Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2012. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Radioactive isotopes can be used in paleoceanography both for dating samples and as tracers of ocean processes. Here I use radiocarbon and uranium series isotopes to investigate the ocean's role in climate change over the last deglaciation. I present a new method for rapid radiocarbon analyses as a means of age-screening deep-sea corals for further study. Based on age survey results, I selected forty corals from the Drake Passage and thirteen from the Reykjanes Ridge off Iceland and dated them with uranium series isotopes. The uranium series dates give independent ages that allow radiocarbon to be used as a tracer of circulation and carbon cycle changes. The radiocarbon records generated from the Drake Passage corals show increased stratification in the Southern Ocean during the last glacial maximum (LGM) that disappeared during the start of the deglaciation as atmospheric CO2 began to rise during Heinrich Stadial 1 (HI). Considering these data and using a simple mass budget calculation, I show that the drop in atmospheric radiocarbon activity during H1 can be explained given direct carbon exchange between the radiocarbon-depleted deep ocean and atmosphere, e.g. through the Southern Ocean. The Drake Passage radiocarbon records also show evidence for decreased air-sea gas exchange in the Southern Ocean during the Antarctic Cold Reversal/Belling-Allered coincident with the hiatus in the deglacial CO2 rise. During this time period in the North Atlantic, radiocarbon reconstructions from deep-sea corals collected from off Iceland show a similar ventilation rate to that observed today and during the Holocene. To further investigate changes in North Atlantic ventilation over the last deglaciation, I used an inverse model to assess the consistency of sedimentary 2m1 Pa/ 230Th ratios from the Holocene, Hl, and the LGM with the modern circulation. Although sedimentary 231Pa/230Th has been used to infer changes in the strength of the meridional overturning circulation in the past, I find that published data are consistent with the modern circulation during the LGM and Hi. These findings highlight the importance of giving due regard to the uncertainties in the behavior and spatial distribution of paleoceanographic tracers. / by Andrea Burke. / Ph.D.

Includes bibliographical references (p. 211-216). / Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2008. / Inspired by the swimming abilities of marine animals, this thesis presents "Finnegan the RoboTurtle", an autonomous underwater vehicle (AUV) powered entirely by four flapping foils. Biomimetic actuation is shown to produce dramatic improvements in AUV maneuvering at cruising speeds, while simultaneously allowing for agility at low speeds. Using control algorithms linear in the modified Rodrigues parameters to support large angle maneuvers, the vehicle is successfully controlled in banked and twisting turns, exceeding the best reported AUV turning performance by more than a factor of two; a minimum turning radius of 0.7BL, and the ability to avoid walls detected > 1.8BL ahead, are found for cruising speeds of 0.75BL/s, with a maximum heading rate of 400/s recorded. Observations of "Myrtle", a 250kg Green sea turtle (Chelonia mydas) at the New England Aquarium, are detailed; along with steady swimming, Myrtle is observed performing 1800 level turns and rapidly actuating pitch to control depth and speed. Limb kinematics for the level turning maneuver are replicated by Finnegan, and turning rates comparable to those of the turtle are achieved. Foil kinematics which produce approximately sinusoidal nominal angle of attack trace are shown to improve turning performance by as much as 25%; the effect is achieved despite limited knowledge of the flow field. Finally, tests with a single foil are used to demonstrate that biomimetically inspired inline motion can allow oscillating foils utilizing a power/recovery style stroke to generate as much as 90% of the thrust from a power/power stroke style motion. / by Stephen Carl Licht. / Ph.D.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2003. / In title on t.p., "[Beta]" appears as the Greek letter. / Includes bibliographical references (p. 81-84). / by Shinichiro Kida. / S.M.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2013. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Predicting the response of net community calcification (NCC) to ocean acidification OA and declining aragonite saturation state [Omega]a requires a thorough understanding of controls on NCC. The diurnal control of light and net community production (NCP) on NCC confounds the underlying control of [Omega]a on NCC and must be averaged out in order to predict the general response of NCC to OA. I did this by generating a general NCC-[Omega]a correlation based on data from 15 field and mesocosm studies around the globe. The general relationship agrees well with results from mesocosm experiments. This general relationship implies that NCC will transition from net calcification to net dissolution at a [Omega]a of 1.0 ± 0.6 and predicts that NCC will decline by 50% from 1880 to 2100, for a reef of any percent calcifier cover and short reef water residence time. NCC will also decline if percent calcifier cover declines, as evidenced by estimates of NCC in two Caribbean reefs having declined by an estimated 50-90% since 1880. The general NCC-([Omega]a relationship determined here, along with changes in percent calcifier cover, will be useful in predicting changes in NCC in response to OA and for refining models of reef water [Omega]a. / by Whitney Nicole Bernstein. / Ph.D.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Mechanical Engineering; and the Woods Hole Oceanographic Institution), September 2011. / "September 2011." "©2011"--P. 2. Cataloged from PDF version of thesis. / Includes bibliographical references (p. 97-101). / The ocean depths provide an ever changing and complex imaging environment. As scientists and researches strive to document and study more remote and optically challenging areas, specifically scatter-limited environments. There is a requirement for new illumination systems that improve both image quality and increase imaging distance. One of the most constraining optical properties to underwater image quality are scattering caused by ocean chemistry and entrained organic material. By reducing the size of the scatter interaction volume, one can immediately improve both the focus (forward scatter limited) and contrast (backscatter limited) of underwater images. This thesis describes a relatively simple, cost-effective and field-deployable low-power dynamic lighting system that minimizes the scatter interaction volume with both subjective and quantifiable improvements in imaging performance. / by Geoffrey Allen Gorman. / S.M.

Thesis (S.M.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science; and the Woods Hole Oceanographic Institution), 2002. / Includes bibliographical references (p. 151-154). / by Rajesh Rao Naduditi. / S.M.

This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections. / Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Biology; and the Woods Hole Oceanographic Institution), 2019 / Cataloged from student-submitted PDF version of thesis. / Includes bibliographical references. / Harmful algal blooms (HABs) can produce potent neurotoxins that accumulate in seafood and affect human health. One HAB toxin of concern is domoic acid (DomA), a glutamate analog produced by the marine diatom Pseudo-nitzschia spp. Current regulatory limits are designed to prevent acute neurotoxicity in adult humans. However, research shows that low-level exposure during early life can lead to long-term changes in behavior, neural connectivity, and brain morphology. To determine the underlying mechanisms of developmental toxicity, this dissertation used zebrafish as a tool to: i) Establish the developmental window of susceptibility for DomA toxicity, ii) Characterize the behavioral consequences of exposures, and iii) Identify the cellular targets and processes perturbed by DomA. I found that DomA exposure particularly at 2 days post fertilization (dpf) led to altered startle response behavior, myelination defects, and the downregulation of axonal and myelin structural genes. / Using vital dyes and immunolabeling, I assessed DomA-induced alterations in cells required for the startle response. I found no differences in the number of sensory neuromasts or in the sensory cranial ganglia structures that detect the acoustic stimuli. However, the majority of DomA-treated larvae lacked one or both Mauthner cells - hindbrain neurons critical for fast startle responses. DomA-treated larvae also had oligodendrocytes with fewer and shorter myelin sheaths, and appeared to aberrantly myelinate neuronal cell bodies. The loss of the Mauthner neurons and their axons may lead to a cellular environment where oligodendrocytes myelinate neuronal cell bodies in the absence of adequate axonal targets. Indeed, pharmacological treatment that reduced the oligodendrocyte number also led to the reduction in the number of these aberrant, myelinated cell bodies. / These results indicate that exposure to DomA at a particular period in neural development targets specific cell types, disrupts myelination in the spinal cord, and leads to prolonged behavioral deficits. These mechanistic insights support hazard assessments of DomA exposures in humans during critical periods in early development. / "Funding for my research came from the Ocean Ventures Fund, Hill family foundation, Woods Hole Sea grant NA14OAR4170074, and the Woods Hole Center for Oceans and Human Health (COHH), which is jointly funded by the National Institutes of Health (P01ES02192, P01ES028938), and the National Science Foundation (OCE-1314642, OCE-1840381). My funding came from the National Institutes of Health (NIH) P01ES021923-04S1, the Ocean Ridge Initiative Fellowship, the Von Damm Fellowship, and the MIT/WHOI Joint Program Academic Programs Office"--Page 5 / by Jennifer Martinez Panlilio. / Ph. D. / Ph.D. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Biology; and the Woods Hole Oceanographic Institution)

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2019 / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 193-220). / Southern Ocean net community productivity plays an out sized role in regulating global biogeochemical cycling and climate dynamics. The structure of spatial-temporal variability in phytoplankton ecosystem dynamics is largely governed by physical processes but a variety of competing pathways complicate our understanding of how exactly they drive net population growth. Here, I leverage two coupled, 3-dimensional, global, numerical simulations in conjunction with remote sensing data and past observations, to improve our mechanistic understanding of how physical processes drive biology in the Southern Ocean. In Chapter 2, I show how different mechanistic pathways can control population dynamics from the bottom-up (via light, nutrients), as well as the top-down (via grazing pressure). In Chapters 3 and 4, I employ a higher resolution, eddy resolving, integration to explicitly track and examine closed eddy structures and address how they modify biomass at the mesoscale. / Chapter 3 considers how simulated eddies drive bottom-up controls on phytoplankton growth and finds that division rates are, on average, amplified in anticyclones and suppressed in cyclones. Anomalous division rates are predominately fueled by an anomalous vertical iron flux driven by eddy-induced Ekman Pumping. Chapter 4 goes on to describe how anomalous division rates combine with anomalous loss rates to drive anomalous net population growth. Biological rate-based mechanisms are then compared to the potential for anomalies to evolve strictly via physical transport (i.e. dilution, stirring, advection). All together, I identify and describe dramatic regional and seasonal variability in when, where, and how different mechanisms drive phytoplankton growth throughout the Southern Ocean. Better understanding this variability has broad implications to our understanding of how oceanic biogeochemisty will respond to, and likely feedback into, a changing climate. / Specifically, the uncertainty associated with this variability should temper recent proposals to artificially stimulate net primary production and the biological pump via iron fertilization. In Chapter 5 I argue that Southern Ocean Iron Fertilization fails to meet the basic tenets required for adoption into any regulatory market based framework. / by Tyler W. Rohr. / Ph. D. / Ph.D. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2019 / Cataloged from PDF version of thesis. "The pagination in this thesis reflects how it was delivered to the Institute Archives and Special Collections. TOC pagination for Bibliography section is off by one page"--Disclaimer Notice page. / Includes bibliographical references (pages 115-123). / Submesoscale currents, with horizontal length scales of 1-20 km, are an important element of upper ocean dynamics. These currents play a crucial role in the horizontal and vertical redistribution of tracers, the cascade of tracer variance to smaller scales, and in linking the mesoscale circulation with the dissipative scales. This thesis investigates submesoscale flows and their properties using Lagrangian trajectories of observed and modeled drifters. We analyze statistics of observed drifter pairs to characterize turbulent dispersion at submeso-scales. Contrary to theoretical expectations, we find that nonlocal velocity gradients associated with mesoscale eddies dominate the separation of drifters even at the kilometer scale. At submeso-scales, we observe energetic motions, such as near-inertial oscillations, that contribute to the energy spectrum but are inefficient at dispersion. / Using trajectories in a model of submesoscale turbulence, we find that, if drifters have a vertical separation, vertical shear dominates the dispersion and conceals horizontal dispersion regimes from drifter observations. Particularly in submesoscale flows, vertical shear is orders of magnitude larger than horizontal gradients in velocity. Since conventional drifters in the ocean are not affected by vertical shear, it is likely that drifter-derived diffusivity underestimates the diffusivity that a tracer would experience. Lastly, we test and apply cluster-based methods, using three or more drifters, to estimate the velocity gradient tensor. Since velocity gradients become large at submesoscales, the divergence, strain, and vorticity control the evolution and deformation of clusters of drifters. Observing the velocity gradients using drifters, enables us to further constrain the governing dynamics and decipher submesoscale motions from inertia-gravity waves. / These insights provide a Lagrangian perspective on submesoscale flows that illuminates scales that are challenging to observe from other platforms. We reveal observational and theoretical challenges that need to be overcome in future investigations. / "Funded by the National Science Foundation (OCE-I434788) and the Office of Naval Research (N00014-13-1-0451, Grant N00014-16-1-2470)"--Page 5 / by Sebastian Essink. / Ph. D. / Ph.D. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2019 / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 113-121). / Submesoscale ocean dynamics and instabilities, with characteristic scales 0.1-10 kin, can play a critical role in setting the ocean's surface boundary layer thickness and associated density stratification. Submesoscale instabilities contribute to lateral stirring and tracer dispersal. These dynamics are investigated in the Bay of Bengal, motivated by the upper ocean's potentially coupled interactions with Monsoon winds and convection. The region's excess precipitation and runoff generates strong salinity gradients that typically set density fronts and stratification in the upper 50 m. Since we cannot synoptically measure currents containing fast-evolving and oscillating components across the submesoscale range, we instead analyze passive tracer distributions (spice = density-compensated temperature (T) and salinity (S) anomalies), identifying signatures of flows and testing dynamical theories. / The analysis is based on over 9000 vertical profiles of T and S measured along ~4800 km of ship tracks in the Bay of Bengal during ASIRI and MISO-BOB expeditions in 2013, 2015, and 2018. Observations in the surface mixed layer reveal ~1 km scale-selective correlation of surface T and S, with compensation reducing cross-front density gradients by ~50%. Using a process study ocean model, we show this is caused by submesoscale instabilities slumping fronts, plus surface cooling over the resultant enhanced salinity stratification, potentially thwarting the forward cascade of energy. In the stratified interior, we present a spectral analysis of horizontal spice variance statistics from wavenumber k ~0.01 cpkm to ~1 cpkm. At scales <10 km, stratified layers that are closer to the surface exhibit redder passive tracer spectra (power spectra k⁻³, gradient spectra k⁻¹) than predicted by quasi-geostrophic or frontogenetic theories. / Complimentary observations reveal spice patterns with multiple, parallel, ~10 m thin layers, crossing isopycnals with O(10⁻⁴) slopes, coherent over at least 30-80 kin, with coincident layers of stratification anomalies. Comparison with shear measurements, and a numerical process study, suggest that both submesoscale sheared eddies, and thin near-inertial waves, form such layers. Fast formation timescales and large aspect ratios suggest they enhance horizontal mixing by shear dispersion, reducing variance at ~1-10 km scales. / by Gualtiero Victor Rudi Spiro Jaeger. / Ph. D. / Ph.D. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)