The sap beetle genus Carpophilus Stephens (Coleoptera: Nitidulidae) is a large genus consisting of over 200 species and are found worldwide. Several species are important pests of crops and stored products, and are frequently intercepted as part of biosecurity operations. The genus is poorly known taxonomically, and there are several species groups that are challenging to identify by morphological methods. In particular, two species found across the Pacific, C. maculatus Murray and C. oculatus Murray are frequently confused with each other. These two species are similar in size and colour, but differ primarily by the shape of the colour pattern on their elytra. However, this colour pattern is highly variable within both species, leading to ambiguity in the indentification of these species. Within C. oculatus, three subspecies have been described based on differences in the male genitalia and pronotal punctation: C. o. oculatus and C. o. gilloglyi Dobson are distributed widely across the Pacific, while C. o. cheesmani Dobson is known only from Vanuatu. A search of literature records and specimen collections revealed 32 species of Carpophilus recorded from the Pacific region. In addition there remain several unidentified specimens representing at least four species, two of which will be described subsequent to this research. A number of species recorded in the literature may have been misidentified, and these require further field collections and inspection of museum specimens to confirm their presence in the Pacific. To test the validity of the subspecies of C. oculatus, and its distinctiveness from C. maculatus, a phylogeny of available specimens of Carpophilus was inferred from one mitochondrial gene (cytochrome c oxidase subunit I (COI)), and two nuclear genes (28S ribsomal RNA (28S) and the internal transcribed spacer 2 (ITS2)). These data show large genetic distances between the three subspecies of C. oculatus of 7-12%. Given these distances are similar to those between other species in the genus, this indicates these subspecies may be elevated to full species. The data also consistently support a monophyletic relationship between C. o. oculatus and C. o. gilloglyi. Nuclear genes also support C. o. cheesmani as part of a clade with the other subspecies, but these relationships are unresolved in COI. Carpophilus maculatus was not supported as being the sister taxon of the C. o. oculatus and C. o. gilloglyi clade. Other relationships within Carpophilus were unresolved, possibly due to a combination of incomplete taxon sampling, and saturation of substitutions within the COI gene. Phylogeographic analysis of specimens collected from several localities within the range of C. oculatus showed that, with only one exception, there were no shared haplotypes between archipelagoes. This result suggests it may be possible to determine the provenence of intercepted specimens, providing further information regarding potential invasion pathways. A degree of geographic structuring was also present within C. o. gilloglyi, being separated into a western clade found in Fiji and Rotuma and an eastern clade distributed from the Kermadec Islands and Tonga to French Polynesia. This separation was most profound in COI data, with a mean pairwise distance between the clades of 7%. ITS2 data also demonstrates a degree of differentiation between the two clades, based on differences in the insertions and deletions between the clades. The variability in the shape and colour of the elytral pattern of C. oculatus was also investigated. Colour was quantified using a method based on Red-Green-Blue (RGB) colour values derived from digital photographs, while an outline analysis of the elytral pattern was conducted using elliptic Fourier analysis (EFA). Principal Components Analysis of the RGB values and EFA coefficients showed no clear separation between subspecies, nor were any trends correlated with host fruit or collection localities. Variation at all levels and all measures studied in this thesis show that this geographic region and this genus of beetles offer intruiging insights into speciation, biogeography and biological invasions. There is much scope for further research on the causes and consequences of this variation and the lives of these interesting insects.

The native plant communities of Canterbury, South Island, New Zealand have been severely modified and degraded and the Canterbury Plain (750,000 ha) retains few remnants of its original forest and other ecosystems. The research presented here considers the mutualistic roles of exotic and indigenous species in the process of restoring degraded landscapes. Exotic species may have an important role in the (re) establishment of desired indigenous species, and may influence succession through to a forest dominated by them. One aspect of this work describes indigenous plant community regeneration facilitated by exotic willow (Salix spp.) woodland on the Canterbury Plain. Natural colonisation of the willow woodland by native plants was investigated, with respect to variation in the physical environment in the willow stand. Key factors in the success of willow woodland as a nursery for regeneration of native vegetation include: distance to the nearest seed source, the ability to attract seed dispersers (recruitment only occurred under perch sites), flooding potential (higher recruitment in areas less likely to flood) and possibly light availability. Control of vertebrate (and invertebrate) herbivory is also necessary for successful restoration. A second aspect was a field experiment in open pasture and in a non-native remnant woodland which was then used to investigate the effects of shelter, plant spacing, mulching and fertiliser on growth and survival of planted native woody species. With minimal management, the selected mid-late successional plants established poorly in the open pasture and had low survival rates (e.g.,Dacrycarpus dacrydioides, Pseudopanax arboreus, Aristotelia serrata, Melicytus ramiflorus). Only narrow-leaved species (e.g., Plagianthus reg ius, Hoheria angustifolia, Hebe salicifolia, Cordyline australis) survived this open pasture planting. In contrast, most species (broad and narrow-leaved) established under the sheltered sites. Exotic nursery vegetation and the establishment of native species, which will, in time, act as a seed source, will be important in successfully restoring a sustainable indigenous element in the cultural landscape of Canterbury. Ecological restoration requires an integrated approach, identifying and understanding the component processes of regeneration, and of the particular aspects/characteristics of the sites involved. This research shows that naturally established plants where existing shelter is available (in this case established willows) tend to have higher growth rates than individually planted plants in open situations, and that the availability of a suitable seed source can also contribute to successful establishment and growth rates. The meeting of restoration targets on the Canterbury Plain may be accelerated, and costs reduced, through the utilisation of areas where exotic species occur (for instance, extensive willow stands in riparian areas adjacent to waterways) and more particularly, where a local seed source is also available. The findings of this research can contribute to restoration management in helping identify the best practices, based on research, that can lead to the restoration of original plant and animal communities.

Recent declines in returns from primary forest products in New Zealand and projected increases in world food prices have led to the land-use conversion from plantation forest to pastoral farming in many lowland areas. After decades of forest cover the soils are in many cases less than adequate for pastoral farming, as they are acidic, with toxic levels of exchangeable aluminum, and contain low levels of available nitrogen (N), very high carbon (C):N ratio, and are devoid of earthworms and structural integrity. Overcoming the major site limitations of low soil pH and available N was a major priority and a field experiment was established in April 2005 to determine the impact of various rates of lime and N in relation to pasture establishment and production. Concerns about the short and long-term effects of these inputs on biological soil quality gave rise to the present study. The effects of land-use change and establishment inputs were assessed by comparison of selected treatment plots with two adjacent reference sites (long-term pasture and a 60–year Pinus radiata forest) on the same soil type. The effects of lime and N on soil biological quality were investigated under field and controlled environment conditions by determination of: microbial community structure (phospholipid fatty acids - PLFA), microbial biomass (total PLFA), and microbial activity (dehydrogenase activity). Soil physical (percentage water-stable aggregates) and chemical (pH, and total C and N) properties were also determined. Similarly, the effects of earthworm addition on soil biological properties were explored in a short-term glasshouse pot experiment. The role of earthworms as indicators of soil biological quality in the field was assumed by nematodes and these were assessed in field trial plots and the reference sites mentioned above. Land-use change and applications of lime and N contributed to changing the microbial community structure determined by principal component analysis of transformed PLFA data. However, the effect of lime was more pronounced in the field, while N contributed most to changing microbial community structure in the glasshouse. Mean microbial activity in the field increased from 4 µg dwt/hr without lime to 16 and 21 µg dwt/hr where lime was applied at 5 and 10 tons/hectare (t/ha), respectively. Mean microbial activity in the field was markedly higher (7-fold) than in the glasshouse at similar rates of lime. Lime application also increased soil moisture retention in the field, mean gravimetric soil moisture increased from 0.33 in control plots to 0.38 and 0.39 in plots treated with 5 and 10 t/ha lime, respectively. Lime application was associated with greater soil aggregate stability. Soils from test plots treated with 5 and 10 tons/ha lime had 45-50% water-stable aggregates compared to 34% in treatments without lime. After 16 weeks in pots, earthworm treatments increased mean plant dry matter (DM)/pot by at least 19% above the control. The increase was attributed primarily to greater N mineralization in the presence of earthworms. For the duration of the trial the earthworm species tested (Apporectodea caliginosa and Lumbricus rubellus, individually or combined) did not affect any of the measured soil microbial properties. However, the survival rate of A. caliginosa was 83% compared to 25% for L. rubellus. The control not receiving any lime or N and plots treated with 10t/ha lime and 200 kgN/ha had similar nematodes species composition, comprising 40% each of bacterial and fungal feeding nematodes. They differed markedly from the reference sites as the forest soil was dominated by plant associated species (38%) and the long-term pasture had 44% plant parasitic nematodes. Accordingly, the soil food web condition inferred from nematode faunal analysis characterized all test plots as basal, stressed and depleted, while the forest soil was categorized as highly structured and fungal dominated. The findings of this thesis demonstrated that land-use change from forest to pasture can have significant impacts on soil biological properties, earthworms can contribute to pasture productivity even in the short term, and nematode faunal analysis is a robust and reliable indicator of soil biological quality.

Despite extensive international acceptance of the critical role of mammalian post-dispersal seed predation in many plant communities, in New Zealand we have limited knowledge of these predators’ influence on plant recruitment in our forests. The principle objective of my thesis was to determine the importance of exotic mammals as post-dispersal seed predators in a New Zealand conifer-broadleaf forest remnant. To address this goal, I used a series of field-based experiments where the actions of different post-dispersal seed predators were separated by wire-mesh exclosures. My study was conducted at Mount Peel Forest Park Scenic Reserve, South Canterbury, New Zealand. Being a human modified conifer forest currently dominated by broadleaf species, it is typical of forest remnants in New Zealand. This presented an opportunity to study a wide range of both potential post-dispersal seed predators and broadleaf tree species. My findings indicate that exotic mammals are not only post-dispersal seed predators at Peel Forest, but are responsible for the majority of post-dispersal predation events observed. Ship rats (Rattus rattus) were the dominant post-dispersal seed predators, while brushtail possums (Trichosurus vulpecula), house mice (Mus musculus) and native invertebrates were also important post-dispersal seed predators for several tree species. Through use of time-lapse video and cafeteria experiments I found that exotic mammalian seed predators, when compared to native invertebrate seed predators, preyed upon larger-seeded plant species and were responsible for considerable seed losses of several tree species. However, exotic mammalian seed predators do share several foraging characteristics with native invertebrate seed predators, as predators foraged in similar habitats and responded in a similar way to changes in seed density. In investigating if post-dispersal seed predation by mammals had a flow-on effect to plant recruitment, I observed natural seedling densities at Peel Forest were significantly higher in the absence of mammalian seed predators, but I found no evidence that the presence of mammals significantly altered the overall species richness. At the community level, I did not find an interaction between habitat and exotic mammals, however I present evidence that for individual plant species a significant mammal : habitat interaction occurred. Consequently, even though my cafeteria experiment implied there was no significant difference in the overall amount of seed preyed upon within different habitats, the less favourable microsite conditions for germination under an intact continuous canopy allows mammals to exacerbate habitat-related patterns of seed mortality and have a noticeable effect on seedling establishment. In an effort to validate the use of manipulative experiments to predict the long-term effect of post-dispersal seed predation on plant dynamics, I attempted to link results of my cafeteria experiment with observed seedling abundance at Peel Forest. Seven tree species were used in this comparison and a strong correlation was observed. This result shows that the level of post-dispersal seed predation determined in the cafeteria experiment provided a good predictor of the effect of mammalian post-dispersal seed predation on seedling establishment. To fully gauge the impact of mammalian post-dispersal seed predators on seedling establishment, the relationship between these seed predators and the type of recruitment limitation experienced by a plant species was also investigated. By using a combination of seed addition, plot manipulations and seed predator exclusion I was able to investigate this relationship. I found evidence that seed limitation at Peel Forest is positively correlated with seed size, and that while mammalian post-dispersal seed predators can further reduce plant recruitment of plant species experiencing seed limitation, the influence of mammals in determining plant recruitment was limited for plant species experiencing microsite limitation. My study has proven that exotic mammals are now the dominant post-dispersal seed predators at Peel Forest, the amount of seed preyed upon varies among plant species, and post-dispersal seed predation by mammalian species can lead to differences in seedling richness and abundance. I proved that the influence of exotic mammals on seedling establishment is also linked to habitat structure and recruitment limitations. When combined these observations suggest that exotic mammalian post-dispersal seed predators may play an important role in determining landscape abundance and distribution of plants at Peel Forest.

In their native habitat of Central and South America, capuchin monkeys (Cebus) spend 45% to 55% of their day foraging and a further 20% travelling. Once these monkeys are introduced into captive environments their diets are selective, seasonal and presented to them by their keepers. The captive environment often leads to various behavioural abnormalities and compensatory behaviours or stereotypies. To address this issue, environmental enrichment can be employed to reduce, cure or prevent such an occurrence. Enrichment can reduce stress, while increasing animal well-being and health in captivity. Despite previous work a better understanding of enrichment, for most neo-tropical primate species, is necessary, in order to improve their captive lifestyles. Feeding of captive primates is more complex than providing a balanced nutritional diet as it must also meet their ethological needs. The manipulation of the presentation of the diet has been shown to significantly decrease the incidence of resting, while significantly increasing the incidence of playing, grooming, foraging and manual manipulation of dietary items. Eleven capuchin monkeys were presented with four different feeding treatments (i.e. cut food presented in bowls, cut food presented around the enclosure, uncut food presented around the enclosure and novel feeding devices presented around the enclosure) from December 2007 until May 2008. At the start of every month one of three feeding treatments was introduced with the cut food in bowls feeding treatment interleaved between the treatments. The different feeding treatments required the monkeys to search for their food, break-up their food into manageable sizes, and obtain food in touch-, tool- and manipulative-dependent methods in order to allow the monkeys an opportunity to display increased activity more in line with their wild conspecifics. The capuchins displayed a period of intense foraging directly following feeding. This period significantly increased (from 44 to 121 min.), along with foraging events and the proportion of time spent foraging, which was more in line with their wild conspecifics. In addition, the frequency of occurrence and the proportion of time spent on locomotion and resting was shown to decrease. Also, abnormal behaviours ceased to occur during the study. Environmental enrichment is a useful tool for providing stimulation, redistributing activity levels more in line with wild conspecifics and to combat abnormal and compensatory behaviours.

Invasive species are well known to cause millions of dollars of economic as well as ecological damage around the world. New Zealand, as an island nation, is fortunate because it has the opportunity to regulate and monitor travel and trade to prevent the establishment of new species. Nevertheless foreign species continue to arrive at the borders and continue to cross them, thus requiring some form of management. The control and management of a new incursion of an invasive species would clearly benefit from predictive tools that might indicate where and how quickly the species is likely to spread after it has established. During the process of spread an invasing species must interact with a complex and heterogeneous environment and the suitability of the habitat in a region determines whether it survives. Many dispersal models ignore such interactions and while they may be interesting theoretical models, they are less useful for practical management of invasive species. The purpose of this study was to create and investigate the behaviour of a spatially explicit model that simulates insect dispersal over realistic landscapes. The spatially explicit model (Modular Dispersal in GIS, MDiG) was designed as am open-source modular framework for dispersal simulation integrated within a GIS. The model modules were designed to model an an approximation of local diffusion, long distance dispersal, growth, and chance population mortality based on the underlying suitability of a region for establishment of a viable population. The spatially explicit model has at its core a dispersal module to simulate long distance dispersal based an underlying probability distribution of dispersal events. This study illustrates how to extract the frequency of long distance dispersal events, as well as their distance, from time stamped occurrence data, to fit a Cauchy probability distribution that comprises the dispersal module. An investigation of the long distance dispersal modules behaviour showed that, in general, it generated predictions of the rate of spread consistent with those of analytical partial differential and integrodifference equations. However, there were some differences. Spread rate was found to be mainly dependent on the measurement technique used to determine the invasion front or boundary, therefore an alternative method to determine the boundary of a population for fat-tailed dispersal kernels is presented. The method is based on the point of greatest change in population density. While previously it was thought that number of foci rather than foci size was more important in stratified dispersal and that finer resolution simulations would spread more quickly, simulations in this study showed that there is an optimal resolution for higher spread rates and rate of area increase. Additionally, much research has suggested that the observed lag at the beginning of an invasion may be due to lack of suitable habitats or low probability of individuals striking the right combination of conditions in a highly heterogeneous environment. This study shows an alternative explanation may simply be fewer dispersal event sources. A case study is described that involved the application of the spatially explicit dispersal model to Argentine ant spread to recreate the invasion history of that species in New Zealand. Argentine ant is a global invasive pest which arrived in New Zealand in 1990 and has since spread to both main islands of New Zealand, primarily through human mediated dispersal. The spatially explicit simulation model and its prediction ability were compared to that of a uniform spread model based on equivalent total area covered. While the uniform spread model gave more accurate predictions of observed occurrences early in the invasion process it was less effective as the invasion progressed. The spatially explicit model predicted areas of high probability of establishment (hot spots) consistent with where populations have been found but accuracy varied between 40-70% depending on the year of the simulation and parameter selection. While the uniform spread model sometimes slightly outperformed or was equivalent to the simulation with respect to accuracy early in the invasion process, it did not show the relative risk of establishment and was less effective later in the invasion when stochastic random events generated by the simulation model were averaged to represent trends in the pattern of spread. Additionally, probabilistic predictions as generated by the spatially explicit model allow the uncertainty of prediction to be characterised and communicated. This thesis demonstrates that heterogeneous spread models can give more insight and detail than one dimensional or homogeneous spread models but that both can be useful at different stages of the invasion process. The importance of compiling appropriate data on dispersal and habitat suitability to aid invasion management has been highlighted. Additionally, a number of important hypotheses that need to be addressed to increase understanding of how species interact with the complex environment, have been identified and discussed.

Knowledge of the interactions among species and communities is vital for their management and protection. Increasingly, the role of marine protected areas in this regard is being recognised, primarily because of the potential for previously-harvested species to increase in density and biomass, and the linkages among species to be restored. Monitoring and research was conducted within and surrounding two marine reserves on the east coast of the North Island of New Zealand – Te Tapuwae o Rongokako, near Gisborne, and Te Angiangi, south of Napier. The aim was to describe the biological characteristics of spiny lobsters (Jasus edwardsii) in the absence of fishing, and to describe the effects of fishing and protection on lobster populations and the communities of which they are a component. Diver and pot surveys showed that lobsters were significantly more abundant within the reserves than in the surrounding fisheries and that the populations were comprised of a larger proportion of legal-sized individuals. Higher female fecundity within Te Tapuwae o Rongokako Marine Reserve compared with the surrounding fishery was proposed to be primarily a result of increased availability of large males within the reserve. The impact of the fishery on lobsters was also evidenced in the lower tail width to carapace length ratio of the fished population compared to the population within Te Tapuwae o Rongokako Marine Reserve, due to the minimum legal size for Jasus edwardsii in New Zealand being based on tail width. The largest tagging study ever to be conducted in a New Zealand marine reserve showed that sublegal male lobsters within Te Tapuwae o Rongokako Marine Reserve were growing on average faster than the same sized individuals outside the reserve, potentially as a result of the effects of handling and / or size-selective fishing. A decrease in growth rate over time was recorded in male lobsters within the reserve, which coincided with an increase in catch per unit effort and may indicate that density-dependent effects are operating. Distinct seasonal movements of tagged lobsters were recorded, with the vast majority of movements taking place within reefs. Where the boundaries of the reserve crossed reef habitat, significant movement of lobsters across the boundaries occurred. Lobsters within Te Tapuwae o Rongokako Marine Reserve not only exhibited cannibalistic behaviour but foraged during the day, including on intertidal reef platforms at high tide, potentially as a behavioural response to increased competition for food – behaviour not previously reported for this species. Outside the reserve, lobster bait apparently provided an alternative protein source but despite this supplementation of diet, these lobsters were in poorer nutritional condition, as evidenced by their lower body weights relative to carapace length and tail width for both sexes. Lobsters outside the reserve were also significantly more affected by a bacterial infection associated with handling, than lobsters within the reserve. These findings have significant implications for fisheries management and for the design and management of marine protected areas (MPAs). This study demonstrates that many of the biological parameters used in evaluating harvest strategies in the New Zealand lobster fishery may be biased unless collected from populations with a natural size structure, such as may occur within marine protected areas.

New Zealand’s isolation and periods of marine transgression have limited its biota to an extent which can be considered depauperate, even by island standards. Endemic vertebrates are rare and prominent invertebrate families, such as the renowned forest defoliators of the Lymantriidae, are absent. The proven vulnerability of the flora to introduced vertebrates reaffirms a belief in the invasiveness of islands and fuels the contingency plans aimed at averting similar devastation from further alien invertebrate defoliators. Nothofagus is a dominant element of the climax forests of New Zealand and the larger landmasses bordering the South Pacific Ocean. Assessments of the resistance to defoliation of continental and New Zealand species of Nothofagus, and a range of other forest genera endemic to New Zealand, was undertaken using bioassays of naïve polyphagous defoliators. The bioassays were undertaken in Europe, utilising gypsy moth, Lymantria dispar (Lepidoptera: Lymantriidae) and the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae) as defoliators, fed foliage plants growing in European arboreta. In New Zealand, bioassays utilised Australian painted apple moth, Teia anartoides (Lepidoptera: Lymantriidae) and tree species from local arboreta, gardens and natural populations. Larval growth rate was the primary parameter recorded to assess plant resistance. The relevance of growth rate was investigated by comparison with other recorded parameters and resistance to a surrogate pathogen, in the form of commercially available bio-insecticide. Larval growth rate was positively correlated with survivorship, potential fecundity, mating success and resistance to disease. The growth rate of larvae fed Nothofagus was positively correlated to the species-specific leaf nitrogen content. The results of the bioassays showed that despite the accepted paradigms, New Zealand’s flora was largely resistant to exotic defoliators. As an explanation of this apparent anomaly, the Island Resource Allocation (IRA) hypothesis was developed and posits that ‘the palatability iv of a plant to invertebrate herbivores is proportional to the geographic range of the plant’. The basis for the IRA hypothesis proposes a redefinition of the fundamental ecological principle of the species: area relationship. Islands, or similarly geographically constrained ecosystems, which support lower biodiversity, have impoverished trophic levels and consequently have weaker top-down regulation of herbivores by natural enemies. The IRA hypothesis argues that island ecosystem stability is achieved through the bottom-up process of plant defence. The IRA hypothesis was tested intra-specifically using bioassays using painted apple moth in which larvae were offered foliage of specimens from naturally discontinuous populations of Nothofagus truncata. The results supported the hypothesis in that the smallest populations of N. truncata exhibited the greatest resistance to the defoliator. The IRA hypothesis and a demonstrated mechanism for a differential resistance in Nothofagus species could resolve a number of enduring debates in ecology. Habitat area appears to explain the relative strengths of top-down and bottom-up regulation of herbivores. It also predicts the strengths of reciprocal evolution within the geographic mosaic of co-evolution and highlights the influence of biodiversity in invasive ecology. It may also help to resolve the contentious and extremely relevant debate of the role of biodiversity in ecosystem function.

Recent declines in returns from primary forest products in New Zealand and projected increases in world food prices have led to the land-use conversion from plantation forest to pastoral farming in many lowland areas. After decades of forest cover the soils are in many cases less than adequate for pastoral farming, as they are acidic, with toxic levels of exchangeable aluminum, and contain low levels of available nitrogen (N), very high carbon (C):N ratio, and are devoid of earthworms and structural integrity. Overcoming the major site limitations of low soil pH and available N was a major priority and a field experiment was established in April 2005 to determine the impact of various rates of lime and N in relation to pasture establishment and production. Concerns about the short and long-term effects of these inputs on biological soil quality gave rise to the present study. The effects of land-use change and establishment inputs were assessed by comparison of selected treatment plots with two adjacent reference sites (long-term pasture and a 60–year Pinus radiata forest) on the same soil type. The effects of lime and N on soil biological quality were investigated under field and controlled environment conditions by determination of: microbial community structure (phospholipid fatty acids - PLFA), microbial biomass (total PLFA), and microbial activity (dehydrogenase activity). Soil physical (percentage water-stable aggregates) and chemical (pH, and total C and N) properties were also determined. Similarly, the effects of earthworm addition on soil biological properties were explored in a short-term glasshouse pot experiment. The role of earthworms as indicators of soil biological quality in the field was assumed by nematodes and these were assessed in field trial plots and the reference sites mentioned above. Land-use change and applications of lime and N contributed to changing the microbial community structure determined by principal component analysis of transformed PLFA data. However, the effect of lime was more pronounced in the field, while N contributed most to changing microbial community structure in the glasshouse. Mean microbial activity in the field increased from 4 µg dwt/hr without lime to 16 and 21 µg dwt/hr where lime was applied at 5 and 10 tons/hectare (t/ha), respectively. Mean microbial activity in the field was markedly higher (7-fold) than in the glasshouse at similar rates of lime. Lime application also increased soil moisture retention in the field, mean gravimetric soil moisture increased from 0.33 in control plots to 0.38 and 0.39 in plots treated with 5 and 10 t/ha lime, respectively. Lime application was associated with greater soil aggregate stability. Soils from test plots treated with 5 and 10 tons/ha lime had 45-50% water-stable aggregates compared to 34% in treatments without lime. After 16 weeks in pots, earthworm treatments increased mean plant dry matter (DM)/pot by at least 19% above the control. The increase was attributed primarily to greater N mineralization in the presence of earthworms. For the duration of the trial the earthworm species tested (Apporectodea caliginosa and Lumbricus rubellus, individually or combined) did not affect any of the measured soil microbial properties. However, the survival rate of A. caliginosa was 83% compared to 25% for L. rubellus. The control not receiving any lime or N and plots treated with 10t/ha lime and 200 kgN/ha had similar nematodes species composition, comprising 40% each of bacterial and fungal feeding nematodes. They differed markedly from the reference sites as the forest soil was dominated by plant associated species (38%) and the long-term pasture had 44% plant parasitic nematodes. Accordingly, the soil food web condition inferred from nematode faunal analysis characterized all test plots as basal, stressed and depleted, while the forest soil was categorized as highly structured and fungal dominated. The findings of this thesis demonstrated that land-use change from forest to pasture can have significant impacts on soil biological properties, earthworms can contribute to pasture productivity even in the short term, and nematode faunal analysis is a robust and reliable indicator of soil biological quality.

Knowledge of the interactions among species and communities is vital for their management and protection. Increasingly, the role of marine protected areas in this regard is being recognised, primarily because of the potential for previously-harvested species to increase in density and biomass, and the linkages among species to be restored. Monitoring and research was conducted within and surrounding two marine reserves on the east coast of the North Island of New Zealand – Te Tapuwae o Rongokako, near Gisborne, and Te Angiangi, south of Napier. The aim was to describe the biological characteristics of spiny lobsters (Jasus edwardsii) in the absence of fishing, and to describe the effects of fishing and protection on lobster populations and the communities of which they are a component. Diver and pot surveys showed that lobsters were significantly more abundant within the reserves than in the surrounding fisheries and that the populations were comprised of a larger proportion of legal-sized individuals. Higher female fecundity within Te Tapuwae o Rongokako Marine Reserve compared with the surrounding fishery was proposed to be primarily a result of increased availability of large males within the reserve. The impact of the fishery on lobsters was also evidenced in the lower tail width to carapace length ratio of the fished population compared to the population within Te Tapuwae o Rongokako Marine Reserve, due to the minimum legal size for Jasus edwardsii in New Zealand being based on tail width. The largest tagging study ever to be conducted in a New Zealand marine reserve showed that sublegal male lobsters within Te Tapuwae o Rongokako Marine Reserve were growing on average faster than the same sized individuals outside the reserve, potentially as a result of the effects of handling and / or size-selective fishing. A decrease in growth rate over time was recorded in male lobsters within the reserve, which coincided with an increase in catch per unit effort and may indicate that density-dependent effects are operating. Distinct seasonal movements of tagged lobsters were recorded, with the vast majority of movements taking place within reefs. Where the boundaries of the reserve crossed reef habitat, significant movement of lobsters across the boundaries occurred. Lobsters within Te Tapuwae o Rongokako Marine Reserve not only exhibited cannibalistic behaviour but foraged during the day, including on intertidal reef platforms at high tide, potentially as a behavioural response to increased competition for food – behaviour not previously reported for this species. Outside the reserve, lobster bait apparently provided an alternative protein source but despite this supplementation of diet, these lobsters were in poorer nutritional condition, as evidenced by their lower body weights relative to carapace length and tail width for both sexes. Lobsters outside the reserve were also significantly more affected by a bacterial infection associated with handling, than lobsters within the reserve. These findings have significant implications for fisheries management and for the design and management of marine protected areas (MPAs). This study demonstrates that many of the biological parameters used in evaluating harvest strategies in the New Zealand lobster fishery may be biased unless collected from populations with a natural size structure, such as may occur within marine protected areas.