Active galactic nuclei (AGN) are known to vary in brightness in all regions of the electromagnetic spectrum and over a wide range of timescales. Many methods have been utilized to transform this observed variability into meaningful information about the central engines of AGN. One such technique, adapted from time series analysis of galactic x-ray binary systems, has been used to detect a characteristic break timescale in the power density spectra of x-ray variability in Seyfert galaxies. This timescale, thought to be related to instabilities in the accretion disk, appears to scale with black hole mass over many orders of magnitude. This dissertation performs similar time series analyses with the optical data of eight blazars. The majority of these objects also display a characteristic break timescale. In cases where a black hole estimate is known, the timescales are in good agreement with the relationship observed for galactic x-ray binary systems and Seyfert galaxies. For objects of unknown mass, this relationship can be used to provide a mass estimate of the supermassive black hole. Comparisons are made between the structure function and power density spectrum for each object, and the implications for the connection between the accretion disk and the relativistic jet in AGN are discussed.

Over the past half century, multiplicity studies have provided a foundation for the theories of stellar formation and evolution through understanding how likely it is that stars form alone or with companions. If spectroscopic orbits are combined with techniques that can determine visual orbits, we can access the most fundamental parameter of stellar evolution, stellar mass. This dissertation is composed of two main sections. The first involves the investigation of the seminal multiplicity study of Duquennoy & Mayor (1991b) which has been the ``gold standard" for solar-type stars for nearly 20 years. Improvements in technology in the intervening years have improved the measurement accuracy for radial velocities and distances on which the study was based. Using Georgia State University's CHARA Array to search the systems in Duquennoy & Mayor's multiplicity survey for overlooked companions along with a literature search covering regimes unreachable by the CHARA Array, we have found that more than 40% of the Duquennoy & Mayor's sample was further than originally believed and the uncorrected multiplicity percentages change from 57:38:4:1:0% (single:double:triple:quad:quint%) to 48:42.5:7.5:1:1% with the discoveries of multiple previously undiscovered companions. The second part of this project describes the application of separated fringe packets for resolving the astrometric position of secondaries with small angular separations on long-baseline optical interferometers. The longest baselines of the CHARA Array allow access to a previously inaccessible range of separations compared with other techniques (<40 milliarcseconds) and the ability to very accurately angularly resolve a large number of single- and double-lined spectroscopic binaries. Combining astrometric and spectroscopic orbits provides assumption-free stellar masses and using the CHARA Array allows access to many previously unreachable systems available for high-accuracy mass determinations. We report the first angular separation measurements of seven spectroscopic binary systems, five additional separated fringe packet detections, ten systems with probably overlapping fringe packets, four systems with new data on pre-existing orbits, one completely new visual orbit for a SB2 system previously unresolved, and the detection of two previously unknown companions.

A measurement of J/\Psi polarization has been performed for 200 GeV proton+proton collisions with the PHENIX Muon Arms at RHIC. The results from the current data show no polarization within the PHENIX acceptance range. The results are consistent with the current model predictions and other experimental measurements.

For the main part of this dissertation, I have executed a survey of nearby, main sequence A, F, and G-type stars with the CHARA Array, successfully measuring the angular diameters of forty-four stars to better than 4% accuracy. The results of these observations also yield empirical determinations of stellar linear radii and effective temperatures for the stars observed. In addition, these CHARA-determined temperatures, radii, and luminosities are fit to Yonsei-Yale isochrones to constrain the masses and ages of the stars. These quantities are compared to the results found in Allende Prieto & Lambert (1999), Holmberg et al. (2007), and Takeda (2007), who indirectly determine these same properties by fitting models to observed photometry. I find that for most cases, the models underestimate the radius of the star by ~12%, while in turn they overestimate the effective temperature by ~ 1.5 - 4%, when compared to my directly measured values, with no apparent correlation to the star's metallicity or color index. These overestimated temperatures and underestimated radii in these works appear to cause an additional offset in the star's surface gravity measurements, which consequently yield higher masses and younger ages, in particular for stars with masses greater than ~ 1.3 M_sol. Alternatively, these quantities I measure are also compared to direct measurements from a large sample of eclipsing binary stars in Andersen (1991), and excellent agreement is seen within both data sets. Finally, a multi-parameter solution is found to fit color-temperature-metallicity values of the stars in this sample to provide a new calibration of the effective temperature scale for these types of stars. Published work in the field of stellar interferometry and optical spectroscopy of early-type stars are presented in Appendix D and E, respectively.

We focus on determining the underlying physical cause of a Seyfert galaxy's appearance as type a 1.8 or 1.9. Are these "intermediate" Seyfert types typical Seyfert 1 nuclei reddened by central dusty tori or by nuclear dust lanes/spirals in the narrow-line region? Or, are they similar to NGC 2992, objects that have intrinsically weak continua and weak broad emission lines? Our study compares measurements of the reddenings of the narrow and broad-line regions with each other and with the X-ray column derived from XMM Newton 0.5-10 keV spectra to determine the presence and location of dust in the line of sight for a sample of 35 Seyfert 1.8s and 1.9s. From this, we find that Seyfert 1.9s are an almost equal mix of low-flux objects with unreddened broad line regions, and objects with broad line regions reddened by an internal dust source, either the torus or dust structures on the same size scale as the narrow line region. The 1.9s that recieved this designation due to a low continuum flux state showed variable type classifications. All three of the Seyfert 1.8s in our study are probably in low continuum states. Many objects have been misclassified as Seyfert 1.8/1.9s in the past, probably due to improper [N II]/H-alpha deconvolution leading to a false detection of weak broad H-alpha.

The photoionization of the beryllium-like isoelectronic series has been studied. The bound state wave functions of the target ions were built with CIV3 program. The relativistic Breit-Pauli R-matrix method was used to calculate the cross sections in the photon energy range between the ionization threshold and 1s24f7/2 threshold for each ion. For the total cross sections of Be, B+, C+2, N+3, and O+4, our results match experiment well. The comparison between the present work and other theoretical works are also discussed. We show the comparison with our LS results as it indicates the importance of relativistic effects on different ions. In the analysis, the resonances converging to 1s22lj and 1s23lj were identified and characterized with quantum defects, energies and widths using the eigenphase sum methodology. We summarize the general appearance of resonances along the resonance series and along the isoelectronic sequence. Partial cross sections are also reported systematically along the sequence. All calculations were performed on the NERSC system.

This research focuses on the nanoscopic investigation of the three-dimensional surface morphology of the neural growth cones from the snail Helisoma trivolvis, and InN and InGaN semiconductor material systems using Atomic Force Microscopy (AFM). In the analysis of the growth cones, the results obtained from AFM experiments have been used to construct a 3D architecture model for filopodia. The filopodia from B5 and B19 neurons have exhibited different tapering mechanisms. The volumetric analysis has been used to estimate free Ca2+ concentration in the filopodium. The Phase Contrast Microscopy (PCM) images of the growth cones have been corrected to thickness provided by AFM in order to analyze the spatial refractive index variations in the growth cone. AFM experiments have been carried out on InN and InGaN epilayers. Ternary InGaN alloys are promising for device applications tunable from ultraviolet (Eg[GaN]=3.4 eV) to near-infrared (Eg [InN]=0.7 eV). The real-time optical characteristics and ex-situ material properties of InGaN epilayers have been analyzed and compared to the surface morphological properties in order to investigate the relation between the growth conditions and overall physical properties. The effects of composition, group V/III molar ratio and temperature on the InGaN material characteristics have been studied and the growth of high quality indium-rich InGaN epilayers are demonstrated.

Photoionization cross section calculations are performed for the ground ([Ne]3s23p63d 2D ) and the first two excited ([Ne]3s23p63d 2D and [Ne]3s23p64s 2S ) states of potassium-like transition metal ions (Sc+2, Ti+3, V+4, Cr+5, Mn+6, Fe+7), along with photoionization calculations for K-like Ca+ ions in the ground ([Ne]3s23p64s 2S ) state and the first two excited ([Ne]3s23p63d 2D and [Ne]3s23p63d 2D ) states. The discrete N-electron final state ion system orbitals are generated using the computer program AUTOSTRUCTURE; 24 configurations are included in the configuration-interaction (CI) calculation for transition metal ions, and 30 configurations for the case of Ca+ ions. The initial and final (N+1)-electron wavefunctions are generated using R-matrix along with photoionization cross sections. In addition to the non-relativistic (LS-coupling) R-matrix, we have used the relativistic (Breit-Pauli) R -matrix method to carry out these calculations to focus on relativistic effects. Relativistic and non-relativistic results are compared to demonstrate the influence of relativistic effects. The prominent 3p → 3d giant resonances are analyzed and identified, and our calculated positions and widths are compared with experimental results for K-like ions such as Ca+, Sc+2 and Ti+3. In the case of lower Z (22  Z  20) ions (Ca+, Sc+2 and Ti+3), the photoionization cross section spectra are dominated by the giant (3p  3d excitation) resonances, while in cases of higher Z (26  Z  23) ions (V+4, Cr+5, Mn+6 and Fe+7), the 3p  3d resonances lie below the ionization threshold, and the cross sections are dominated by 3p53d nd and 3p53d n’s Rydberg series of resonances. Comparison of the Ca+, Sc+2 and Ti3+ results with available theoretical and experimental data shows good agreement.

Fourier transform infrared (FTIR) microscopy has shown promise as an analytical tool for detecting changes in cells and tissues, such as those due to viral infection, apoptosis induction or malignancy. In many cases, diagnosis via FTIR microscopy can be undertaken on a timescale shorter than that required for other physical or histological techniques. In this work we have used FTIR microscopy to study Vero cells that have been infected with herpes simplex virus (type I) and adenovirus. We have studied cellular samples at various time intervals following exposure to the virus. Several spectral regions were identified that allow discrimination between infected and uninfected Vero cell samples at 24 hours post exposure to both HSV1 and adenovirus. Spectral features were also identified that could be used to discriminate infected cells within 2-6 hours after exposure to both viruses. FTIR microscopy is therefore a useful tool for following the kinetics of viral infection in the 2-24 hours time range, at least at the levels of infection used in this study. In a second type of study, FTIR microscopy was used to study apoptosis induction in acute lymphoblastic leukemia T-cells. Apoptosis was induced in T-cells in three different ways. We show that FTIR microscopy can be used to distinguish T-cells in the early stages of apoptosis from normal cells. We also provide data that may suggest that FTIR microscopy can distinguish cells that have undergone apoptosis via different pathways. For most of the FTIR microscopic studies on cellular samples we have focused on the collection of spectral data in the 1500-800 cm-1 region. Spectra were collected for control cells and variously treated cells. The two sets of cells were then analyzed statistically using: 1) pair-wise comparison, 2) logistic regression, 3) partial least square regression, 4) principle component fed linear discriminant analysis and 5) hierarchical cluster analysis. The statistical analyses rigorously quantify to what extent treated and untreated cells can be distinguished. Since different statistical methods give differing results for the same data, it is important the right statistical method should be applied. The basis for these differences is discussed.

The self-calibration method, a new interferometric technique using measurements in the K′-band (2.1 μm) at the CHARA Array, has been used to derive orbits for several spectroscopic binaries. This method uses the wide component of a hierarchical triple system to calibrate visibility measurements of the triple’s close binary system through quasi-simultaneous observations of the separated fringe packets of both. Prior to the onset of this project, the reduction of separated fringe packet data had never included the goal of deriving visibilities for both fringe packets, so new data reduction software has been written. Visibilities obtained with separated fringe packet data for the target close binary are run through both Monte Carlo simulations and grid search programs in order to determine the best-fit orbital elements of the close binary. Several targets, with spectral types ranging from O to G and luminosity classesfrom III to V, have been observed in this fashion, and orbits have been derived for the close binaries of eight targets (V819 Her B, Kappa Peg B, Eta Vir A, Eta Ori Aab, 55 UMa A, 13 Ceti A, CHARA 96 Ab, HD 129132 Aa). The derivation of an orbit has allowed for the calculation of the masses of the components in these systems. The magnitude differences between the components can also be derived, provided that the components of the close binary have a magnitude difference of Delta K < 2.5 (CHARA’s limit). Derivation of the orbit also allows for the calculation of the mutual inclination (Phi), which is the angle between the planes of the wide and close orbits. According to data from the Multiple Star Catalog, there are 34 triple systems other than the 8 studied here for which the wide and close systems both have visual orbits. Early formation scenarios for multiple systems predict coplanarity (Phi < 15 degrees), but only 6 of these 42 systems are possibly coplanar. This tendency against coplanarity may suggest that the capture method of multiple system formation is more important than previously believed.