play a minor role in shaping SOC, since year-round low soil temperatures strongly inhibit microbial decomposition. / <p>Parts of the methods section has been written in the active form (e.g., I did ...) to highlight which analyzes I conducted myself since some of the data that I used was not collected by me.</p>

For the first time, a novel processing method of co-refining wood and polyolefin (PO) by steam-explosion was scientifically explored for wood-thermoplastic composites without a coupling agent. Traditional studies have addressed the improvement of adhesion between components of wood thermoplastic composites through the use of coupling agents such as maleated PO. The objective of this study was to increase adhesion between wood and PO through reactive processing conditions of steam-explosion. PO characteristics, such as type (polyethylene or polypropylene), form (pellet, fiber, or powder) and melt viscosity were studied along with oxygen gas content of the steam-explosion reactor vessel. Modification of co-processed wood fiber was characterized in four studies: microscopy analysis of dispersion of PO with wood fiber, sorption properties of co-processed material, chemical analysis of fractionated components, and morphological investigation of co-processed material. Two additional studies are listed in the appendices that relate to adsorption of amphiphilic polymers to the cellulose fiber surface, which is one hypothesis of fiber surface modification by co-steam-explosion. Microscopy studies revealed that PO melt viscosity was found to influence the degree of dispersion and uniformity of the steam-exploded material. The hygroscopic nature of the co-processed fiber declined as shown by sorption isotherm data. Furthermore, a water vapor kinetics study found that all co-refined material had increased initial diffusion coefficients compared to the control fiber. Chemical changes in fractionated components were PO-type dependent. Lignin extracted from co-processed wood and polyethylene showed PO enrichment determined from an increase of methylene stretching in the Fourier Transform infrared subtraction spectra, while lignin from co-processed wood and polypropylene did not. Additionally, extracted PO showed indirect signs of oxidation as reflected by fluorescence studies. Solid state nuclear magnetic resonance spectroscopy revealed a number of differences in the co-processed materials such as increased cellulose crystallinity, new covalent linkages and an alternative distribution of components on the nanoscale reflected in the T1Ï relaxation parameter. Steam-explosion was shown to modify wood fiber through the addition of "non-reactive" polyolefins without the need for coupling agents. In light of these findings, co-refining by steam-explosion should be viewed as a new reactive processing method for wood thermoplastic composites. / Ph. D.

Water-based resol phenol formaldehyde, PF, and organic polymeric methylenebis(phenylisocyanate), pMDI, are the two primary choices for the manufacture of exterior grade wood-based composites. This work addresses simple physical blends of pMDI dispersed in PF as a possible hybrid wood adhesive. Part one of this study examined the morphology of hybrid blends prepared using commercially available PF and pMDI. It was found that the blend components rapidly reacted such that the dispersed pMDI droplets became encased in a polymeric membrane. The phase separation created during liquid/liquid blending appeared to have been preserved in the cured, solid-state. However, substantial interdiffusion and copolymerization between blend components also appeared to have occurred according to measured cure rates, dynamic mechanical analysis, and atomic force microscopy. In the second part of this study a series of PF resins was synthesized employing the so-called "split-cook" method, and by using a range of formaldehyde/phenol and NaOH/phenol mole ratios. These neat PF resins were subjected to the following analyses: 1) steady-state flow viscometry, 2) free formaldehyde titration, 3) non-volatile solids determination, 4) size exclusion chromatography, 5) quantitative solution-state ¹³C nuclear magnetic resonance, NMR, 6) differential scanning calorimetry, 7) parallel-plate oscillatory cure rheology, and 8) dielectric spectroscopy. The neat PF analytical results were unremarkable with one exception; NMR revealed that the formaldehyde/phenol mole ratio in one resin substantially differed from the target mole ratio. The neat PF resins were subsequently used to prepare of series of PF/pMDI blends in a ratio of 75 parts PF solids to 25 parts pMDI solids. The resulting PF/pMDI blends were subjected to the following analyses: 1) differential scanning calorimetry, 2) parallel-plate oscillatory cure rheology, and 3) dielectric spectroscopy. Similar to what was inferred in part one of this study, both differential scanning calorimetry (DSC) and oscillation cure rheology demonstrated that cure of the PF continuous phase was substantially altered and accelerated by pMDI. However within actual wood bondlines, dielectric analysis detected little variation in cure speed between any of the formulations, both hybrid and neat PF. Furthermore, the modulated DSC curing experiments detected some latent reactivity in the hybrid system, both during initial isothermal curing and subsequent thermal scanning. The latent reactivity may suggest that a significant diffusion barrier existed between blend components, preventing complete reaction of hybrid blends even after thermal scanning up to 200 °C. Part three of this work examined the bonded wood mode-I fracture performance of hybrid resins as a function of the resol formaldehyde/phenol ratio and also the alkali content. A moderate increase in unweathered fracture toughness was observed for hybrid formulations relative to neat PF. Following accelerated weathering, the durability of the hybrid blends was promising: weathered hybrid toughness was equivalent to that of weathered neat PF. While the resol F/P ratio and alkali content both influenced hybrid fracture toughness, statistical modeling revealed interaction between these variables that complicated result interpretation: the influence of hybrid alkali content depended heavily on each formulation's specific F/P ratio, and vice versa. / Master of Science

O presente trabalho mostra a utilização de métodos computacionais e os resultados obtidos na determinação estrutural de produtos naturais, neste caso sesquiterpenos lactonizados. Nosso grupo de pesquisa tem desenvolvido nos últimos anos o projeto denominado SISTEMAT para a determinação estrutural de produtos naturais. Este sistema é composto de programas utilizados para a construção de bancos de dados capazes de armazenar qualquer tipo de informação referente a substâncias orgânicas, e programas que permitem a recuperação e análise das informações contidas nos bancos de dados (programas aplicativos). Foi também construído um programa para a previsão de espectros de RMN 13C utilizando modelos tridimensionais para a representação das moléculas. O programa considera cada carbono e sua vizinhança química em três dimensões como uma subestrutura. Para encontrar o deslocamento químico equivalente a uma nova subestrutura, ele procura no banco de dados um carbono com uma vizinhança equivalente. O banco de dados criado para o SISTEMAT contém 1300 espectros de RMN 13C de sesquiterpenos lactonizados, enquanto que o utilizado para o programa simulador de espectros de RMN 13C possui 1600 substâncias codificadas. / This work shows the use of computational methods and the results obtained in the structure determination of sesquiterpene lactones. Our research group have developed in the last years the expert system named SISTEMAT, to structure determination of natural products. This system have programs used to construct a database able to store any kind of information about the compounds and programs used to retrieve and analyse informations obtained in the database. It was also planned a program to make predictions of 13C NMR spectra of sesquiterpene lactones. It uses a codification working with tridimensional substructures. The program treats each carbon atom and its neighbouring as a substructure. It can scan all the database for other equal or similar chemical shift values that can be used to predict the 13C NMR spectrum for a new compound. The current database contains about 1300 13C NMR spectra of sesquiterpene lactones. The other database used in the program for 13C NMR prediction has 1600 compounds.

<p>Various chemical properties can be used to characterise dissolving pulp. The quality of the pulp must be carefully controlled to ensure that it meets the requirements for its intended use and the further processes to be applied. If it is to be used to prepare viscose, or other cellulose derivatives, the key prop-erties of the pulp are its accessibility and reactivity. The studies described in this thesis investigated the potential utility of multivariate analysis of chemi-cal and spectral data for determining the properties of dissolving pulp. Dis-solving pulps produced by a two-stage sulfite process, both in the laboratory and a factory were produced pulps for this purpose. The analyses showed that pulp with high reactivity had short cellulose chains, low molecular weight, low polydispersity, low hemicellulose content, high content of ace-tone-extractable compounds, and high surface charge compared to pulp with low reactivity. Important chemical properties of the pulp, such as viscosity and alkali resistance, were successfully predicted from near infrared spectra. Predicting the reactivity, or the viscose filterability, of the pulp was more complex. Several chemical methods for analyzing the reactivity of the pulp were examined. The influence of the cellulose structure at the supermolecu-lar level on the reactivity of the pulp was explored by multivariate analysis of solid state 13C nuclear magnetic resonance spectra. Structural variables considered included: differences in hydrogen bonding, contents of hemicel-lulose, amorphous cellulose and crystalline cellulose I and II. Pulps with high reactivity have higher contents of cellulose I and amorphous cellulose than pulps with low reactivity, which have higher contents of cellulose II and hemicellulose.</p>