The longevity of high productivity sows in the herd has become a challenge in pig production. Several factors may contribute to increased mortality rates observed over the past few years as well as lower retention rates of young sows. Chronic inflammation and metabolic disorders are conditions that sows had evolved over the years together with the greater productivity. This dissertation underlines the immunomodulatory effects of using yeast fermentation product fed to lactating sows. In the interest of determining patterns of local and systemic immune response, a new methodology to access cytokine profiles in puerperium sows was developed. In Chapter 2, one hundred-forty sows were used to evaluate the effects of two different <i>Saccharomyces cerevisiae</i> fermentation product (SCFP), a liquid source (LIQ) and a dry source (XPC®; Diamond V), on sow and litter performance. Sows were fed a common gestation diet until d 112 of pregnancy and then allotted to one of four treatments: 1) Control diet (CON), 2) CON + 15 mL/d of LIQ from d 112 to weaning (LIQ), 3) CON + 0.20% of XPC from d 112 to weaning (DRY), and 4) DRY + 15 mL/d of LIQ from d 112 to d 7 post-farrowing (D+L). Colostrum immunoglobulin concentrations were estimated using Brix refractometer. Plasma of piglets (2/sow) was collected 24 h after birth for immunocrit ratio analysis and for determination of plasma IgA and IgG concentrations. Lactation water and feed intake (ADFI) were recorded daily. Post-weaning follicle growth was evaluated by transrectal ultrasonography. Sows had the same initial BW (P > 0.13) but those fed any SCFP were heavier at weaning (P = 0.03) while not affecting sow backfat and loin depth (P>0.05). Overall, sows fed SCFP had greater ADFI than CON fed pigs (P < 0.01) while water intake, reproductive performance (total born, stillborn, weaned) did not differ among treatments (P > 0.05). Sows fed LIQ had the greatest ADFI on weeks 1, 2, 3, and overall compared to CON (P < 0.05). Litter ADG from SCFP treatments tended to be greater than CON (P = 0.10) and litter weight variability was lower (P = 0.10). No treatment effects were observed in colostrum Brix values (P > 0.77), in the piglet plasma IgG and IgA, and serum immunocrit ratio (P > 0.21). The average daily post-weaning follicle growth was greater for SCFP treatments than CON (P = 0.05). The wean to estrus interval was shorter for sows fed LIQ than CON and DRY (P < 0.01).<br><div><br></div><div>In Chapter 3 a non-invasive methodology to assess cytokine profiles from post-partum uterine lavage is described. The uteri of fourteen second and third parity sows were flushed with sterile saline solution (0.9%) on days 2, 4, and 14 post-parturition. Uterine fluid collected was immediately centrifuged and the supernatant stored at -20°C. Samples were freeze-dried, re-suspended in sterile saline (2 mL), and stored at -80°C. Cytokine profiles of the uterine fluid were evaluated using a multiplex ELISA panel including interleukin (IL)-1β, IL-4, IL-6, IL-8, IL-10, tumor necrosis factor-α (TNF-α), and interferon-γ (IFN-γ). Cytokine concentrations were calculated relative to protein content (pg/mg of protein). IFN-γ and TNF-α were lower than the limit of detection in most samples (5/38 and 1/38, respectively). IL-4 and IL-10 concentrations did not differ among days of collection (P>0.14). IL-8 was greater on day 4 than on days 2 or 14 (P<0.05). IL-1β and IL-6 were greater on days 2 and 4 than on day 14 (P<0.05).<br></div><div><br></div><div>The study presented in Chapter 4 refers to a subsample of sows (n=40) from the entire group of sows used in the study presented in Chapter 2. In this case, the methodology presented in Chapter 3 was used to evaluate SCFP effects on blood and uterine cytokine profiles in sows. A similar set of cytokines from Chapter 3 were evaluated on d 112 of gestation, d 2 and 6 post-farrowing in the plasma, and from uterine fluid collected on d 2, 4, and 6 post-farrowing. Serum C-Reactive protein (CRP) and haptoglobin concentrations were evaluated. No interactions between treatments and day of collection were observed (P>0.13). LIQ and D+L sows had the greatest serum IL-10 concentration (P<0.001) and sows fed CON tended to have lower serum concentration of IL-8 (P<0.06) vs. other treatments. Serum CRP concentrations were greatest on d 2 (P<0.001), serum IL-10 (P<0.04) and IL-4 (P<0.07) linearly decreased while serum haptoglobin (P<0.02) and IFN-γ (P<0.001) linearly increased post-farrowing. In the uterine fluid, LIQ and D+L sows had greater IFN-γ (P=0.04) concentrations and CON tended to have the least concentration of TNF-α (P=0.08). Uterine fluid IL-1 tended to linearly increase (P<0.07) and IL-6 linearly decrease (P<0.01) post-farrowing. LIQ sows had the greatest daily feed intake and CON the least during the first week of lactation (P=0.04).<br></div><div><br></div><div>In conclusion, feeding SCFP to lactating sows improved feed intake and litter growth while not affecting milk yield and colostrum quality. Besides improvements on litter ADG, the uniformity was better for all sources of SCFP. The liquid sources had slightly better results over the other sources and CON, including the greatest feed intake, less body weight mobilization, and a reduction in WEI. The method proposed to evaluate cytokine profiles in the uterine fluids of sows after farrowing, accomplished the objective of being a non-invasive procedure to be applied in puerperium sows. This new procedure was applied to analyze the immunomodulatory effects of SCFP. The correlations observed between the uterine and serum cytokines lead to a refined description of immune response in puerperium sows. Feeding SCFP to lactating sows stimulates the immune system allowing sows to build a desirable immune responses. Thus, the quicker resolution of acute phase reaction as demonstrated by greater daily feed intake in the first week post-farrowing can be attributed to SCFP immunomodulatory effects, ensuring better lactation performance.<br></div>

<div>Reproductive efficiency in sows and boars affects the profitability of swine production systems. However, breeding stock selection is primarily based on progeny performance traits such as feed efficiency, growth rate, carcass characteristics, physical appearance, and structure, especially for terminal sire lines, with less emphasis on reproduction. While maternal sire lines are co-selected for reproductive traits including birth litter size, number weaned, weaning weight, and wean to estrus interval, currently, there is no single test predictive of fertility, and thus subfertile males and sub-fertile or even infertile females enter the swine breeding herds (Oh et al., 2006b; Safranski, 2008). Thus, to maximize economic returns and swine production efficiency there is a need for a biomarker to identify boars and gilts with the greatest reproductive potential before admittance into the breeding herd. The overall aim of the described studies was to determine if biomarkers of fertility of boars and gilts could be identified in biological samples taken prior to or just after animals entering the breeding herds using high throughput omic screening tools resulting from recent advancements in mass spectrometry.</div><div>Current semen evaluation techniques only identify boars with fertility issues associated with sperm motility, morphology, and concentration. We know that seminal plasma proteins are essential for proper sperm function and play an important role in fertilization. Therefore, we hypothesized that fertility differences could be reflected in the seminal plasma proteome profiles. A fertility index was created from 110 boars with data on total born and farrowing rate following 50 single-sired matings. Thirty-two of the 110 boars were identified as having extreme phenotypes for total born and farrowing rate and were categorized into one of the following: high farrowing rate and high total born (HFHB; n=9), high farrowing rate with low total born (HFLB; n=10), low farrowing rate and low total born (LFLB; n=9), and low farrowing rate with high total born (LFHB; n=4). The seminal plasma proteins were isolated and measured using label-free liquid chromatography-tandem mass spectrometry (LC-MS/MS). There were 436 proteins measured in at least one sample across all animals, with 245 proteins considered for analysis (detected in samples of at least n=3 animals/phenotype). Of the 245 proteins, 56 were differentially abundant (P < 0.05) between the high fertility phenotype (HFHB) and at least one of the three subfertile groups. Proteins previously associated with fertility such as Porcine seminal protein I (PSP-I) and epididymis-specific alpha-mannosidase (MAN2B2) and free radical detoxification such as superoxide dismutase 1 (SOD1), peroxiredoxin 4 (PRDX4), and glutathione peroxidase 6 (GPX6) were more abundant in HFHB. Subfertile phenotypes had a greater abundance of blood microparticle proteins, biomarkers of inflammation, and lower inositol-1-monophosphatase (IMPA1), which regulates inositol production. Findings supported that seminal plasma protein profiles were distinct between boars with different fertility phenotypes and have the potential to predict boar reproductive performance.</div><div>The selection of replacement females for the sow herd is one of the most important facets in sow system management. However, selection of gilts for sow herd replacements is primarily based on how the animal appears such as feet and leg confirmation, the gilt’s underline, and parent past performance. This practice resulted in a high degree of variation in sow reproductive performance traits such as pigs per sow per year (PSY) and increased culling rates due to reproductive failure. In female swine, perinatal nutritional environment has been associated with their long-term fertility. The vaginal lipidome of 2 day and 14 day old gilts was found reflective of nutrition source, which suggests that perinatal nutrition affects the composition of reproductive tissues. Thus, it was hypothesized that the vaginal lipidome profiles of gilts at weaning would be reflective of fertility later in life. The first study aimed to find potential on-farm biomarkers that technicians could use to make selection decisions. Variables chosen as potential biomarkers have potential to influence or predict long-term fertility. Data were prospectively collected from 2146 gilts born on a commercial sow production facility and included birth and weaning weights, vulva length and width at 21 d postnatal (PN), birth and nursing litter size, days nursed, average daily gain from birth to weaning, and age at first estrus. Of the initial animals, 400 (17%) were selected for the sow herd, 353 remained after removing animals culled for non-reproductive reasons. Animals were assigned to 1 of 5 reproductive performance categories based on observation of estrus or pigs per sow per year (PSY) across two farrowings: High Fertility (HF; 23%; n=82; ≥26 PSY), Middle Fertility (MF2; 12%; n=43; 20-25 PSY), Low Fertility (MF3; 15%; n=54; <20 PSY), Infertile-Estrus (IFe; 10%; n= 36; estrus, no pregnancy), and Infertile-No Estrus (IFno; 39%; n=138; no estrus, no pregnancy). Generalized linear model analysis indicated vulva width (P=0.03) was related to PSY, however, it only explained 1.5% of the total variation in PSY. To determine if preweaning variables were predictive of gilt fertility outcome, animals were grouped as those that became pregnant (n=179) or not (n=174). Vulva width tended to be greater in fertile animals versus infertile (P=0.07). Binomial regression analysis revealed a positive relationship between vulva width and gilt fertility; however, this relationship is not strong enough to make sow herd selection decisions.</div><div>Because gilts are so phenotypically similar at weaning, we hypothesized that the biomarker predictive of fertility at this stage of selection might need a more sensitive means of detection. Therefore, we evaluated the vaginal lipid profiles from a subset of animals enrolled in the previous study that were the extremes of fertility phenotype: High Fertility (HF; n=28; ≥26 PSY) and Infertile (IF; n=34; no estrus, no pregnancy). Vaginal swabs of the anterior vagina were taken at 21 ± 4 d PN. Lipids were extracted from cellular material collected with swabs and analyzed using multiple reaction monitoring (MRM) profiling for lipidome analysis. Relative abundance of arachidonic acid (ARA, C20:4) and docosahexaenoic acid (DHA, C22:6) were lower (P<0.05) in IF gilts than HF gilts, whereas abundance of the free fatty acids cerotic (C26:0), ximenic (C26:1), and nonadecanoic (C19:0) acids were greater (P<0.05) in IF gilts. Additionally, eicosapentaenoic acid (C20:5), a precursor of prostaglandins, was also higher (P<0.05) in IF gilts.</div><div> Previous studies support that higher levels of arachidonic acid in vaginal lipidomes maybe a biomarker of colostrum intake, and thus provides further evidence for a relationship between fertility and the perinatal nutritional environment. The perspective of having a panel of lipids captured with vaginal swabs at weaning that can predict the reproductive efficiency of gilts shows promise and warrants future research in this area. Taken together, the experiments described above demonstrate that detection of infertile and subfertile animals before entering the breeding herd is possible and warrants further development and validation of diagnostic panels capable of doing so. </div><div><br></div>

Orientador: Carlos Roberto Teixeira / Resumo: O cão selvagem Cerdocyon thous, mais conhecido como cachorro-do-mato, estão suscetíveis a problemas como predação, caça e atropelamentos. A colheita e criopreservação do sêmen torna-se uma técnica auxiliar para a conservação ex situ, para tanto, estudos iniciais de caracterização seminal devem ser desenvolvidos. Esta espécie pode servir como modelo para espécies seriamente ameaças. O objetivo do trabalho foi realizar a colheita de sêmen por estimulação digital do pênis após o condicionamento dos animais, relatar as características seminais para a espécie, mensurar volume testicular e dimensões da próstata por ultrassom, além de relatar parâmetros Dopplerfluxométricos. Utilizamos machos adultos, (n=5), com idade média de 3 anos, (variando de 2 a 5 anos), pesando em média (± DP) 7 kg mantidos em cativeiro. O condicionamento teve início em maio de 2018, sendo que foram utilizados 13 ejaculados para as avaliações. Média e desvio padrão foram calculados. Com volume médio de 463,8  164,9 µL e concentração de 393,2  49,5 X 106 espermatozoides/mL, motilidade total 68,0  1,7%, progressiva 48,8 1,4% e rápidos 57,2  1,9%. Na avaliação morfológica foi encontrada alta prevalência de defeitos de cabeça (acrossomo, pequena anormal, diadema defect e formas teratológicas). O volume testicular 2,2 cm3 (0,2) para o testículo esquerdo e 2,1 cm3 (0,2) testículo direito, próstata com dimensão crâniocaudal e dorsoventral respectivamente, 2,3 cm (0,2) e 1,5 cm (0,1cm). Na avaliação ultrasso... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: The crab-eating fox Cerdocyon thous, known as the forest fox, is susceptible to problems such as predation, hunting and running over. Semen collection and cryopreservation becomes the main technique used for ex situ conservation. Therefore, initial studies of seminal characterization should be developed. This species can serve as a model for seriously threatening species. The objective of this study was to collect semen by digital penis stimulation after animal conditioning, to report seminal characteristics for the species, measure testicular volume and prostate dimensions by ultrasound, and report Triplex doppler velocometric parameters. We used 5 animals, males, adults, weighing 7 kg on average kept in captivity. The conditioning began in May 2018, 35 ejaculates were obtained, but just 13 were used for the evaluations. The results were expressed as average and standard error. The ejaculates presents 463.8µL ±164.9 of average volume, average concetration of 393.2 ±49.5 x 106 / mL, total motility average, progressive and rapid of 68 ±1.7%; 48.8 ±1.4%; 57.2 ±1.9% respectively. In the morphological evaluations, high prevalence of defects were observed (acrosomal injury, small abnormality and teratological forms). The testicular volume was 2.2 ±0.2 cm3 for the left testis and 2.1 ±0.2 cm3 right testis, prostate with cranio-caudal and dorsoventral dimensions respectively, 2.3 ±0.2 and 2.1 ±0.2cm. At Triplex doppler ultrasound evaluation, systolic peak velocity (SPV) with a highe... (Complete abstract click electronic access below) / Mestre

<p>Fat supplementation has potential to improve reproductive performance and increase pregnancy rates in cattle by increasing the energy density of the diet. However, some of the positive effects of fat seem to be influenced by the type of fatty acid fed. Supplementation of omega-3 (n-3) fatty acids increase uptake of n-3 fatty acids into tissue phospholipids and can mitigate immune and inflammatory responses in favor of pregnancy maintenance in cattle. However, n-3 fatty acid supplementation in ruminants has been associated with a decrease in circulating PGF_2α, which may delay CL regression, extend an animal’s time in diestrus, and prevent ovulation. Prostaglandin F_2α is a series 2 prostaglandin, synthesized from omega-6 (n-6) fatty acids, which is inhibited by production of series 3 prostaglandins from n-3 fatty acids. Docosohexaenoic acid (DHA, 22:6n-3) and eicosapentaenoic acid (EPA, 20:5n-3) are long-chain n-3 poly-unsaturated fatty acids (PUFA) that have important biological effects on reproduction through their involvement in hormone and series 3 prostaglandin synthesis. Ruminant tissues are naturally almost devoid of n-3 long-chain PUFA, specifically EPA and DHA. Fish oil is the most common ration additive used to provide very long chain n-3 fatty acids to ruminants. However, marine fish do not synthesize n-3 fatty acids; they consume microscopic algae or other algae-consuming fish to obtain n-3 fatty acids. Algae biomass provides a consistent source of DHA and EPA that could be fed to alter hormonal profiles and improve reproduction of beef heifers. Eighty-eight Angus × Simmental heifers (427 ± 1.8 kg) were blocked by BW and allotted to 2 treatments (44/treatment, 4 pens/treatment, 11 heifers/pen). Control heifers were fed a diet that contained (DM basis) 52.8% mixed grass silage, 32% corn silage, and 15.2% concentrate. DHAgold™ (49% fat; 21.8% DHA; DSM Inc.) was included in the algae diet at 1.65% of DM, replacing equal parts of corn and DDGS. Diets were formulated to contain 12% CP and 0.79 Mcal/kg NEg. Heifers were fed treatment diets from 54 d prior to the breeding season through the first trimester. Follicular fluid was collected on day 47 for hormonal analysis. Artificial insemination (AI) was from d 55 to 98, after which open heifers were removed to 1 control and 1 algae pen and placed with a bull. The study ended on d 180. Performance data were analyzed using the MIXED procedure and conception data were analyzed using the GLIMMIX procedure of SAS. Dominant follicle diameter and follicular estrogen concentration were unaffected by treatment (<i>P</i>≥0.12). Follicular insulin-like growth factor-1 was greater in algae compared to control heifers (<i>P</i>=0.03). During the pre-breeding period, algae supplemented heifers had lesser DMI (<i>P</i>=0.006), and greater ADG (<i>P</i>=0.03) during the breeding period, while BW tended to be greater compared to control heifers on d 98 and 180 (<i>P</i>≤0.07). First service conception rate did not differ between treatments (<i>P</i>=0.67); however, second service tended (<i>P</i>=0.08) and overall conception was (<i>P</i>=0.03) lesser in algae compared to control heifers. These data suggest supplementing DHA-rich algae improved growth, but decreased conception rates of primiparous beef females.</p>

<p dir="ltr">The White Pekin duck (<i>Anas platyrhynchos domesticus</i>) is the most widely consumed duck protein in the world. Total duck meat production had a global annual increase of 2.1% per year from 2010 to 2019. The increase in duck meat production can be credited to improved management strategies, nutritional programs, and genetic improvement made to the Pekin ducks by structured breeding programs. Regardless of the advancements already achieved by Pekin duck breeding programs, improvements can still be made. One such improvement that can be made in Pekin duck populations is reducing the frequency of the emerging welfare concern known as flip-over (FO). We hypothesize that egg quality traits, wingspan, back length, and hip width are genetically influenced and their inclusion into Pekin duck breeding programs can be used to improve the Pekin duck. Egg quality traits were collected at weeks of age 30, 32, 35 and 40 on two generations of Pekin duck hens. All heritability estimates and Genetic correlations were calculated using BLUPF90 software, the Restricted Maximum Likelihood (REML) method, and 9,418 individuals in the pedigree. All egg quality traits evaluated are moderate to highly heritable ranging from 0.23 for egg shape to 0.70 for shell ratio. Two hatches of 1,200 Pekin duck hens were assessed at day of age 23 and 30 for wingspan, hip width, and back length using image analysis. Wingspan, hip width, and back length were found to be heritable ranging from 0.04 ± 0.013 to 0.27 ± 0.025 for hip width and back length respectfully. This thesis will discuss approaches to evaluating genetic parameters of egg quality traits in hatching eggs and the possibility of reducing FO through the selection of increased wingspan length.</p>

<p dir="ltr">Boars in the swine industry are one of the select animals subject to limit feeding. Limit feeding boars occurs once boars are selected to enter the boar stud. Before selection boars are <i>ad libitum</i> fed like a nursery or grow finishing pig. Research involving boar nutrition and the impact it has on growth, development, and semen characteristics are limited compared to the rest of the swine industry. The objective of these studies conducted at Purdue University were to determine how varying nutritional feeding strategies impact semen quality and quantity as well as growth and development of artificial insemination boars.</p><p dir="ltr">Feeding fiber is a commonly used strategy in gestating sow nutrition to mitigate some of the negative side effects of limit feeding animals. A variety of fiber sources are available to the swine industry, however most of the common sources used are wheat bran, alfalfa meal, sugar beet pulp, and soybean hulls. Soyhulls are one of the more easily accessible sources of fiber in Indiana and the Midwest U.S. due to large amounts of soybean production and processing which will continue to grow with bi-energy demands. Boars fed the fiber diet (14.3% soyhulls) had increased bodyweight and body condition changes over the twelve-week period. Additionally, fiber inclusion in the diet had no impact on semen characteristics but semen was impacted by the age and breed of the boar. Salivary cortisol levels were reduced in boars fed fiber as well as some changes in behavior were observed.</p><p dir="ltr">The addition of fiber had impacts on growth and development but no impacts on semen. Since boars are limit-fed for so long from selection after the grow-finish period until they are culled this drew up the question if feeding boars different levels after selection (1.8 kg/d or 2.7 kg/d) impacted trainability, first time semen collection characteristics, growth and development of young boars. No differences were observed for feeding level impacting trainability with 92% of all boars regardless of treatment being successfully trained. Semen volume was increased in boars fed 2.72 kg/d by approximately 50% but no other semen characteristics were impacted. Boars fed 2.72 kg/d also had increased bodyweight and body condition score measures.</p><p dir="ltr">The boars subject to the training study unknowingly arrived at the farm naturally infected with porcine circovirus three (PCV3). Research has been conducted on the ability of viruses (PRRSv, PEDv) to be detected and transmitted through semen. Porcine circovirus three is a relatively new variant of circovirus so the opportunity to evaluate the question of if this virus was able to be detected in seminal plasma and the impacts it has on semen characteristics was presented. Serum and semen samples were collected for polymerase chain reaction analysis of detection of PCV3 conducted at Purdue Animal Disease Diagnostic Laboratory. Porcine circovirus three was able to be detected in the serum of positive boars however no positive detection occurred for seminal plasma samples. Morphological abnormalities such as distal midpiece reflex, distal droplets, and head and tail differed between infected and non-infected boars. Young boars sero-positive for PCV3 had decreased total sperm, total normal sperm motility, and head and tail abnormalities but had decreased distal midpiece reflex abnormalities when compared to PCV3 negative young boars. Young boars were also able to maintain the virus for 98+ days, while some old boars were able to clear the virus withing 14 weeks of becoming positive.</p><p dir="ltr">The next chapter evaluated maintenance energy equation listed in the swine NRC 2012 and if it was still accurate for sexually active boars and if weight management through the use of this equation impacted boar performance. Boars were subject to three treatments (150%, 100%, 80%) of maintenance energy for the first nine-week period and 150% and 80% diets were switched for second nine-week period while 100% stayed the same the entire time in a cross-over design. Semen, bodyweight, and body condition parameters were analyzed throughout the two nine-week periods. Boars fed 80% of maintenance had the largest reduction in semen parameters compared to 150% and 100% maintenance fed boars. Additionally, switching 80% feed intake boars to 150% maintenance feed intake, boars were able to recover some of the negative impacts, however they were not able to fully recover in the second nine-week period. Boars fed 100% and 80% maintenance energy lost weight regardless of age. The loss of body weight of the 100% maintenance fed boars indicates the swine NRC 2012 equation is underestimating the modern AI boar maintenance needs. Old boars were able to handle changes in weight and body condition better than young boars as there was reduced variation in serum metabolites analyzed with old boars compared to young boars.</p><p dir="ltr">The last chapter of this thesis focused on a big data project from commercial sow farms. The objective of this study was to determine if breeding gilts at first signs of estrus or after has an impact on sow performance and economic value to parity three. A regression model was developed from on farm data to determine the difference in total born piglets to parity 3 between gilts bred on their first estrus or after. Gilts bred on their first estrus had six fewer total piglets to parity three compared to gilts who were bred after the first estrus. Also, gilts bred after their first estrus had a larger percentage of sows being profitable compared to gilts bred on first estrus. This model data was compared to actual data for comparison between the two. The model with the limited variables inputted and compared to the actual data was fairly accurate with economic profitability and with more refinement the accuracy can be increased.</p><p dir="ltr">Overall, nutrition of the boar needs to be an area of interest in the swine industry to continue improving efficiency of production. Feeding fiber to boars has minimal impact on semen characteristics but can be used to reduce stress in boars that are limit-fed for weight and body condition management. Limit feeding boars beginning at selection reduces growth and development and had negative impacts on first time semen collection volume. Porcine circovirus 3 was not found in the seminal plasma of naturally infected boars when serum analysis was positive. Boars fed below maintenance levels listed in the swine NRC 2012 have negative impacts on semen, bodyweight, and body condition parameters. Once diets were changed boars were able to recover from the feed restriction but not meet baseline measures prior to feed restriction. Young boars are more sensitive to feeding changes than old boars, this could be due to the young animal still growing while the older animal is closer to mature size. Big data projects can aid producers in making production changes decisions to estimate the economic impact it can have to an individual farm or the entire production system.</p>

<p dir="ltr">In this dissertation, we investigated the genetic background of milk consumption, feeding behavior, disease resistance, and calf resilience in North American Holstein dairy calves using precision livestock farming (PLF) technologies and genetic modeling. Genomic and phenotypic information obtained from automatic milk feeding machines were obtained from 10,072 pre-weaned Holstein calves and used to derive and genetically evaluate novel traits such as daily milk consumption, calf resilience, and incidence of bovine respiratory disease (BRD). Heritability estimates for milk consumption and feeding behavior traits were found to be low but improved with specific statistical models, suggesting potential for genetic improvement if included in selection schemes. Random regression models captured greater amounts of genetic variability among calves for longitudinal milk feeding and behavior traits, with moderate negative (favorable) genetic correlations between milk consumption and BRD, indicating potential for genetic selection to enhance calf health outcomes and performance based on milk intake data. Various quantitative trait loci (QTL) for milk consumption, drinking duration traits, feeding behavior, and disease susceptibility were identified, linking key genes involved in metabolic processes, growth, and overall health. The same datasets were used to derive resilience indicators based on cumulative milk consumption. Genetic parameters for resilience traits, including amplitude, perturbation time, and recovery time, were estimated, highlighting substantial phenotypic and genetic variability. Significant genomic regions for six resilience traits were identified, with key genes such as <i>ABCB8</i>,<i> ABCF2</i>, and <i>AGAP3</i> linked to resilience traits, impacting mitochondrial function, cellular stress responses, and homeostasis. Pathway analyses revealed critical biological processes for stress response, including nucleotide binding and hormone activity. Genes such as <i>EPC1</i>, <i>ASB10</i>, and <i>ASIC3</i> were associated with recovery time, while <i>DPP6</i>, <i>GBX1</i>, and <i>GIMAP5</i> were linked to other resilience traits. These findings underscore the importance of genetic tools and breeding strategies in enhancing health, resilience, and productivity, offering potential new traits to genetically improve health and resilience in dairy cattle, and consequently, improve the sustainability of the dairy cattle industry.</p>

Dentre os répteis que ocorrem na Amazônia, os quelônios se destacam pela sua diversidade e importância econômica. Podocnemis expansa, conhecida popularmente como tartaruga-da-amazônia, é considerada o maior quelônio de água doce da América do Sul e tem sido explorada intensamente, por séculos, por inúmeras comunidades indígenas e ribeirinhas. O presente estudo teve como objetivo ampliar os conhecimentos acerca da ecologia populacional e da biologia reprodutiva de P. expansa no rio Javaés, Estado do Tocantins, no entorno do Parque Nacional do Araguaia (Ilha do Bananal). No primeiro capítulo desta dissertação foram investigados alguns aspectos da ecologia populacional. Os trabalhos em campo foram realizados entre os anos de 2004 e 2009 e os animais foram capturados pelos métodos de mergulho e arrasto de rede. Com os resultados obtidos, foi observado que a estrutura etária (baseada no comprimento da carapaça) dos indivíduos apresentou um padrão unimodal para os machos e um padrão não definido para as fêmeas. A população estudada era constituída basicamente por fêmeas jovens e machos adultos, apresentando uma razão sexual desviada para as fêmeas de 1:1,4 (:). A abundância relativa variou entre 0,4 e 8,6 animais/hora, dependendo do método de captura empregado, e a maioria dos animais (73,7%) encontrava-se concentrada em apenas um ponto específico do rio. No segundo capítulo, foram estudadas as relações alométricas entre o tamanho corpóreo da fêmea, seus rastros, as variáveis da ninhada e a forma dos ninhos em ambiente natural. O trabalho de campo foi realizado em uma praia de desova da área estudada, entre os meses de setembro e dezembro de 2008. Os resultados mostraram que o tamanho corpóreo da fêmea de P. expansa pode ser estimado em função do seu rastro, que fêmeas maiores deixam rastros maiores na areia, além de produzirem mais ovos (tamanho da ninhada) e com maior massa (massa da ninhada) do que fêmeas menores e que as variáveis largura da carapaça e massa da fêmea podem ser consideradas como confiáveis para estabelecer relações nos estudos de alometria com P. expansa. / Among the reptiles found in the Amazon, the turtles stand out because of its diversity and economic importance. Podocnemis expansa, popularly known as Amazon river turtle, is considered the largest freshwater turtle in South America and has been heavily exploited for centuries by many indigenous and riverine communities. This study aimed to expand the knowledge about the population ecology and the reproductive biology of P. expansa in the Javaés River, Tocantins State, around the Parque Nacional do Araguaia (Iha do Bananal). In the first chapter of this dissertation some aspects of population ecology were investigated. Fieldwork was carried out between 2004 and 2009, and the animals were captured by diving and trawling net. The age structure (based on carapace length) of the animals showed a unimodal pattern for males and not a standard defined for females. The population consisted mainly of young females and adult males, with a sex ratio of 1:1.4 (:), biased to females. The relative abundance varied between 0.4 and 8.6 animals per hour depending on the method of capture employed, and most animals (73.7%) was concentrated in a single specific point of the river. In the second chapter, the allometric relationships between female body size, their tracks, the clutch variables and nest form in natural environment were investigated. Fieldwork was carried out on a nest beach of the study area, between September and December 2008. Results indicated that P. expansa female body size can be estimated based on her track. Larger females leave larger foot tracks in the sand and produce more eggs (clutch size) with greater mass (clutch mass) than smaller females. Female carapace width and female body mass can be regarded as reliable to establish relationships in studies of allometry with P. expansa.

O objetivo do experimento foi verificar o efeito da adição do óleo de soja, óleo de linhaça, óleo de coco babaçu e sebo bovino na ração de fêmeas suínas lactantes. As dietas eram energeticamente altas, sendo uma dieta basal acrescida em 8% por diferentes fontes de energia, (1) óleo de soja, (2) óleo de linhaça, (3) óleo de coco e (4) gordura animal, tratamentos 1, 2, 3 e 4 respectivamente. O experimento foi realizado na Fazenda Santa Rosa, Leme, SP. As variáveis avaliadas foram peso inicial, aos 100 dias de gestação (PI), peso à desmama (PD), espessura de toucinho aos 100 dias de gestação (ETI), espessura de toucinho à desmama (ETD), mudanças corporais no período lactacional como perda de peso (PP), perda de espessura de toucinho (PET), produção de leite (PL) e peso dos leitões (Ple) nos dias 7, 14 e 21 da lactação, intervalo desmama estro (IDE), duração do estro (DE) e concentrações de estrógeno (Es) à desmama, 48 horas após a desmama e no estro. A espessura de toucinho foi medida no P2. A técnica de PL foi realizada pela técnica de peso dos leitões antes e depois das mamadas. O manejo para diagnóstico do estro foi realizado duas vezes ao dia. As coletas de sangue foram realizadas em 3 ocasiões à desmama (Dia 1), 48 horas após a desmama (Dia 2) e na comprovação do estro (Dia 3). As análises da (Es) foram realizadas pela técnica de radioimunoensaio. Foram utilizadas 24 fêmeas, em um delineamento inteiramente ao acaso. Os resultados foram analisados através do programa computacional Statistical Analysis System (SAS Institute Inc., 1985) submetidos à análise de variância pelo procedimento GLM (PROC GLM). Para os valores de peso, espessura de toucinho, bem como das mudanças no período não houve diferença significativa, e os resultados foram para PI 257,7; 259,3; 265,0 e 267,0 quilos e para PD 231,3; 217,4; 224,9 e 225,0 quilos para os tratamentos 1, 2, 3 e 4, respectivamente. Os valores de 17,0; 16,5; 16,5; 16,0 milímetros foram para ETI e 13,2; 12,13; 12,5 e 12,0 mm para ETD nos tratamentos 1, 2, 3 e 4, respectivamente. A PP durante a lactação foi de 44,4; 41,9; 40,1 e 39,1 para os tratamentos 1, 2, 3 e 4, respectivamente. Já a PET apresentou médias de 3,8; 4,2; 4,0 e 4,0 mm nos tratamentos 1, 2, 3 e 4, respectivamente. Não foi encontrada diferença significativa para PL, bem como para os diferentes dias de mensurações tendo como resultados no 7º dia 10,13; 9,43; 8,98 e 8,85 Kg para os diferentes tratamentos 1, 2, 3 e 4, respectivamente. No 14º dia os valores médios para os tratamentos foram de 10,12; 11,20; 10,26 e 8,79 Kg, respectivamente, e os valores de 11,34; 10,47; 10,56 e 10,76 Kg para os tratamentos 1, 2, 3 e 4, respectivamente para o 21º dia. O peso dos leitões não foi significativo entre os tratamentos, mas apresentou significância nos três diferentes tempos (P < 0,01) e os valores médios foram de 2,87; 2,95; 2,83 e 2,9 Kg para os tratamentos 1, 2, 3 e 4, respectivamente para o 7º dia de amamentação, de 5,01; 4,88; 4,8 e 4,75 Kg nos tratamentos 1, 2, 3 e 4, respectivamente para 14º dia. Já para o 21º dia os valores nos tratamentos 1, 2, 3 e 4, respectivamente foram de 6,80; 6,58; 6,56 e 6,82 Kg. O IDE e DE não apresentaram diferença significativa e tiveram como médias nos respectivos tratamentos 1, 2, 3 e 4 de 74,0; 68,0; 70,3 e 78,7 horas para IDE e 57,6; 62,0; 64,0 e 72,0 para DE. Para as médias de Es não houve significância e estas apresentaram os seguintes valores de 10,25; 12,82; 9,65 e 8,71 pg/ml nos respectivos tratamentos 1, 2, 3 e 4 no dia 1. Para o dia 2 os valores nos tratamentos 1, 2, 3 e 4 foram de 25,8; 27,39; 24,64 e 32,12 pg/ml respectivamente, e os valores de 83,6; 79,14 e 77,64 pg/ml para os tratamentos 1, 2, 3 e 4, respectivamente referentes ao dia 3. / Twenty-four Dalland C40 sows were used in one experiment to study the effect of dietary vegetable oil or tallow on productive and reproductive parameters. All sows were fed a corn-soybean meal diet supplemented with 8% soybean (T1), linseed (T2), coconut (T3) oil or tallow (T4) from day 100 of gestation and throughout the lactation period. Sow initial weight and backfat thickness were determined at day 100 of gestation (ISW and IBT, respectively), and at weaning (WSW and WBT, respectively). Sow weight and backfat thickness losses (WL and BTL, respectively) were calculated, and milk yield (MY) was estimated at day 7, 14 and 21 of lactation by weighing the litter before and after suckling. Interval weaning estrus (IWE), and estrus duration (ED), and piglet weight (PW) were recorded. Blood samples were taken at weaning (day 1), and 48 hours after weaning (day 2), and at onset of estrus (day 3) for estradiol (E2) determination. There were no treatment effects for the parameters studied. The means for E2 were 10.25; 12.82; 9.65 e 8.71 pg/ml (day 1), and 25.8; 27.39; 24.64 e 32.12 pg/ml (day 2), and 83.6; 79.14 e 7764 pg/ml (day 3) for treatment 1, 2, 3 e 4, respectively. Means for E2 on day 3 were higher than values observed on day 1 and 2.

Duzentos e vinte e uma vacas (78 com bezerros entre 40 e 90 dias de idade) mestiças Nelore (Bos taurus indicus) X Charolês (Bos taurus taurus) foram utilizadas para avaliar a reutilização de implantes auriculares de silicone impregnados com progestágenos para controle farmacológico do ciclo estral e ovulação. Os tratamentos experimentais consistiram de três protocolos para sincroni zação do cio e inseminação artificial em tempo pré-determinado. No tratamento 1 (T1; n=73) as vacas receberam um implante auricular de Crestar® (3 mg de norgestomet); no tratamento 2 (T2; n= 75) as vacas receberam um implante auricular de Crestar® já utili zado anteriormente em outra sincronização; e no tratamento 3 (T3; n=73) as vacas receberam dois implantes auriculares de Crestar® também já utilizados, os quais foram colocados lado a lado na mesma orelha. Além dos implantes, as vacas receberam aplicação intramuscular (im) de uma associação de 2 mL de progesterona (25mg/mL) + benzoato de estradiol (1mg/mL) no momento da colocação dos implantes (D0). Os implantes foram removidos após 8 dias (D7) junto a uma aplicação (im) de Preloban® (150mg de D-cloprostenol). Após 24h da remoção do implante, foi aplicado uma dose (im) de Estrogin® (1mg de benzoato de estradiol). Todas as vacas foram inseminadas artificialmente 54-56h após a retirada dos implantes. Noventa por cento do sêmen utilizado no experimento foi proveniente de um só touro, os 10% restantes foram distribuídos equitativamente entre os tratamentos. A inseminação artificial foi realizada por um único inseminador. As vacas com bezerro ao pé apresentaram um escore de condição corporal entre 5 e 6, numa escala de 1 a 9, e as vacas sem bezerro entre 6 e 7. A variável estudada foi a taxa de prenhez das vacas. A análise estatística foi realizada com o auxílio do pacote estatístico "Statistical Analysis System 8.0", utilizando regressão logística. Não houve dife rença na taxa de prenhez das vacas, sendo 39,72%, 34,21% e 36,98% para os tratamentos T1, T2 e T3, respectivamente. A reutilização de implantes com progestágeno não altera a taxa de prenhez de vacas aptas à reprodução. / Two-hundred and twenty-one (78 suckling- 40 to 90 days) Nelore (Bos taurus indicus) X Charolais (Bos taurus taurus) cows were used to evaluate the reutilization of progestagen implants to control pharmacologically the estrus cycle and ovulation. Cows were randomly assigned to one of three protocols for estrous synchronization and artificial insemination in pre-fixed time. In treatment 1 (T1; n=73) cows were implanted with Crestar® (3 mg de norgestomet); in treatment 2 (T2; n= 75) cows were implanted with Crestar®, already used in a previous synchronization; and in treatment 3 (T3; n=73) cows received two Crestar® implants, also previously used, both placed side by side in the same ear. All cows were injected with an intra muscular (i.m.) dose of 2 mL of progesterone (25mg/mL) + estradiol benzoate (1mg/mL) at the time of implants insertion (D0). Implants were removed after 8 days (D7) and an i.m. dose of Preloban® (150mg de D-cloprostenol) was administered. Twenty-four hours after implants removal, cows were i.m. injected with a dose of Estrogin® (1mg of estradiol benzoate). All cows were artificially inseminated at 54-56 h after implants removal. Ninety percent of semen used in the experiment was from only one bull, the remaining 10% were equally distributed among treatments. Artificial insemination was performed by only one technician. Suckling cows had a body condition score of 5-6, in a scale of 1-9, and the non-suckling cows were 6-7. Pregnancy rate was the variable studied. Statistical analysis was accomplished by using "Statistical Analysis System 8.0", and logistic regression. There was no difference (P>0.05) on cow’s pregnancy rate among treatments. Pregnancy rates were 39.72, 34.21 and 36.98% for T1, T2 and T3, respectively. Progestagen implants reutilization did not affected pregnancy rate in beef cows ready for reproduction.