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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
561

TbISWI and its role in transcriptional control in Trypanosoma brucei

Kushwaha, Manish January 2010 (has links)
ISWI is a member of a versatile family of ATP-dependent chromatin remodelling complexes involved not only in transcription regulation (initiation, elongation and termination), but also in other cellular functions like maintenance of higher order chromatin structure and DNA replication. TbISWI, a novel ATPase of the ISWI family in Trypanosoma brucei, is involved in the transcriptional repression of silent VSG expression sites (ESs) in both bloodstream form (BF) and procyclic form (PF) life cycle stages of the parasite. Using in silico analysis, I have found that TbISWI is well conserved across the eukaryotic lineage, including those members of the order Kinetoplastida that do not exhibit antigenic variation. Compared to the ISWIs of higher eukaryotes, TbISWI has greater representation of random coils within its structure, an indicator of more structural fluidity and flexibility of interaction with multiple protein partners. Using an eGFP reporter based assay, I have studied the role of TbISWI in transcriptional repression of silent areas of the T. brucei genome. TbISWI was found to be involved in preventing inappropriate transcription of the silent VSG repertoires. TbISWI was also found to downregulate transcription in RNA pol I, but not pol II, transcription units. These results argue for the presence of at least two functionally distinct TbISWI complexes in T. brucei. Using DNA staining and fluorescence in situ hybridisation (FISH), I have investigated the potential effect of TbISWI depletion on cell cycle progression and minichromosome segregation. I did not find any evidence for the role of TbISWI in the maintenance of centromeric heterochromatin in T. brucei.
562

Adaptive map alignment in the superior colliculus of the barn owl : a neuromorphic implementation

Huo, Juan January 2010 (has links)
Adaptation is one of the basic phenomena of biology, while adaptability is an important feature for neural network. Young barn owl can well adapt its visual and auditory integration to the environmental change, such as prism wearing. At first, a mathematical model is introduced by the related study in biological experiment. The model well explained the mechanism of the sensory map realignment through axongenesis and synaptogenesis. Simulation results of this model are consistent with the biological data. Thereafter, to test the model’s application in hardware, the model is implemented into a robot. Visual and auditory signals are acquired by the sensors of the robot and transferred back to PC through bluetooth. Results of the robot experiment are presented, which shows the SC model allowing the robot to adjust visual and auditory integration to counteract the effects of a prism. Finally, based on the model, a silicon Superior Colliculus is designed in VLSI circuit and fabricated. Performance of the fabricated chip has shown the synaptogenesis and axogenesis can be emulated in VLSI circuit. The circuit of neural model provides a new method to update signals and reconfigure the switch network (the chip has an automatic reconfigurable network which is used to correct the disparity between signals). The chip is also the first Superior Colliculus VLSI circuit to emulate the sensory map realignment.
563

Invadolysin, a conserved lipid droplet-associated protease interacts with mitochondrial ATP synthase and regulates mitochondrial metabolism in Drosophila

Duca, Edward January 2011 (has links)
Invadolysin (inv) is a member of the M8 class of zinc-metalloproteases and is conserved throughout metazoans. It is essential for development and invadolysin homozygous Drosophila mutants are third instar larval lethal. These larvae exhibit a reduced larval brain size and an absence of imaginal discs. Detailed analysis showed that inv mutants exhibit pleiotropic effects, including defects with chromosome architecture, cell cycle progression, spindle assembly, nuclear envelope dynamics, protein turnover and problems with germ cell migration. These findings indicated that Invadolysin must have a critical role in Drosophila. In order to better understand these roles, I set out to identify genetic interactors of invadolysin. I performed a genetic screen scoring for enhancer/suppressor modification of a ‘rough eye’ phenotype induced by invadolysin overexpression. Screening against the Drosdel ‘deficiency kit’ identified numerous genetic interactors including genes linked to energy regulation, glucose and fatty acid pathways. Immunofluorescence experiments in cultured cells showed that H. sapiens Invadolysin localises to the surface of lipid droplets (LD), and subcellular fractionation confirmed its enrichment to these structures. Lipid droplets are highly dynamic organelles involved not only in energy storage but also in protein sequestration, protein and membrane trafficking, and cell signaling. Drosophila fat bodies are enriched in LDs and therefore important energy stores. In addition, they are nutritional sensors and regulators, which are proposed to be the ortholog of vertebrate liver and adipose tissue. Mutant inv fat bodies appeared smaller and thinner than wild type fat body, and accumulated lower levels of triacylgylcerides. This indicated that the loss of invadolysin might be affecting lipid metabolism and storage, confirming the genetic data. However, it was not clear whether these effects were due to the direct action of Invadolysin. Hence, transgenic fly lines expressing either HA, RFP or FLAG tagged forms of Invadolysin were generated to identify physical interactors of Invadolysin. Subsequent mass spectrometry analysis detected ATP synthase-α, -β and -d as interactors. This result suggested that Invadolysin might play a role in regulating mitochondrial function, which might then be manifest in the fat body as the defects previously observed. Energy levels are known to affect the cell cycle, cell growth, lipid metabolism and inevitably development. Further in vivo and in vitro experiments confirmed this hypothesis. Genetic crosses confirmed the interaction of invadolysin with ATP-synthase subunit-α, whilst staining of mitochondria in mutant third instar larval fat bodies suggested decreased mitochondrial activity. Mutants also showed lower ATP levels and an accumulation of reactive oxygen species, hence indicating the possibility of a dysfunctional electron transport chain. Lipid droplets are known to interact with mitochondria, whilst ATP synthase has been found on lipid droplets by proteomic studies in Drosophila. Therefore, based on these data, we propose that Invadolysin is found, with ATP synthase, on lipid droplets, where Invadolysin (likely acting as a protease) could be aiding the normal processing or assembly of ATP synthase. This interaction is vital for the proper functioning of ATP synthase, and hence mitochondria. In this scenario, cellular ATP needs are not met, energy levels drop which results in an inhibition of fatty acid synthesis, cell and organismal growth defects.
564

Characterisation and expression of copper homeostasis genes in sea bream (Sparus aurata)

Minghetti, Matteo January 2009 (has links)
The redox properties of Copper (Cu) make it both an ideal cofactor for many enzymes, and, in its free form, a highly toxic molecule capable of stimulating production of reactive oxygen species or binding to protein thiol groups. Therefore, living organisms have evolved homeostatic systems to “handle” Cu avoiding dangerous and wasteful aspecific interactions. These systems comprise uptake, carrier, storage and excretion proteins. The importance of Cu-homeostatic systems was initially discovered in humans where alterations of Cu-excretory proteins were shown to be responsible for two lethal genetic disorders; the Wilson and Menkes diseases. The levels of bioavailable Cu in the aquatic environment is important because concentrations in oceanic waters tend to be minute, whilst in some fresh and coastal waters, particularly around areas of mineral extraction, viniculture and farming operations, concentrations can be excessive. In contrast to terrestrial vertebrates, fish are not only exposed to dietary sources of copper but are also exposed to dissolved ionic copper that may enter via the skin and gills. Indeed, the latter route is important in fish and it has been demonstrated in physiological studies that under conditions of dietary deficiency, fish can satisfy their own body requirements by uptake from water. Therefore, fish must have systems relating to both gill and gut to enable maintenance of body homeostasis of this essential, yet toxic, metal. In an attempt to understand the mechanisms of Cu homeostasis in fish, whether under conditions of deficiency, adequacy or excess, it is essential to consider the expression of known Cu-homeostasis proteins. Thus, cDNAs for sea bream (Sparus aurata) homologues of copper transporter 1 (Ctr1), antioxidant protein 1 (Atox1), Menkes protein (ATP7A), Wilson protein (ATP7B), and metallothionein (MT), which are responsible for the uptake, delivery to the secretory pathway and scavenging of intracellular Cu, were cloned and their mRNA tissue expression levels measured. To investigate the molecular basis of the different homeostatic and toxic responses to waterborne or dietary Cu, sea bream were exposed to sub-toxic levels of Cu in the diet (130 mg/Kg of dry diet) or water (0.3 mg/L) and tissue mRNA and Cu levels were measured. Moreover, to discriminate between the effect of different metals on the transcriptional regulation of Cu homeostasis genes in fish, Sparus aurata fibroblast (SAF1) cells were exposed to sub-toxic levels of Cu (25 μM), Zn (100 μM) and Cd (10 μM). In addition, a microarray was used to gain a broader overview of the transcriptional response of SAF1 cells to Cu (25 μM). Waterborne or dietary Cu resulted in distinct expression profiles of Cu-homeostasis genes and markers of oxidative stress. After dietary exposure, Cu increased in intestine and liver, whilst after waterborne exposure Cu increased in gill and liver. Exposure to dietary Cu resulted in decreases in Ctr1 and ATP7A mRNA in both liver and intestine. Renal Ctr1 levels remained unchanged, whilst ATP7A mRNA decreased. In contrast, waterborne Cu exposure increased intestinal Ctr1 and ATP7A mRNA, and increased renal Ctr1 and decreased renal ATP7A mRNA. Both dietary and waterborne Cu increased ATP7B mRNA in liver. Metallothionein (MT) mRNA increased in liver and gill after waterborne Cu. Glutathione reductase (GR), a marker of oxidative stress, increased expression in liver and gill after waterborne Cu exposure, but decreased in intestine. Thus, exposure to Cu via water or diet has different, often opposite effects on Cu-homeostasis genes. The decrease in expression of both Cu-transport genes in intestine after dietary exposure may indicate a defensive mechanism to limit uptake of Cu. The opposite effects in intestine after waterborne exposure are more difficult to explain, but again may reflect a defence mechanism against excess bloodborne Cu coming from the gill. Since both dietary and waterborne Cu increased Cu levels in liver and increased hepatic ATP7B it is likely that well-characterised mammalian route of Cu excretion to bile is active in sea bream. However, only hepatic Cu derived from gill increased the expression of the stress markers MT and GR. This suggests that Cu is delivered to liver in a different form from gill as that from intestine, the intestinally derived pool being less toxic. Thus the increase in copper transport gene expression in intestine after gill exposure might be a mechanism to enable incorporation of excess bloodborne Cu into the intestinal pathway of Cu delivery to liver, thus minimizing toxicity. The in vitro exposure of SAF1 cells to Cu showed a similar response to liver of fish exposed to waterborne Cu indicating similar Cu availability and complexation. ATP7A mRNA levels were induced by Cu but not by Zn or Cd suggesting Cu-specific regulation. Conversely, MT and GR were induced by all metals tested. The transcriptomic analysis highlighted that the biological processes most significantly affected by Cu were secretion, protein trafficking and stress. Overall, these results show that in fish copper has distinct effects on tissue Cu transporter genes and oxidative stress depending on whether it is taken up via the gill or gut and that intestinal absorption may be required for normal uptake and metabolism of Cu, regardless of the route of uptake. Moreover, changes in mRNA levels indicate that Cu homeostasis genes, at least in fish, may be regulated at the transcriptional level. Although more work needs to be done to identify genes that are robust predictors of Cu toxicity, the microarray results presented here show a clear transcriptional fingerprint which may characterize Cu toxicity in fish.
565

Characterisation of input and output mechanisms in the zebra finch circadian system

Jones, Catherine Linda January 2011 (has links)
Circadian rhythms are biochemical, physiological, or behavioural over 24 hours. The avian circadian system is complex, involving numerous oscillators in the brain. I characterised two hypothalamic input mechanism (melatonin receptors and light) and one output mechanism (vasotocin) in the zebra finch. Melatonin receptors were cloned and expression levels investigated in the brain and in peripheral tissues. Receptors were found in all tissues, with some pronounced rhythmic mRNA expression. Tissue-specific differences in temporal distribution, peak expression and amplitude suggests melatonin have varied roles in different tissues and different receptors control/influence these roles. Effect of light in the hypothalamus was investigated by exposing light into the dark phase of an LD cycle and studying the difference in C-FOS expression. C-FOS was found in hypothalamic nuclei associated with photic transduction. C-FOS-IR cells were also found in the two known avian hypothalamic oscillators, the LHN and SCN. Arginine-Vasotocin is a neuropeptide involved in numerous bodily and nervous tissue functions, secreted within the hypothalamus and pituitary gland. Immunofluorescent experiments showed marked differences in expression, as different zeitgeber times and between species. This study has improved our understanding of avian circadian systems, providing new insights into the hypothalamic oscillator of a complex circadian organisation.
566

Force response of locust skeletal muscle

Wilson, Emma January 2010 (has links)
The force response of the locust hind leg extensor muscle to input excitation pulses is modelled. Despite the processes behind muscle contraction being well established, no broadly valid method of modelling skeletal muscle exists. Studies that compare the merits of existing models are extremely scarce and researchers make various assumptions in order to simplify the complex, nonlinear behaviour of the muscle. Locusts provide an opportunity to develop a muscle model in a simpler system, that will still show similar properties to that of mammalian muscles. In developing a model previous work is considered, and complexity is introduced in the experimental conditions in stages. This meant a model could be built up in parts. This approach reduces the need for questionably valid assumptions. The main focus of this work is modelling activated isometric muscle. Experimental data was collected by stimulating the extensor muscle and measuring the force generated at the tibia. In the first instance the response to individual stimulus pulses is modelled. This is extended to develop a predictive model capable of estimating the isometric force response to general pulse train inputs. In developing the model, data was fit to existing models, and from this an improved isometric model developed. The effect of changing the isometric muscle length is considered. Commonly changing the muscle length is assumed to just scale the force response. This assumption is poor. The dynamics of the force response were found to be modifed by the change in muscle length, and the isometric model adapted to include this dependency. Results related to the non-isometric behaviour are also presented. Passive muscle is usually just modelled over the lengthening period, however, the whole stretch-shorten cycle is considered here. A model, adapted from the standard linear model, is developed to describe the passive force response.
567

Regulation of cell fate and cell behaviour during primitive endoderm formation in the early mouse embryo

Saiz, Nestor January 2012 (has links)
The preimplantation stages of mammalian development are dedicated to the differentiation of two extraembryonic epithelia, the trophectoderm (TE) and the primitive endoderm (PrE), and their segregation from the pluripotent embryonic lineage, the epiblast. The TE and PrE are responsible for implantation into the uterus and for producing the tissues that will support and pattern the epiblast as it develops into the foetus. PrE and epiblast are formed in a two step process that involves random cell fate specification, mediated by fibroblast growth factor (FGF) signalling, and cell sorting through several mechanisms. In the present work I have addressed aspects of both steps of this process. Chimaera assays showed that epiblast precursors transplanted onto a recipient embryo rarely differentiate into PrE, while PrE precursors are able to switch their identity and become epiblast. Transient stimulation or inhibition of the FGF4-ERK pathway in the chimaeras can modify the behaviour of these cells and restore the plasticity of epiblast precursors. This work shows that epiblast precursors are refractory to differentiation signals, thus ensuring the preservation of the embryonic lineage. I have also found that atypical Protein Kinase C (aPKC) is a marker of PrE cells and that pharmacological inhibition of aPKC impairs the segregation of PrE and epiblast precursors. Furthermore, it affects the survival of PrE cells and can alter the subcellular localisation of the PrE transcription factor GATA4. These data indicate aPKC plays a central role for the sorting of the PrE and epiblast populations and links cell position within the embryo to PrE maturation and survival. Lastly, I have found that aPKC can directly phosphorylate GATA4 in vitro. Knockdown of GATA4 affects cell position within the embryo, whereas aPKC knockdown reduces the number of GATA4-positive cells. These results indicate GATA4 plays an important role in cell sorting during preimplantation development and suggest phosphorylation by aPKC could determine its presence in the nuclei of PrE cells. My work, in the light of the current knowledge, supports a model where the earliest cell fate decisions during mammalian development depend on cellular interactions and not on inherited cell fate determinants. This robust mode of development underlies the plasticity of the preimplantation embryo and ensures the formation of the first mammalian cell lineages, critical for any further progression in mammalian development.
568

Approches physiologique et moléculaire de la calcification chez le corail rouge de méditerranée Corallium rubrum / Molecular and physiological approaches to study calcification in the mediterranean red coral Corallium rubrum

Le Goff, Carine 14 December 2016 (has links)
Le processus de calcification chez Corallium rubrum conduit à la formation de deux structures squelettiques composées de CaCO3, l’axe squelettique et les sclérites, de taille et de forme différentes. Comme chez de nombreuses espèces calcifiantes, la calcification se fait sous contrôle biologique impliquant notamment des enzymes et des transporteurs ioniques. Une question centrale est d’identifier les mécanismes communs ou propres à chaque espèce qui sous-tendent leur convergence fonctionnelle envers ce processus. Deux approches ont été utilisées pour caractériser ces mécanismes chez C. rubrum: 1) Une approche physiologique avec le développement d’une technique de culture de microcolonies sur lamelles permettant d’observer différents stades de calcification, et de mesurer le pH aux sites de calcification par imagerie confocale ; 2) Une approche moléculaire afin de caractériser une famille d’enzymes, les anhydrases carboniques (ACs), qui jouent un rôle clef dans la calcification.Nous avons réalisé une cartographie du pH en effectuant des mesures dans différents compartiments intra- et extracellulaires. Nos résultats montrent notamment que le pH aux sites de calcification est supérieur à celui du milieu circulant dans les canaux gastrodermiques et non à celui l’eau de mer. Les mesures d’expression différentielle des ACs dans différents tissus mettent en évidence une isozyme préférentiellement exprimée dans les cellules calcifiantes.Ces résultats intégrés dans un contexte de calcification comparée pointent sur la convergence fonctionnelle des ACs et de la régulation du pH par les cellules calcifiantes, tout en soulignant des divergences évolutives. / The calcification process in Corallium rubrum leads to the formation of two skeletal structures made of calcium carbonate, the skeletal axis and sclerites, of different size and shape. As in many calcifying species, calcification occurs under a biological control that involves enzymes and ion transporters. A central issue is to determine the common and the species-specific mechanisms of calcification in order to identify functional convergences in this process. Two approaches were used to characterize these mechanisms in C. rubrum: 1) A physiological approach involving the development of a microcolony culture technique on glass coverslips, allowing the observation of the different stages of calcification, and the measurement of pH at the sites of calcification by the use of confocal microscopy; 2) A molecular approach to characterize an enzyme family, the carbonic anhydrases, which play a key role in calcification.We performed pH mapping by making measurements in different intra- and extracellular compartments. Our results show higher pH values at the sites of calcification compared with the fluid circulating in the gastrodermal canals, but not with the seawater surrounding the microcolony. Measurements of differential expression of carbonic anhydrases in different tissue fractions highlight an isozyme preferentially expressed in the calcifying cells.Within comparative calcification perspectives, these results point towards the functional convergence of carbonic anhydrases and pH regulation by the calcifying cells, while highlighting evolutionary divergences.
569

Comportement moteur induit visuellement et spontané chez la larve du poisson zèbre / Visually induced and spontaneous behavior in the zebrafish larva

Jouary, Adrien 09 October 2015 (has links)
Le comportement animal est souvent conçu comme résultant d'une association entre un stimulus et une réponse. Selon cette vision, comprendre le cerveau revient à dénouer les liens entre les entrées sensorielles et les sorties motrices. Toutefois, dans des conditions naturelles, l'influence entre l'action motrice et la perception sensorielle est réciproque. Les animaux utilisent constamment les rétroactions sensorielles causées par leurs actions pour ajuster les commandes motrices. Par ailleurs, le comportement n'est pas seulement une réponse à l'environnement sensoriel mais peut être généré par l'activité endogène du cerveau. Afin de comprendre le dialogue sensorimoteur en observant de larges régions cérébrales à une résolution cellulaire, j'ai étudié les comportements induits et spontanés chez la larve du poisson-zèbre. Les atouts de la larve du poisson zèbre sont sa petit taille et sa transparence. On peut utiliser des méthodes d'imagerie fonctionnelle optique, comme la microscopie par nappe laser, afin d'enregistrer l'activité dans une large portion des neurones. Afin d'étudier le comportement de navigation chez la larve dans des conditions compatibles avec l'observation du cerveau, j'ai développé un système de réalité virtuelle visuelle pour la larve du poisson zèbre. L'environnement visuel est mis à jour en fonction des mouvements du poisson. Cette rétroaction peut être choisie comme étant similaire à la rétroaction visuelle que le poisson expérimente en nage libre. En modifiant la rétroaction visuelle naturelle, on peut étudier la manière dont la larve s'adapte aux perturbations. Dans cette optique, j'ai d'abord généré une librairie de mouvements de nage libre. A partir de celle-ci, j'ai extrait la relation entre la trajectoire de la larve et la cinématique de ses mouvements de queue. Cette relation permet de décoder les intentions de déplacements chez une larve dont la tête est restreinte dans un gel et de mettre à jour un environnement visuel selon ses mouvements de queue. Dans un environnement virtuel, la larve parvient à contrôler son orientation et sa vitesse afin de suivre un mouvement d'ensemble ou bien à générer une séquence de mouvements nécessaires à atteindre une cible mobile. Lorsque la rétroaction visuelle n'est pas mise à jour continuellement mais à la fin de chaque mouvement, on observe que les mouvements sont alors plus longs. Cette faible perturbation réduit significativement le succès des déplacements du poisson vers des cibles virtuelles. Le comportement peut aussi résulter de l'activité endogène du cerveau. En absence de stimulus externe, la larve produit des mouvements stéréotypés similaires à ceux produits lorsqu'elle navigue en réponse à un stimulus. Après avoir établit une nouvelle méthode de classification des mouvements de queue, j'ai analysé la séquence des mouvements générés spontanément. Ces séquences sont composées de successions quasi rythmiques qui alternent avec de longues périodes de repos. Les mouvements consécutifs sont davantage similaires lorsqu'ils s’enchaînent rapidement (~10s). Afin d'étudier les mécanismes neuronaux responsables de la décision d'effectuer un mouvement spontané, j'ai couplé l’imagerie par nappe laser à l'analyse des mouvements. Des résultats préliminaires mettent en évidence des groupes de neurones dont l'activité prédit la direction des mouvements des virages. Deux groupes repartis bilatéralement oscillent en opposition de phase et l'état de cet oscillateur avant un mouvement prédit sa direction. Les neurones responsables de la décision du type de mouvement à effectuer spontanément sont différents des neurones qui contrôlent le timing de leur déclenchement. Ensemble, ces résultats éclairent les processus de rétroaction et de dynamique interne qui façonnent le comportement et ouvre la voie à l'étude de processus sensorimoteurs complexes dans des systèmes simples. / Behavior is often conceived as resulting from a stimulus-response association. Under this paradigm, understanding the nervous system is reduced to finding the relation between a sensory input and a motor output. Yet, in naturally behaving animals, motor actions influence sensory perceptions just as much as the other way around. Animals are continuously relying on sensory feedback to adjust motor commands. On the other hand, behavior is not only induced by the sensory environment, but can be generated by the brain's rich internal dynamics. My goal is to understand the sensory-motor dialogue by monitoring large brain regions, yet, with a single-neuron resolution. To tackle this question, I have used zebrafish larva to study visually induced and internally driven motor behaviors. Zebrafish larvae have a small and transparent body. These features enable using large-scale optical methods, such as selective plane illumination microscopy (SPIM), to record brain dynamics. In order to study goal-driven navigation in conditions compatible with imaging, I developed a visual virtual reality system for zebrafish larva. The visual feedback can be chosen to be similar to what the animal experiences in natural conditions. Alternatively, alteration of the visual feedback can be used to study how the brain adapts to perturbations. For this purpose, I first generated a library of free-swimming behaviors from which I learned the relationship between the trajectory of the larva and the shape of its tail. I then use this technique to infer the intended displacements of head-fixed larvae. The visual environment was updated accordingly. In the virtual environment, larvae were capable of maintaining the proper speed and orientation in the presence of whole-field motion and produced fine changes in orientation and position required to capture virtual preys. I demonstrate the sensitivity of larvae to visual feedback by updating the visual world only after the discrete swimming episodes. This feedback perturbation induced a decay in the performance of prey capture behavior, suggesting that larva rely on real-time visual feedback during swimming. Behavior can also be induced by the internal dynamics of the brain. In the absence of salient sensory cues, zebrafish larva spontaneously produces stereotypical tail movements, similar to those produced during goal-driven navigation. After having developed a new method to classify tail movements, I analyzed the sequence of spontaneously generated tail movements. The latter switched between period of quasi-rhythmic activity and long episodes of rest. Moreover, consecutive movements were more similar when executed at short time intervals (~10s). In order to study the mechanisms responsible for the spontaneous decisions to move, I coupled SPIM to tail movement analysis. Using dimensionality reduction, I identified clusters of neurons predicting the direction of spontaneous turn movements but not their timings. This Preliminary result suggests that distinct pathways could be responsible for the timing (when) and the selection (what) of spontaneous actions. Together, the results shed light on the role of feedback and internal dynamics in shaping behaviors and open the avenue for investigating complex sensorimotor process in simple systems.
570

Origine(s) du système nerveux des Métazoaires et évolution des mécanismes liés au contrôle de la prolifération cellulaire : apports de l'étude chez un Cténaire et un Cnidaire / Challenging the scenrairos of metazoan emergence of nervous system and evolution of mechanisms regulating cell proliferation : new insights from the studies of a cnidarian and a ctenophore

Coste, Alicia 10 November 2015 (has links)
Les Cnidaires et les Cténaires sont deux embranchements extérieurs aux Bilatériens qui, de par leur position phylogénétique, constituent des modèles d'étude cruciaux pour comprendre l'origine et l'évolution de mécanismes moléculaires ou encore de types cellulaires à grande échelle chez les Métazoaires. Ils sont les deux seuls embranchements non-Bilatériens à posséder des cellules nerveuses ainsi que des cellules musculaires. La première partie de mon travail de thèse s'inscrit dans le contexte de la compréhension de l'origine du système nerveux des Métazoaires. Des études récentes suggèrent une origine double du système nerveux ; ainsi celui des Cténaires aurait été acquis de manière convergente par rapport à celui des Cnidaires et des Bilatériens. Cela repose sur des données récentes de phylogénomique proposant les Cténaires en tant que groupe-frère de tous les autres Métazoaires et sur l'absence supposée chez les Cténaires de quasiment tous les systèmes de neurotransmission connus y compris le système cholinergique. A l'encontre de ces hypothèses, j'ai pu mettre en évidence l'existence d'un système cholinergique chez le Cténaire Pleurobrachia pileus ainsi que son étroite association avec le système nerveux. Cette conclusion repose sur une multiplicité d'approches à l'échelle moléculaire (analyses d'orthologie, immunolocalisation, hybridations in situ), cellulaire (imagerie calcique) et de l'organisme (approche pharmacologique). Dans la seconde partie de ma thèse, j'aborde la question de la conservation des mécanismes moléculaires impliqués dans le contrôle de la prolifération cellulaire à l'échelle des Métazoaires. J'ai pu mettre en évidence la conservation des acteurs. / Due to their phylogenetic position outside from Bilateria, cnidarians and ctenophores are key phyla to understanding the origin and early evolution of molecular mechanisms, cell types, or body plan features at the level of Metazoa. Unlike other non-bilaterian phyla (sponges and placozoans), they possess neurons and muscle cells. The first part of my work relates to the problem of the origin of the metazoan nervous system. Recent studies have suggested a dual origin for nerve cells, with ctenophore neurons having emerged independently from those of cnidarians and bilaterians. This hypothesis relies on phylogenomic analyses supporting ctenophores as sister-group to all other metazoans, and on the purported absence in ctenophores of almost all well-known neuro-transmission systems, including the cholinergic system. Refuting this claim, I present substantial evidence in favour of acetylcholine (Ach) being used in the ctenophore Pleurobrachia pileus as an extra-cellular messenger, including within the nervous system. This conclusion arises from the conjunction of multiple approaches at the molecular scale (orthology analyses, Ach immuno-localisation, gene in situ hybridisation), at the cellular scale (calcium imaging on muscle cells exposed to Ach) and at the organism scale (pharmacological treatments with an Ach analogue and Ach antagonists). In the second part of my thesis, I address the conservation of molecular mechanisms involved in the control of cellular proliferation. Notably, the Hippo pathway is known for its role in bilaterians in the negative control of cellular proliferation. I show that components of this pathway are conserved in Pleurobrachia pileus and in Clytia hemisphaerica and that the nuclear vs. cytoplasmic localisation of the transcriptional co-factor Yorkie is correlated to the extent of proliferation within C. hemisphaerica tissues. Finally, RNAseq differential gene expression analyses along a cellular conveyor belt of the C. hemisphaerica medusa suggests a tendency for conservation of function among a set of genes whose mammalian orthologues have documented roles in the arrest of cellular proliferation.

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