Animal group formation has often been studied by mathematical biologists through PDE models, producing classical results like traveling and stationary waves. Recently, Eftimie et al. introduced a 1-D PDE model that considers three social interactions between individuals in the relevant neighborhoods, specifically re- pulsion, alignment, and attraction. It takes into account the orientation of the neighbors when consider- ing if they can communicate. This has resulted in exciting new movement behaviors like zig-zag pulses, breathers, and feathers. In this work, we translate the Eftimie model into a Lagrangian implementation. Currently, the results from the Lagrangian formulations show many of the results displayed by Eftimie’s original PDE model, producing patterns like the zig-zag, breather traveling, and stationary pulses. In addi- tion, we model animal movement with an ODE approach to complete the investigation regarding the role of direction-dependent communication mechanism in discrete-space. / Applied Mathematics

No description available.

As land-use change threatens wildlife viability, the understanding of how animals move through spatially fragmented landscapes has important implications for the long-term persistence and management of species. This research compares moose movement and space-use patterns between Algonquin Provincial Park (20 moose) and Wildlife Management Unit 49 (17 moose) in southern Ontario from 2006 to 2008. Moose were found to be using areas in the home range that are not normally used more often in the park relative to the management unit, and that there are signs, although not significant, that the use of land covers between the two locations may be diverging. These differences are likely driven by the differences in predator and road densities between the two locations. I interpret these findings to suggest that Algonquin Provincial Park is protecting moose from the impacts of roads, but that moose can survive in the road-fragmented landscapes if there is enough habitat available.

As land-use change threatens wildlife viability, the understanding of how animals move through spatially fragmented landscapes has important implications for the long-term persistence and management of species. This research compares moose movement and space-use patterns between Algonquin Provincial Park (20 moose) and Wildlife Management Unit 49 (17 moose) in southern Ontario from 2006 to 2008. Moose were found to be using areas in the home range that are not normally used more often in the park relative to the management unit, and that there are signs, although not significant, that the use of land covers between the two locations may be diverging. These differences are likely driven by the differences in predator and road densities between the two locations. I interpret these findings to suggest that Algonquin Provincial Park is protecting moose from the impacts of roads, but that moose can survive in the road-fragmented landscapes if there is enough habitat available.

<p>The ultimate goal of wildlife recovery is abundance growth of a species, though it must also involve the reestablishment of the species’ ecological role within ecosystems frequently modified by humans. Reestablishment and subsequent recovery may depend on the species’ degree of adaptive behavior as well as the duration of their functional absence and the extent of ecosystem alteration. In cases of long extirpations or extensive alteration, successful reestablishment may entail adjusting foraging behavior, targeting new prey species, and encountering unfamiliar predatory or competitive regimes. Recovering species must also increasingly tolerate heightened anthropogenic presence, particularly within densely inhabited coastal zones. In recent decades, gray seals (Halichoerus grypus) recovered from exploitation, depletion, and partial extirpation in the Northwest Atlantic. On Cape Cod, MA, USA, gray seals have reestablished growing breeding colonies and seasonally interact with migratory white sharks (Carcarodon carcharias). Though well-studied in portions of their range due to concerns over piscivorous impacts on valuable groundfish, there are broad knowledge gaps regarding their ecological role to US marine ecosystems. Furthermore, there are few studies that explicitly analyze gray seal behavior under direct risk of documented shark predation. </p><p> In this dissertation, I apply a behavioral and movement ecology approach to telemetry data to understand gray seal abundance and activity patterns along the coast of Cape Cod. This coastal focus complements extensive research documenting and describing offshore movement and foraging behavior and allows me to address questions about movement decisions and risk allocation. Using beach counts of seals visible in satellite imagery, I estimate the total regional abundance of gray seals using correction factors from haul out behavior and demonstrate a sizeable prey base of gray seals locally. Analyzing intra-annual space use patterns, I document small, concentrated home ranges utilizing nearshore habitats that rapidly expand with shifting activity budgets to target disperse offshore habitats following seasonal declines in white sharks. During the season of dense shark presence, seals conducted abbreviated nocturnal foraging trips structured temporally around divergent use of crepuscular periods. The timing of coastal behavior with different levels of twilight indicate risk allocation patterns with diel cycles of empirical white shark activity. The emergence of risk allocation to explain unique behavioral and spatial patterns observed in these gray seals points to the importance of the restored predator-prey dynamic in gray seal behavior along Cape Cod.</p> / Dissertation

A glicose é considerada o combustível mais importante para a manutenção das atividades de diversos tecidos corporais. O fígado é um órgão chave na manutenção da homeostase da glicose e para que isto ocorra é necessária a presença de hormônios, tais como a insulina que pode desempenhar sua função agindo tanto em nível periférico como centralmente. Além disso, estudos demonstram que o sistema nervoso autônomo (SNA) desempenha uma função extremamente importante no controle da glicemia. Sendo assim, o objetivo deste trabalho foi avaliar o efeito da insulina injetada no sistema nervoso central sobre a produção hepática de glicose (PHG), além de verificar o papel do SNA na modulação dessa variável em ratos livres de anestesia. Para isto, utilizamos um modelo animal de hiperatividade simpática, (SHR) e seu controle (Wistar). Antecedendo todos os experimentos, os animais foram mantidos em privação alimentar por um período de 12 h. A insulina e/ou insulina denaturada (controle-veículo) foi injetada no ventrículo lateral (VL) cerebral (100hU/ml) e a PHG, PAM e FC foram monitorados aos 2, 5, 10, 20 e 30 min. subsequentes. No grupo Wistar observamos uma queda máxima na PHG aos 10 min. após a microinjeção de insulina no VL (81,4 mg/dL) quando comparados ao seu valor basal antes da insulina (110mg/dL) e ao grupo controle (insulina denaturada) no mesmo decurso temporal (117,5 mg/dL). Em outro grupo experimental verificamos que o antagonismo periférico dos receptores muscarínicos (metil-atropina, 2mg/Kg, i.v.) foi capaz de bloquear a queda na PHG decorrente da ação central da insulina no mesmo decurso temporal (92mg/dL aos 10\' vs 88mg/dL no basal). Por outro lado, o antagonismo periférico dos receptores adrenérgicos (fentolamina, 3mg/Kg e propranolol, 0,5mg/Kg, i.v., respectivamente) não afetou a queda da PHG após administração da insulina no VL. No grupo SHR a insulina injetada no VL não promoveu alterações na PHG nos tempos avaliados. A PAM e FC não sofreram qualquer alteração após a injeção central de insulina em ambas as linhagens de animais. Para avaliar a função do SNA sobre a PHG basal independente da ação central da insulina de ambas as linhagens realizamos o antagonismo periférico dos receptores adrenérgicos e muscarínicos e a PHG foi monitorada aos 2, 5, 10, 20, 30, 40, 50 e 60 min. subsequentes. Os resultados mostraram que o bloqueio adrenérgico diminuiu a PHG com maior queda aos 40 min. tanto nos animais Wistar (79 mg/dL; -25%) quanto nos SHR (93 mg/dL; -22%) em relação ao basal (Wistar: 106 mg/dL e SHR: 118 mg/dL). O bloqueio periférico dos receptores muscarínicos não alterou a PHG em ambas as linhagens. O conjunto dos resultados obtidos nos leva a concluir que, durante uma situação de jejum prolongado, a alça parassimpática do SNA é a principal responsável pela rápida queda na PHG causada pela ação central da insulina em animais Wistar. Por outro lado, o sistema autonômo simpático desempenha maior influência tônica no controle da PHG basal do que a alça parassimpática, independente da ação central da insulina tanto em SHR quanto em Wistar. / Glucose is considered the most important fuel for the maintenance activities of the tissues. The liver is a key organ in maintaining glucose homeostasis and for this, requires the presence of hormones such as insulin that can perform its function by acting both peripherally and centrally. In addition, studies show that the autonomic nervous system (ANS) plays an extremely important role in glucose control. Therefore, the aim of this study was to evaluate the effect of insulin injected into the central nervous system on hepatic glucose production (HGP), and verifies the role of ANS in the modulation of this variable in conscious rats. For this, we used an animal model of sympathetic hyperactivity (SHR) and its control (Wistar). Preceding all experiments, the animals were kept in starvation for a period of 12 h. Insulin and / or denatured insulin (control vehicle) was injected into the lateral ventricle (LV) of the brain (100hU/ml) and HGP, MAP and HR were monitored at 2, 5, 10, 20 and 30 min. In the Wistar group we observed a maximal drop in PHG 10 min after microinjection of insulin in the VL (81.4 mg / dL) compared to baseline before insulin (110mg/dl) and the control group (insulin denatured) in the same time course (117.5 mg / dL). In another experimental group we found that antagonism of peripheral muscarinic receptors (methyl-atropine 2mg/kg, iv) was able to block the fall in HGP resulting from the action of insulin at the same time course (92mg/dL to 10\' vs 88mg / dL at baseline). On the other hand, the antagonism of peripheral adrenergic receptors (Phentolamine and propranolol 3mg/kg, 0.5 mg / kg, iv, respectively) did not affect the fall of HGP after administration of insulin in the VL. In the SHR group insulin injected into the VL did not promote changes in HGP in the times studied. The MAP and HR did not change after the central injection of insulin in both strains of animals. To evaluate the role of ANS on the baseline HGP independent of central action of insulin in both strains we performed the peripheral antagonism of adrenergic and muscarinic receptors and HGP was monitored at 2, 5, 10, 20, 30, 40, 50 and 60 min. The results showed that the adrenergic blockade reduced the HGP with a greater decrease at 40 min. both in Wistar (79 mg / dL, -25%) and in SHR (93 mg / dL, -22%) compared to baseline (Wistar: 106 mg / dL and SHR: 118 mg / dL). The blockade of peripheral muscarinic receptors did not alter the PHG in both strains. The set of results leads us to conclude that during starvation, the handle of the parasympathetic ANS is primarily responsible for the rapid drop in HGP caused by central action of insulin in Wistar. On the other hand, the autonomic sympathetic system plays a greater influence on the tonic baseline control of HGP than the parasympathetic system, independent of the central action of insulin in both SHR and Wistar.

Distance sampling and spatial capture-recapture are statistical methods to estimate the number of animals in a wild population based on encounters between these animals and scientific detectors. Both methods estimate the probability an animal is detected during a survey, but do not explicitly model animal movement. The primary challenge is that animal movement in these surveys is unobserved; one must average over all possible paths each animal could have travelled during the survey. In this thesis, a general statistical model, with distance sampling and spatial capture-recapture as special cases, is presented that explicitly incorporates animal movement. An efficient algorithm to integrate over all possible movement paths, based on quadrature and hidden Markov modelling, is given to overcome the computational obstacles. For distance sampling, simulation studies and case studies show that incorporating animal movement can reduce the bias in estimated abundance found in conventional models and expand application of distance sampling to surveys that violate the assumption of no animal movement. For spatial capture-recapture, continuous-time encounter records are used to make detailed inference on where animals spend their time during the survey. In surveys conducted in discrete occasions, maximum likelihood models that allow for mobile activity centres are presented to account for transience, dispersal, and heterogeneous space use. These methods provide an alternative when animal movement causes bias in standard methods and the opportunity to gain richer inference on how animals move, where they spend their time, and how they interact.

Uma análise da rede de movimentação de bovinos entre estabelecimentos do Estado de Mato Grosso foi realizada utilizando os dados das guias de trânsito animal (GTA) emitidas durante o ano de 2007. A utilização de parâmetros descritivos da rede de movimentação de bovinos permitiu a caracterização da intensidade de comercialização de bovinos entre os estabelecimentos. Os parâmetros calculados foram: grau (entrada e saída), betweenness, closeness, coeficiente de aglomeração e PageRank. Dados referentes ao status das propriedades (foco ou livre de brucelose) obtidos do banco de dados do levantamento para brucelose bovina do Programa Nacional de Controle e Erradicação da Brucelose e da Tuberculose Animal (PNCEBT) foram utilizados para comparar os parâmetros das propriedades positivas e negativas para brucelose. A comparação foi realizada pelo teste de Mann Whitney e foi encontrada diferença estatisticamente significante (P< 0,05) apenas para os parâmetros grau total e de saída ponderados por número de animais e ponderados por número de lotes movimentados. A análise descritiva da rede de movimentação de bovinos mostra que a distribuição de valores para todos os parâmetros, exceto o closeness, seguiu qualitativamente a Lei de potências. As informações obtidas são importantes para auxiliar em medidas de controle e prevenção de doenças em rebanhos bovinos, como a brucelose. / An analysis of the network of cattle movement between farm premises of the state of Mato Grosso was carried out using data from the records of animal transit (GTA) collected during 2007. The use of descriptive parameters of the network of movement allowed the characterization of the intensity of bovine trade between the farm premises. The parameters calculated were: degree (incoming and outgoing), betweenness, closeness, clustering coefficient and PageRank. The database concerning the status of the premises (positive or brucellosis free) obtained from the survey for bovine brucellosis of National Programme for Control and Eradication of Brucellosis and Tuberculosis Animal (PNCEBT) was used to compare the parameters of positive and negative premises for brucellosis. The comparison was done by using the Mann Whitney test and found a statistically significant difference (P <0.05) for the parameters total degree and outgoing degree weighted by number of animals and number of batches. The descriptive analysis of the network of bovine movements showed that the distribution of values for all parameters, except the closeness, qualitatively followed a power law. The information obtained is important to assist in control measures and prevention of diseases in cattle herds, such as brucellosis.

Groupers (Epinephelidae: Epinephelinae) are apex predators within many reef communities worldwide. Grouper landings contribute significantly to global fisheries, and many populations are suffering from unsustainable levels of exploitation. The large size, site specificity and catchability of most groupers increase susceptibility to fishing pressure, and a large number of grouper species throughout the world are currently overfished. Multiple species are listed as endangered or threatened, and many have suffered local extirpations across their range. Removal of these upper level predators can significantly alter community structure and result in second order effects that may have critical ecological implications. The economic and ecological value of groupers is significant, and data regarding the abundance, habitat and behavior of these exploited species are necessary in order to implement realistic and effective management strategies. Atlantic Goliath Grouper (Epinephelus itajara) historically occurred in tropical and subtropical waters from the west coast of Africa to the east coast of Florida, south to Brazil, and throughout the Caribbean Sea and Gulf of Mexico. As one of the world's largest groupers, individuals are known to reach at least 37 years of age, and may grow to sizes exceeding 2.5 meters and 400 kilograms. The life history and behavioral characteristics of this species amplify vulnerability to exploitation, and Atlantic Goliath Grouper harvest was banned in U.S. waters in 1990 after a noted sharp decline in population numbers. The species has responded encouragingly to protective measures; however, the population's recovery and present status with U.S. waters should be thoroughly evaluated before altering regulatory guidelines. Traditional fishery-dependent data are not available (i.e., landings data); thus estimates of population demographics and recovery are dependent upon directed, fishery independent research efforts. It was the goal of this project to provide information regarding demographics, movement patterns, effects of catch and release angling, and feeding behavior of Atlantic Goliath Grouper within the central eastern Gulf of Mexico. The majority of research involving Atlantic Goliath Grouper began after the stock was already overfished, resulting in the absence of an existing "baseline" with which to compare current population parameters. Replication of visual surveys over a range of depths and habitat types provided an index of abundance for specific sites, and allowed for quantification of the size distribution of individuals. Atlantic Goliath Grouper were most abundant at high relief, high volume artificial reefs within the study area, and the majority of individuals observed were 80 - 160 cm in total length. Knowledge of fish movement, behavior and habitat associations has been used to exploit many species of fish; thus, this knowledge is critical for the creation of regulatory guidelines regarding conservation. Protection from harvest does not immediately imply that fishing mortality is negligible. As opportunistic ambush predators, Atlantic Goliath Grouper are relatively easy to catch on hook and line, and the species is often targeted for sport or caught incidentally during angling efforts for other reef fish species. Acoustic tracking allowed for continuous monitoring of individuals for several years after catch and release events. Barotrauma severity increased with capture depth, but immediate mortality was not observed during this study. Additionally, the length of total monitoring period was not affected by the severity of barotrauma, which suggests that with proper handling, Atlantic Goliath Grouper are not subject to high levels of release mortality in the study area (at depths < 40 m). However, strong site fidelity of Atlantic Goliath Grouper to artificial reefs increases susceptibility to fishing pressure and amplifies interactions with anglers, so the chronic effects of repeated capture remain unclear. Description and quantification of goliath grouper feeding behavior may allow for innovative suggestions to decrease the probability of catch and release mortality, and potentially offer new tactics to reduce opportunistic predation upon hooked fish. Kinematic analysis of Atlantic Goliath Grouper feeding sequences demonstrated that they are capable of modulating feeding behavior based upon prey activity level and position within the water column. Individuals exhibited larger maximum gapes and more rapid feeding sequences when presented with mobile live food. Immobile (dead) food was primarily consumed through suction, and strikes upon these items were characterized by slower, closer approaches, smaller maximum gapes and longer bite durations. It is hopeful that the information presented herein will provide insight regarding the ecology of Atlantic Goliath Grouper and can be applied to future management efforts involving this protected species.

<p>To conserve biodiversity, it is critical to understand the dynamic landscapes and climates through which species move and how the environment influences movement choices. In particular, I am interested in how species respond to human modifications to landscapes and climates. Chapter 1 uses datasets on the spatial and temporal coverage of remotely sensed land cover datasets to examine gaps in the monitoring of environmental priorities. Temporal gaps in Landsat and spatial gaps in commercial high resolution satellites such as QuickBird may hinder land cover change monitoring efforts.</p><p>Chapter 2 uses Global Climate Models and museum specimens to projects the impact of climate change on the flora of California, a global biodiversity hotspot. With anticipated climate change, up to 66% may experience >80% reductions in range size within a century. These projections are less severe if plants are able to disperse in time. With no constraints on dispersal, plant centroids move an average of up to 150 km. The projections identify regions where species undergoing severe range reductions may persist. Protecting these potential future refugia and facilitating species dispersal may be essential to maintain biodiversity in the face of climate change.</p><p>Chapter 3 analyzes the movements of 73 elephants fitted with GPS collars against 4 remotely sensed datasets spanning a strong rainfall gradient across 7 southern African countries. Movements show strong seasonal and geographic differences across the study area. Two major human interventions, artificial water and fences, distort these movement patterns by increasing dry season ranging patterns and increasing the density of wet season movements.</p><p>Chapter 4 uses the datasets described in chapter 3 to explore elephant vegetation preferences. Elephants consistently prefer greener vegetation throughout the year. Vegetation preferences vary seasonally. Elephants prefer less variable vegetation such as forests in the dry season and ephemeral vegetation such as grasslands in the wet season.</p><p>Chapter 5 uses telemetry and remotely sensed landcover data to ask how climatic factors - snow cover - and land cover - agriculture and roads - influence pronghorn movements in South Eastern Alberta. Analysis using a Bayesian movement model reveals that each of these features significantly influences pronghorn movement choices.</p> / Dissertation