Theses (Ph. D.)--Marshall University, 2007. / Title from document title page. Includes abstract. Document formatted into pages: contains xiii, 124 pages including illustrations. Includes vitae. Bibliographical references at the end of Chapters 1-3.

Universiẗat, Diss., 2003--Bonn.

Thesis (Ph.D.) - University of Queensland, 2007. / Includes bibliography.

Recently there has been interest in determining what happens to the human brain during a traumatic brain injury (TBI). The blast wave created by explosive devices, such as landmines, is one of the most common causes of TBI. The purpose of this study is to investigate the link between an explosion and a cells reaction to a blast wave on a time scale of a few hours. Three different types of cells were tested by pressure waves exposure, fibroblasts (3T3), epithelial cervical cancer (HeLa), and canine epithelial kidney cells (MDCK). Fluorescent images of the cells before and after pressure wave exposure were used to determine how much damage cells have suffered. 3T3 cells showed the most cellular modification while HeLa and MDCK were more resilient. A simple scaling model is proposed to relate the cellular modification to the shock strength.

Infectious disease remains one of the leading causes of morbidity and mortality worldwide. Many bacteria that cause disease have the capacity to enter into eukaryotic cells such as epithelial cells and tissue macrophages. Gaining access into the intracellular environment is one of the most critical steps in their survival and/or in pathogenesis. The entry mechanisms employed by these organisms vary considerably, but most mechanisms involve sabotaging and manipulating host cell functions. Invasion of epithelial cells involves triggering host signal transduction mechanisms to induce cytoskeleton rearrangement, thereby facilitating bacterial uptake. My work focuses on understanding the molecular mechanisms employed by bacterial pathogen Listeria monocytogenes and Chlamydia trachomatis to gain access into the host cells in order to cause the disease. In first part of my thesis I investigated the mechanism of Listeria monocytogenes entry. Listeria, a facultative intracellular organism, is responsible for causing meningitis, septicemia, gastroenteritis and abortions. Critical for Listeria virulence is its ability to get internalized, replicates and spread into adjacent host cells. One of the pathways of Listeria internalization into mammalian cells is promoted by binding of its surface protein Internalin B (InlB) to host receptor MET. Studies done in the past demonstrated a critical role of host type IA Phosphoinositide (PI) 3-kinase in controlling cytoskeleton rearrangement and entry of Listeria downstream of MET. An important unresolved question was how activation of PI3K results in cytoskeleton rearrangements that promote Listeria entry. In this work, we identified 9 host signaling molecules, that iv includes Rab 5c, SWAP 70, GIT1, PDK1, mTor, ARAP2, ARNO, DAPP1 & PKC-δ, acting downstream of type IA Phosphoinositide (PI) 3-kinase to regulate changes in host cytoskeleton to cause Listeria entry. Second part of my thesis involved studying the functions of chlamydial effector protein Tarp in its invasion. Infection caused by Chlamydia Trachomatis is the most common sexually transmitted disease resulting in uro-genital diseases, LGV, ectopic pregnancy and infertility. It is also responsible for causing trachoma, the leading cause of preventable blindness in third world countries. Being an obligate intracellular pathogen, gaining access into intracellular environment is the most critical step in lifecycle and pathogenesis of Chlamydia. Previous studies demonstrate the role of both chlamydial and host actin nucleators, Tarp and Arp2/3 complex respectively, in mediating Chlamydial entry into non-phagocytic cells. But the molecular details of these processes were not well understood. In this study, we demonstrate novel function of Tarp protein to form actin bundles by its ability to bind filamentous actin through newly identified FAB domains. And we also provide bio-chemical evidence that Tarp and Arp2/3 complex works in conjunction to cause changes in host cytoskeleton that effectively culminate into bacterial uptake by host cells. Overall, this research was a significant step in enhancing our understanding, at a molecular level, to pathogenesis of infections caused by Listeria monocytogenes and Chlamydia trachomatis

Myogenic differentiation of muscle cells in culture is characterized by changes in morphology and in pattern of gene expression. When the myoblasts in culture are induced to diffrentiate either by cell to cell contact or by serum-starvation, a vast array of muscle tissue-specific genes including α-actin, are activated and is accompanied by a concomitant down-regulation of non-muscle genes such as, β- and γ-actins, tubulins etc.. The coordinate activation of muscle-specific genes is suggested to be mediated by cis-acting regulatory sequences in the muscle gene-promoters and muscle-tissue-specific DNA-binding proteins belonging to the MyoD class of regulators. But the mechanism behind the repression of non-muscle gene expression during differentiation has not yet been well understood. To date, no consensus has been achieved on the mechanism governing the down-regulation of β- actin gene, and no information is available on the regulation of -y-actin gene during muscle differentiation. The results from the present study showed that during differentiation of BC^3H1 cells the β- and γ-actins genes were down-regulated to ≈25% of their initial levels in undifferentiated cells. Measurement of half-life during differentiation indicated that the half-lives of both β- and γ-actins decreased to ≈25% of their original levels in myoblasts. These results suggest that changes in mRNA stability play an important role in the down-regulation of non-muscle actin genes. Second messengers and oncogenes are known to block the differentiation program of muscle cells. In the present study cAMP and ElA were observed to inhibit the down-regulation of β- and γ-actin genes in BC^3H1 cells. In both cAMP-and E1A- treated cells the β- and γ-actin mRNAs were found to have a higher half-life than the untreated differentiated BC^3H1 cells. This observation also suggests that mRNA stability might play an important role in the regulation of β- and γ-actin gene expression. The muscle-specific α-actin is activated by cell-cell contact and serum-starvation. Results in the present study suggested that cAMP was able to inhibit the activation of α-actin expression mediated by serum-starvation while it had no significant effect on the signal mediated by cell-cell contact. It is hypothesized that the two signals mediating a-actin activation might follow different intracellular signalling pathways. The effects of cAMP and E1A on the expression of muscle-specific and non-muscle actins could be a direct primary event or might be an indirect secondary event, mediated by other intracellular factors such as myogenin. The results showed that cAMP did not block the transcription of the myogenin while secondary evidences suggested that cAMP might negatively-regulate myogenin at a point downstream of transcription. E1A was observed to block the expression of myogenin gene suggesting that E1A might be mediating its effect through myogenin. Because the muscle-specific(α) and non-muscle(β- and γ-) isoforms were expressed both in the presence and in the absence of myogenin, myogenin's role in the regulation of actin genes is unclear. / Thesis / Master of Science (MS)

While there have been many recently developed Elastic Network Models (ENM) to calculate the fluctuation dynamics of proteins, e.g., Gaussian Network Model (GNM), Anisotropic Network Model (ANM), Distance Network Model (DNM), the concept of loading these models to study the molecular mechanics and constitutive behavior of structural proteins has remained relatively untouched, until very recently. This work entails using the ANM as the framework for developing a finite element model of a 9–monomer strand of actin. Critical input parameters to the model, such as the cutoff radius, r[subscript c], and spring constant, k, are generated by matching the all-atom steered molecular dynamics (SMD) residue displacements to that of the ANM. The parameters yielding the best match between the SMD and structural ENM (SENM) simulations will then be input into the finite element model (FEM) for a more in depth analysis. The finite element model incorporates a 9–monomer strand of actin. The F–actin strand is subjected axial and torsional loads comparable to those seen in vivo. Key areas of interest in the protein are examined, such as the nucleotide binding pocket (NBP) and the DNase I binding loop, to demonstrate how loading affects the protein’s conformation. Local residue displacements are tracked in an effort to garner a better understanding of how various loads are transmitted through F–actin during key events. Insights and conclusions are discussed along with the implications of this work. / text

Actin-based cell motility plays crucial role throughout the lifetime of an organism. While the dendritic nucleation model explains the initiation and organization of the actin network in lamellipodia, two questions need to be answered. In this study, I reconstructed cellular motility in vitro to investigate how actin filaments are organized to coordinate elongation and attachment to leading edge. Using total internal reflection fluorescence microscopy of actin filaments, we tested how profilin, Arp2/3, and capping protein (CP) function together to propel beads or thin glass nanofibers coated with N-WASP WCA domains. During sustained motility, physiological concentrations of Mg²⁺ generated actin filament bundles that processively attached to the nanofiber. Reduction of total Mg²⁺ abolished particle motility and actin attachment to the particle surface without affecting actin polymerization, Arp2/3 nucleation, filament capping, or actin shell formation. Addition of other types of crosslinkers restored both comet tail attachment and particle motility. We propose a model in which polycation-induced filament bundling sustains processive barbed end attachment to the leading edge. I lowered actin, profilin, Arp2/3, and CP concentrations to address the generation of actin filament orientation during the initiation of motility. In the absence of CP, Arp2/3 nucleates barbed ends that grow away from the nanofiber surface and branches remain stably attached to nanofiber. CP addition causes shedding of short branches and barbed end capture by the nanofiber. Barbed end retention by nanofibers is coupled with capping, indicating that WWCA and CP bind simultaneously to barbed ends. In pull-down assays, saturating CP addition only blocks WWCA binding to barbed end by half. Labeled WWCA bound to barbed ends with an affinity of 14 pM and unlabeled WWCA with an affinity of 75 pM. CP addition increased WWCA binding slightly at low CP concentrations and decreased WWCA binding to 50% at high CP concentrations. Molecular models of CP and WH2 domains bound respectively to the terminal and penultimate actin subunit showed no overlap and that CP orientation might blocks WWCA dissociation from the penultimate subunit. Simultaneous binding of CP and WWCA to barbed ends is essential to the establishment of filament orientation at the leading edge. / Ph. D.

Die Anpassung des Aktinzytoskeletts an extrazelluläre Gewebsstrukturen ist Voraussetzung für die Interaktion mit der extrazellulären Matrix und für die Zellbewegung, einschließlich der Invasion und Metastasierung von Tumorzellen. Wir untersuchten bei invasiven B16/F1 GFP-Aktin Mausmelanomzellen, ob und wie sich Zellform, Art und Effizienz der Bewegung an physikalisch unterschiedlich beschaffene kollagenöse Umgebungen anpassen: 1) mit Kollagen-Monomeren beschichtete 2D Objektträger, 2) 2D Oberfläche einer fibrillären Kollagenmatrix und 3) Zellen, die in einer 3D Kollagenmatrix eingebettet waren. Zur Darstellung des Aktinzytoskeletts wurden Zellen eingesetzt, die GFP-Aktin Fusionsprotein exprimierten, und mittels Zeitraffer-Videomikroskopie und Konfokalmikroskopie untersucht. Im direkten Vergleich waren Struktur und Dynamik des Aktinzytoskelett wie auch Zellform und Art der Migration unterschiedlich in den verschiedenen Umgebungen. Auf 2D planer Oberfläche erfolgte eine rasche Adhäsion und Abflachung der Zellen (Spreading) mit nachfolgender Migration mit Bildung fokaler Adhäsionszonen, in die kabelartige Aktinstrukturen (Stress fibers) einstrahlten. Dagegen entwickelte sich in 3D Kollagenmatrices eine spindelförmige, fibroblastenähnliche Zellform (mesenchymal) mit zylindrischen fingerförmigen vorderen Pseudopodien, die Zug der Zelle nach vorne bewirken und hochdynamisches polymeres Aktin, nicht jedoch Stress Fibers enthielten. Eine ähnliche Zellform und Struktur des Zytoskeletts entwickelte sich in Zellen auf 2D fibrillärem Kollagen. Die Kontaktfindung und Migrationseffizienz auf oder in fibrillären Matrices war im Vergleich zu 2D kollagenbeschichteter Oberfläche erschwert, die Migrationseffizienz verringert. In Kontrollversuchen wurden Migration und polarisierte Bildung von Aktindynamik durch Inhibitoren des Aktinzytoskeletts (Cytochalasin D, Latrunculin B, Jasplakinolide) stark gehemmt. Diese Befunde zeigen , dass die Struktur und Dynamik des Aktinzytoskeletts sowie die Art der Migration in Tumorzellen stärker als bisher angenommen durch die umgebende Kollagenstruktur bestimmt wird. Während 3D Kollagenmatrices in vivo ähnliche bipolare Zytoskelettstruktur fördern, müssen Abflachung der Zellen mit Bildung von Stress Fibers als spezifische Charakteristika von 2D Modellen angesehen werden. / The dynamics and the adaptation of the actin cytoskeleton in response to extracellular matrix structures is the prerequisite for cell polarisation, shape change, and migration, including the invasion and metastasis of tumor cells. In invasive B16-mouse melanoma cells expressing GFP-actin fusion protein we directly imaged cytoskeletal dynamics, adaptation and movement in response to physically different collagen substrata using time-lapse videomicroscopy and confocal microscopy: 1) cells on 2D surfaces coated with monomeric collagen, 2) 2D surfaces composed of fibrilliar collagen, and 3) cells which were embedded in 3D collagen matrices. In directly comparision the structure and dynamic of the actin cytoskeleton, cell shape and migration efficiency were different between the different collagen substrata. On 2D monomeric collagen quick cell adhesion, spreading, and cell flattening were followed by migration driven by focal contacts in which cable like actin structures (stress fibres) inserted. In 3D collagen matrices however, cells developed a spindle like (mesenchymal) shape with cylindrical finger-like pseudopods which generated the forward-driving force towards collagen fibres. These pseudopods contained dynamic polymerized actin yet lacked stress fibres. A similar mesenchymal cell shape and structure of the actin cytosceleton that lacked stringent focal contacts and stress fibres developed on 2D fibrilliar collagen matrices. The migration efficiency in 3D collagen was significantly lower, compared to 2D substrata, suggesting an impact of matrix barriers on the migration velocity. Both, actin polymerization and migration were severely impaired by inhibitors of the actin cytoskeleton (Cytochalasin D, Latrunculin B, Jasplakinolide), causing cell rounding and oscillatory “running on the spot”. These findings show the dynamics of the actin cytoskeleton in living melanoma cells critically dependent on and respond to the physical structure of the ECM. 3D collagen matrices hence favour in vivo-like cell shape and cytoskeletal organization while flat cell spreading and formation of stress fibres are specific cell characteristics of cells on 2D.

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