Doctor of Philosophy / Department of Animal Sciences and Industry / Barry J. Bradford / The transition period in dairy cows is characterized by dramatic increases in nutrient requirements for lactation and substantial metabolic stress. The disturbed metabolic balance, coupled with suppressed immune function, contributes to markedly elevated incidence of health disorders. Several lines of evidence suggest that increased inflammation is common during the transition period. Unlike the classical inflammation associated with acute infection, the postpartum inflammatory state is low-grade and often of metabolic origin. This metabolic inflammation plays a key role in numerous disorders; an improved understanding of inflammatory pathways in transition cows may improve our ability to predict and prevent disorders. To mimic metabolic inflammation, in Experiment 1, we administered low amounts of recombinant bovine tumor necrosis factor-α (rbTNFα), a pro-inflammatory cytokine, to early lactation cows, and evaluated whether rbTNFα affects milk production, metabolism, and health. We found that rbTNFα administration increased systemic inflammation, decreased feed intake and milk yield, and increased incidence of disorders. Conversely, preventing excessive inflammation has the potential to improve productivity and health of dairy cows. To identify nutritional strategies that could enhance metabolism and immunity, we evaluated the efficacy of several feed additives. In Experiment 2, we evaluated effects of chromium propionate, rumen-protected lysine and methionine, or both on metabolism and immunity in lactating dairy cows, and found that supplementation of these nutrients may enhance neutrophil function. In Experiment 3, we determined whether supplementation of yeast product to transition cows could enhance production, metabolism, and immunity, and found that yeast product modulated feeding behavior, metabolism, immunity, and uterine inflammation. Overall, a greater understanding of the role of metabolic inflammation in the transition period and the nutritional strategies that could modulate these signals may improve the production and health of dairy cows.

Master of Science / Department of Animal Sciences and Industry / Terry A. Houser / A total of 48 carcasses were taken from a larger trial using 288 pigs (PIC TR4 × 1050, initially 58.9 kg) in a 73 d feeding study to determine the effects of sorghum dried distillers grains with solubles (S-DDGS) in sorghum- or corn-based diets on ground pork quality. The dietary treatments included: sorghum-based diets with 0, 15, 30, or 45% SDDGS, a sorghum-based diet with 30% corn DDGS (C-DDGS) and a corn-based diet with 30% C-DDGS. Shoulders from 24 barrow and 24 gilt carcasses were ground and evaluated for proximate and fatty acid composition, iodine value (IV), objective color, thiobarbituric acid-reactive substances (TBARS), and sensory attributes. No finishing diet × gender interaction was detected for composition, fatty acid profile, color or TBARS (P > 0.05). Pork from gilts contained less fat and more moisture (P < 0.001), was less saturated with a greater IV and total percentage of PUFA (P < 0.01), and also had a lower L* value (P < 0.001) and higher a* value (P = 0.006) than pork from barrows. Gender did not affect total color change ( E) from 0 to 120 h (P = 0.30), TBARS (P = 0.08), or sensory attributes (P ≥ 0.32). Finishing diet had no affect on total fat, moisture, or protein composition (P ≥ 0.18). Increasing S-DDGS resulted in a linear (P < 0.001) decrease in SFA and MUFA and an increase (P < 0.01) in PUFA and ground pork IV. Pork from pigs fed 30% S-DDGS had a greater percentage of MUFA (P = 0.01) and a lower percentage of PUFA (P > 0.006) and reduced IV (P = 0.03) compared to pork from pigs fed the sorghum-based diet with 30% C-DDGS. Diet did not affect TBARS (P = 0.37) or L*, a*, or b* values (P ≥ 0.11) but was shown to influence E (P = 0.01) with pork from pigs fed sorghum grain and 30% S-DDGS having less total change than all other treatments. It is concluded that consumers will not be able to differentiate ground pork from pigs fed DDGS and that feeding sorghum grain and S-DDGS can be done without affecting ground pork quality.

Master of Science / Department of Animal Science / R. Scott Beyer / Daniel Y.C. Fung / Clostridium perfringens causes necrotic enteritis (NE), resulting in decreased feed efficiency and increased mortality, costing the poultry industry USD 2 billion a year worldwide. The objective of the first trial was to validate the Fung Double Tube (FDT) to detect and enumerate C. perfringens in chicken intestines. Two methods (FDT and petri plates) and three media (Shahidi Ferguson Perfringens [SFP] with egg supplement, polymyxin B [p], and kanamycin [k; E]; SFP with p and k [P]; and SFP with cycloserine [C]) were arranged in a 2 x 3 factorial, resulting in six treatments. The FDT with medium C (5.35 log CFU/g) had significantly (P<0.05) higher C. perfringens counts than any other media/method combination. The objective of the second and third trials was to determine the effect of diet type on the population of C. perfringens in broiler intestines using the FDT. Trial 2 tested: corn-soybean meal (SBM), low-crude protein (19.8%)/high synthetic amino acids (SAA), and barley (56%)-fishmeal (4%; BF). Diets in Trial 3 included: corn-SBM, barley (7.46%), fishmeal (4%), and BF. Diets in Trial 2 contained an antibiotic and a coccidiostat; diets in Trial 3 did not. After 21 days, birds in Trial 2 fed BF had significantly higher (P<0.05) counts (5.96 log CFU/g) of C. perfringens, as compared to all other diets. Both, corn-SBM and SAA diets resulted in 3.89 log CFU/g. In Trial 3, birds fed the corn-SBM diet (2.7 log CFU/g) had significantly lower (P<0.05) counts than broilers fed BF (4.15 log CFU/g). When broilers were fed fishmeal (3.583 log CFU/g) and barley (3.577 log CFU/g) separately, C. perfringens counts were numerically higher compared to the corn-SBM diet, but numerically lower than birds fed BF. Barley and fishmeal inclusion increased the incidence of C. perfringens, and their combination resulted in a cumulative effect. The FDT method is able to detect C. perfringens at higher levels than the conventional petri plate method (P<0.001) and it also proved to be an effective method to detect differences in C. perfringens counts from the intestines of chickens fed different diet.

Master of Science / Department of Food Science / Elizabeth A. Boyle / Animal production factors can affect nutritional composition and quality of poultry meat. Quality attributes and fatty acid composition were evaluated on breast and thigh meat with skin from free range, heritage bred chickens (>116 day of age) (HB) and commercial broilers (<50 day of age) (CM). In addition, sensory and textural attributes were evaluated on breast and thigh meat of HB, and air or water chilled CM. Moisture and fat content was similar (P>0.05) between chicken types without skin. Thigh meat had at least 2.41% more fat (P<0.05) than breast meat; however, breast meat had at least 2.33% more moisture (P<0.05) regardless of skin inclusion or chicken type. Heritage meat with or without skin had a greater amount (P<0.05) of ω3 polyunsaturated fatty acids (PUFA) than CM regardless of chilling type and HB had a lower, more desirable ω6:ω3 ratio of 12.79 when compared to air or water chilled CM at 15.20 and 14.77, respectively. Heritage breast and thigh meat with skin contained 35.60 and 35.21% PUFA which was greater than (P<0.05) CM breast and thigh meat with skin at 20.96 and 20.45%, respectively. Whole carcass weight of CM, breast weight, and bone-in thigh weight was 71.30%, 148.0%, and 52.2% heavier (P<0.05), respectively, than HB weight. However, bone-in thigh yield was 2.1% higher (P<0.05) in HB. Commercial broiler breast and thigh meat was more tender (P<0.05) with higher myofibrillar tenderness and overall tenderness values and having less connective tissue than HB breast and thigh meat. Thigh meat from HB also had the highest (P<0.05) peak force values for Warner-Bratzler (3.47 kgf) and Allo-Kramer (7.22 kgf/g sample) shear tests. Thigh meat was perceived to be more juicy (P<0.05) and have more chicken flavor intensity (P<0.05) than breast meat. Heritage meat showed advantages in fatty acid profiles while CM meat showed advantages in yields and tenderness attributes.

Master of Science / Food Science Institute / Randall K. Phebus / The USDA declared seven STEC serotypes to be adulterants in raw, non-intact beef products due to their severe health implications. STEC contamination of carcasses is most likely to occur during hide removal. This study evaluated the efficiency of a mixed STEC-7 inoculum to attach to raw beef carcasses (predominantly lean muscle and adipose tissue), and compared the efficacy of 4.5% lactic acid (LA) to a water (W) spray to reduce STEC populations. Four carcass contamination scenarios, representing potential points whereby STEC could come into contact with raw beef surfaces during slaughter operations, were evaluated: (A) pre-rigor surface STEC inoculated (ca. 7 log cfu/cm[superscript]2), 30-min ambient temperature attachment, spray with LA or W; (B) pre-rigor inoculated, 24-h chilled attachment, spray; (C) tissue chilled 24 h, inoculated, 30-min attachment, spray; and (D) tissue chilled 24 h, rewarmed to 30°C, inoculated, 30-min attachment, spray. Predominantly lean muscle and adipose tissue were collected from four fed cattle immediately after harvest and assigned to the four scenarios for STEC inoculation, followed by a post-inoculation water (control) or LA spray. Tissue excision samples were collected pre- and post-treatment and analyzed to enumerate STEC-7 populations. Data were collected in a completely randomized design and analyzed using a mixed-model ANOVA. Pairwise comparisons of treatment means were made at α = 0.05 with p-values adjusted using Tukey-Kramer. Initial STEC attachment levels to predominantly lean muscle and adipose tissues were not significantly different across all scenarios. Scenarios C and D showed greater STEC attachment compared to scenarios B and A. The LA spray reduced STEC levels more effectively than water across all scenarios. A significant treatment by tissue type interaction was observed for STEC reductions. A greater STEC reduction was observed for adipose tissue than for predominantly lean muscle when lactic acid spray was applied. A significant treatment by scenario interaction was observed for STEC reductions. Scenarios A and B presented greater log reductions (1.77 ± 0.27 and 1.85 ± 0.25 log CFU/cm[superscript]2, respectively) than scenario C (1.04 ± 0.10 Log CFU/cm[superscript]2). LA spray presented the same level of effectiveness when applied to pre-rigor warm tissues and chilled tissues for reducing STEC. Greater post-LA spray reductions were observed when STECs were inoculated onto pre-rigor meat surfaces and submitted to a 24 h chill cycle, suggesting that cold storage temperatures (~2 °C) may stress or injure the STEC cells prior to subsequent antimicrobial spray applications to chilled surfaces. For laboratory studies, consideration must be given to when inocula are applied to tissue surfaces to accurately determine and/or compare the effectiveness of antimicrobial treatments. These findings provide insight to beef processors and researchers regarding inoculation protocols for comparative validation studies, and potential impacts on microbiological results from application of antimicrobial interventions at different points during raw beef processing.

Master of Science / Grain Science and Industry / Cassandra K. Jones / Feed mill biosecurity is a growing concern for the feed industries, especially since the entry of Porcine Epidemic Diarrhea Virus (PEDV) to the United States. Porcine Epidemic Diarrhea Virus (PEDV) is primarily transmitted by fecal-oral contamination. However, research has confirmed swine feed and ingredients as potential vectors of transmission, so strategies are needed to mitigate PEDV in feed. The objective of the first experiment was to evaluate the effectiveness of various chemical additives to prevent or mitigate PEDV in swine feed and ingredients that had been contaminated post-processing. Time, formaldehyde, medium chain fatty acids, essential oils, and organic acids all enhance the degradation of PEDV RNA in swine feed and ingredients, but their effectiveness varies within matrix. Notably, the medium chain fatty acids were equally as successful at mitigating PEDV as a commercially-available formaldehyde product. Salmonella is also another potential feed safety hazard in animal feed ingredients. Thermal mitigation of Salmonella in ingredients and feed manufacturing is effective, but it does not eliminate the potential for cross contamination. Therefore, the objective of the second experiment was to evaluate the effectiveness of chemicals to mitigate Salmonella cross-contamination in rendered proteins over time. Both chemical treatment and time reduced Salmonella concentrations, but their effectiveness was again matrix dependent. Chemical treatment with medium chain fatty acids or a commercial formaldehyde product was most effective at mitigating Salmonella in rendered protein meals. The final experiment was conducted to evaluate the effectiveness of a dry granular acid, sodium bisulfate (SBS; Jones-Hamilton, Co., Waldridge, OH), to mitigate contamination of Salmonella in poultry feed. A surrogate organism, Enterococcus faecium, was utilized for this research in order to evaluate the effectiveness of SBS. Thermal processing, SBS concentration, and time all impacted biological pathogen levels in poultry diets, and including a dry granular acid may be an effective method to reduce pathogen risk. However, the most significant reduction of Enterococcus faecium was due to thermal mitigation. Notably, pelleting reduced Enterococcus faecium by 2-3 logs on day 0. In summary, both thermal processing and chemical inclusion can be used to reduce the risk of microbial pathogens in feed.

Master of Science / Animal Sciences and Industry / John R. Jaeger / Cattle consuming low-protein forage (<7% CP) require additional supplemental protein to maintain BW and BCS. Daily delivery of protein supplements places undue financial burden on cattle producers. Supplementing cows as infrequently as once every 6 d) has resulted in similar changes cow BW and BCS when compared to daily supplementation. As calving season nears, producers may wish to increase supplementation frequency. The responses to a change in supplementation frequency during the third trimester of gestation have not been widely investigated. Therefore, our objective in Study 1 was to evaluate the effect of altering supplementation frequency during late gestation on performance of spring-calving cows grazing low-quality, dormant native range and supplemented with dried distillers grains with solubles (DDG). Angus × cows (n = 238; mean age = 6 ± 2.5 yr; average initial BW = 618 ± 56.2 kg; average initial BCS = 5.7 ± 0.03) were stratified by age, BW, BCS, and assigned randomly to 1 of 4 treatments: 1) DDG daily (D1); 2) DDG once every 6 d (D6); 3) DDG daily from d 1 to d 60 and then every 6 d (D1-D6); 4) DDG every 6 d from d 1 to d 60 and then daily (D6-D1). Treatments were initiated 100 d prior to expected onset of calving. Cow BW and BCS were measured every 28 d. Cows were sorted daily before supplementation at 0830 h. Supplement delivery was calculated to meet dietary CP requirements. Increasing supplementation frequency 28 d prepartum negatively affected final BW and BW change from d 61-88 for the D6-D1 supplementation group (P < 0.05) compared to other supplementation groups. Cow BW change for the study (d 1-88) was also less (P < 0.02) for the D6-D1 group compared to other groups but was also affected (P < 0.01) by year. Under the conditions of our study, increasing supplementation frequency 28 d before calving was not a viable means of increasing prepartum cow performance. The development of replacement heifers is a significant expense for cow-calf producers. Reducing the cost of heifer development programs while achieving high pregnancy rates is an industry-wide goal. Therefore, our objective in Study 2 was to determine if DDGS was a viable replacement for an oilseed meal-based protein supplement when developing heifers on low-quality, dormant native range. Treatments consisted of daily supplementation of either 1.65 kg DM DDG (DDG; 0.57 kg CP) or 1.37 kg DM of a 73.6% soybean meal and 26.4% rolled sorghum grain mixture (SBM-S; 0.56 kg CP). Treatments were administered from 1/15 until 4/8 (84 d). Initial BW and BCS were not different between treatments (P ≥ 0.29). Final BW and BCS also did not differ (P ≥ 0.55) between treatments; moreover, rates of BW and BCS change were not different (P ˃ 0.30) between treatments. Proportions of heifers pubertal before ovulation synchronization, first service conception rates, and final pregnancy rates were not affected (P > 0.40) by treatment. Under the conditions of our study supplemental CP fed at a rate of approximately 0.56 kg daily was sufficient to promote growth and BCS change adequate for optimal reproductive performance; moreover, supplement ruminal degradability of CP did not influence heifer performance over an 84-d development period.

Master of Science / Grain Science and Industry / Greg Aldrich / Rendered protein meal is an important source of dietary protein and fat in pet food. However, fats in rendered meals can oxidize rapidly if not protected. The most common measurement of oxidation is the peroxide value (PV), but the analysis is highly variable. Additionally, the incorporation of oxidized protein further shortens its shelf life. Therefore, our objectives were to evaluate methods to measure fat quality in rendered protein meals and to determine the effect of increasingly oxidized protein meals on the shelf life of extruded pet foods. In Experiment 1, samples of five chicken byproduct meals (CBPM) from each of three locations and five beef meat and bone meals (BMBM) from each of two locations were analyzed for PV, anisidine value (AV), and thiobarbituric acid reactive substances (TBARS). The PV varied by method and location (P < 0.05). The alternative oxidation analytical methods, AV and TBARS, were not strongly correlated to PV (R² > 0.01). In Experiment 2, one metric ton of each unpreserved CBPM and unpreserved BMBM were collected and left unpreserved (U) or preserved with either ethoxyquin (E) or mixed tocopherols (T). These were held at ambient conditions (25°C, 51% RH) and monitored for PV and AV until values plateaued (41 and 63 days for CBPM and BMBM, respectively). Each “aged” meal was then incorporated into a model extruded cat food diet (~30% protein). Samples of kibble for each treatment were collected and stored at an elevated temperature and humidity (40°C, 70% RH) for 18 weeks and an ambient temperature and humidity (~22°C, 45% RH) for 12 months. The initial reduction (P < 0.05) in PV of the U (highly oxidized) BMBM and CBPM after processing suggests oxidation levels were diluted by food production. The oxidized meal led to a shorter shelf life (P < 0.05) in the finished food by PV analysis; but, sensory analysis by quick assessment did not completely corroborate these findings. These results suggest that PV doesn’t fully describe rendered protein meal stability or have a direct impact on shelf life for consumers; but may have a negative impact on pets due to oxidized lipid consumption.

Master of Science / Agricultural Economics / John A. Fox / This study examines consumer acceptance of omega-3 enhanced beef using data from a choice experiment and a retail trial. The retail trial was conducted in collaboration with La Vaca Meat Company, Littleton, CO which offered omega-3 enhanced beef products for sale both online and in-store. Prices were adjusted periodically, and online customers were surveyed to gather information about their purchase decisions. The choice experiment was included in an online survey conducted with a nationally representative sample of consumers. One version of the survey focused on ground beef and another focused on steak. Within each version separate treatments examined the impact of providing information about how levels of the most beneficial omega-3s could be enhanced in beef. The choice experiment evaluated how variation in meat attributes such as omega-3 content, safety, and tenderness influenced purchase decisions. Data from the choice experiment were analyzed using multinomial logit models. Results indicate that overall acceptance and willingness to pay for omega-3 enhanced beef was below that of grass-fed beef. Additional information about omega-3s increased willingness-to-pay for enhanced omega ground beef, but had no impact on willingness-to-pay for enhanced omega steak. The analysis showed significant heterogeneity in preferences, and, in particular, females had significantly higher willingness-to-pay for grass-fed ground beef than males. Average willingness-to-pay for grass-fed steak was estimated at $3.69/lb above conventionally raised product, compared to an estimated premium of $1.86/lb for enhanced omega steak. For ground beef the average premium for grass-fed product was estimated to be $1.27/lb compared to $0.79/lb for the enhanced omega product.

Doctor of Philosophy / Animal Sciences and Industry / Michael D. Tokach / Three experiments using 2,385 pre-weaned pigs, growing pigs, and sows were performed in addition to a meta-analysis and industry survey. Experiment 1 tested the effects of sow vitamin D supplementation from vitamin D₃ (low, medium, or high) or 25OHD₃ (same IU equivalency as the medium level of vitamin D₃) on maternal performance, neonatal pig bone and muscle characteristics, subsequent pre-weaned pig performance and serum 25OHD₃ with only differences in serum 25OHD₃ being impacted. In the second experiment a subsample of pigs weaned from the maternal portion of the study were used in a split-plot design and fed 2 different forms of vitamin D in the nursery and growth performance was evaluated until the pigs reached market weight. Overall, the nursery vitamin D treatments did not impact growth; however, pigs from sows fed the medium level of vitamin D₃ performed better after weaning compared to pigs from sows fed the low or the high level of vitamin D₃, and serum 25OHD₃ was altered based on maternal and nursery vitamin D supplementation. In the third experiment, finishing pigs were initially provided 2 different floor space allowances (0.64 or 0.91 m²) and pigs initially provided 0.64 m² were subject to 1 of 3 marketing strategies which removed the heaviest pigs from the pen in order to provide additional floor space to the pigs remaining in the pen. Overall, pigs initially provided more floor space had improved ADG and ADFI, but increasing the number of marketing events increased ADG of the pigs remaining in the pen following market events. The meta-analysis suggested that a multi-term empirical model using random effects to account for known error and weighted observations to account for heterogeneous experimental designs and replication provided models that best fit the database. Also, the meta-analysis concluded that floor space allowance does influence ADG, ADFI, and G:F and BW of the pig can alter the floor space response. Finally, the vitamin and trace mineral survey suggested that a wide range of supplementation practices are used in the swine industry but most production systems supplement micronutrients above the basal requirement estimates of the animals.