Résumé indisponible. / Résumé indisponible.

Bioassay guided fractionation of a crude extract of the marine sponge Neopetrosia exigua resulted in the first reported isolation of exiguamines A and B. These pyrroloquinone alkaloids have an unprecedented hexacyclic skeleton that has not been previously encountered in natural products. Biological studies have identified exiguamine A as a potent in vitro inhibitor of the enzyme indoleamine-2,3-dioxygenase (IDO). IDO is an enzyme expressed by tumor cells to evade the immune system. Inhibitors against this enzyme may allow the immune system to attack cancer cells, making this enzyme a potential drug target for anti-cancer agents. Investigation of the crude extract of a Bacillus sp. collected in Dominica led to the isolation of the known diketopiperazine cyclo(S-Val-S-Phe) (3.9). In vitro biological studies revealed that cyclo(S-Val-S-Phe) is able to promote neurite outgrowth, even in the presence of physiological inhibitors. In vivo studies have shown that cyclo(S-VaI-S-Phe) is able promote sprouting in serotonergic and adrenergic axons. Synthesis of the other three diastereomers led to the discovery that cyclo(R-Val-R-Phe) is also an in vitro activator of axonal outgrowth. Inhibitors of the G2 checkpoint are able to increase the cytotoxicity of DNA damaging chemotherapeutics. Bioassay guided fractionation of an extract of the South American plant Duguetia odorata led to the isolation of the G2 checkpoint abrogator, oliveroline. This investigation also led to the isolation of the previously unreported alkaloid N-methylguatterine, and the known alkaloids dehydrodiscretine and pseudopalmatine. Chemical investigation of the marine sponge Myrmekioderma granulatum led to the isolation of the new compounds abolenone and myrmekioside C, as well as the known compounds curcudiol, curcuphenol, abolene and sesquiterpenoid. Biological studies of these compounds revealed that curcudiol is a ligand of the sex hormone-binding globulin. This protein is involved in transporting and regulating the concentration of steroids such as testosterone and estradiol. Many pathological conditions have a lower plasma concentration of these steroids. Ligands to SHBG can release steroids into the blood, so this protein is a potential drug target to treat conditions where a hormone insufficiency is present.

Bioassay guided fractionation of a crude extract of the marine sponge Neopetrosia exigua resulted in the first reported isolation of exiguamines A and B. These pyrroloquinone alkaloids have an unprecedented hexacyclic skeleton that has not been previously encountered in natural products. Biological studies have identified exiguamine A as a potent in vitro inhibitor of the enzyme indoleamine-2,3-dioxygenase (IDO). IDO is an enzyme expressed by tumor cells to evade the immune system. Inhibitors against this enzyme may allow the immune system to attack cancer cells, making this enzyme a potential drug target for anti-cancer agents. Investigation of the crude extract of a Bacillus sp. collected in Dominica led to the isolation of the known diketopiperazine cyclo(S-Val-S-Phe) (3.9). In vitro biological studies revealed that cyclo(S-Val-S-Phe) is able to promote neurite outgrowth, even in the presence of physiological inhibitors. In vivo studies have shown that cyclo(S-VaI-S-Phe) is able promote sprouting in serotonergic and adrenergic axons. Synthesis of the other three diastereomers led to the discovery that cyclo(R-Val-R-Phe) is also an in vitro activator of axonal outgrowth. Inhibitors of the G2 checkpoint are able to increase the cytotoxicity of DNA damaging chemotherapeutics. Bioassay guided fractionation of an extract of the South American plant Duguetia odorata led to the isolation of the G2 checkpoint abrogator, oliveroline. This investigation also led to the isolation of the previously unreported alkaloid N-methylguatterine, and the known alkaloids dehydrodiscretine and pseudopalmatine. Chemical investigation of the marine sponge Myrmekioderma granulatum led to the isolation of the new compounds abolenone and myrmekioside C, as well as the known compounds curcudiol, curcuphenol, abolene and sesquiterpenoid. Biological studies of these compounds revealed that curcudiol is a ligand of the sex hormone-binding globulin. This protein is involved in transporting and regulating the concentration of steroids such as testosterone and estradiol. Many pathological conditions have a lower plasma concentration of these steroids. Ligands to SHBG can release steroids into the blood, so this protein is a potential drug target to treat conditions where a hormone insufficiency is present.

Bioassay guided fractionation of a crude extract of the marine sponge Neopetrosia exigua resulted in the first reported isolation of exiguamines A and B. These pyrroloquinone alkaloids have an unprecedented hexacyclic skeleton that has not been previously encountered in natural products. Biological studies have identified exiguamine A as a potent in vitro inhibitor of the enzyme indoleamine-2,3-dioxygenase (IDO). IDO is an enzyme expressed by tumor cells to evade the immune system. Inhibitors against this enzyme may allow the immune system to attack cancer cells, making this enzyme a potential drug target for anti-cancer agents. Investigation of the crude extract of a Bacillus sp. collected in Dominica led to the isolation of the known diketopiperazine cyclo(S-Val-S-Phe) (3.9). In vitro biological studies revealed that cyclo(S-Val-S-Phe) is able to promote neurite outgrowth, even in the presence of physiological inhibitors. In vivo studies have shown that cyclo(S-VaI-S-Phe) is able promote sprouting in serotonergic and adrenergic axons. Synthesis of the other three diastereomers led to the discovery that cyclo(R-Val-R-Phe) is also an in vitro activator of axonal outgrowth. Inhibitors of the G2 checkpoint are able to increase the cytotoxicity of DNA damaging chemotherapeutics. Bioassay guided fractionation of an extract of the South American plant Duguetia odorata led to the isolation of the G2 checkpoint abrogator, oliveroline. This investigation also led to the isolation of the previously unreported alkaloid N-methylguatterine, and the known alkaloids dehydrodiscretine and pseudopalmatine. Chemical investigation of the marine sponge Myrmekioderma granulatum led to the isolation of the new compounds abolenone and myrmekioside C, as well as the known compounds curcudiol, curcuphenol, abolene and sesquiterpenoid. Biological studies of these compounds revealed that curcudiol is a ligand of the sex hormone-binding globulin. This protein is involved in transporting and regulating the concentration of steroids such as testosterone and estradiol. Many pathological conditions have a lower plasma concentration of these steroids. Ligands to SHBG can release steroids into the blood, so this protein is a potential drug target to treat conditions where a hormone insufficiency is present. / Science, Faculty of / Chemistry, Department of / Graduate

Avloppsvatten från restauranger och skolkök innehåller en stor mängd fett och olja som kan täppa igen rör och ledningar och även interagera med mikrobiologiska processer på reningsverken. För att minska dessa problem installeras fettavskiljare. Fettavskiljarna måste tömmas med jämna mellanrum för att behålla sin effektivitet vilket är både tidskrävande och kostsamt. Vid ackumulering av fettet bildas en fettkaka som tillsammans med hög halt organiskt material och suspenderade ämnen orsakar en anaerob miljö i fettavskiljaren vilket ofta leder till svavelväteproduktion som är toxiskt och bidrar till en obehaglig lukt. För att lösa dessa problem studeras möjligheten att använda biologisk behandling av fettavskiljare. Syftet med studien var att undersöka möjligheten att använda biologisk behandling av fettavskiljare. Detta utfördes genom att först fysikaliskt och kemiskt karaktärisera avloppsvattnet och fettkakan i tre olika fettavskiljare utanför skolkök och sedan isolera lipasaktiva Bacillus sp. samt undersöka dessas fettnedbrytande förmåga i avloppsvatten från en fettavskiljare i huvudsakligen aerob respektive anaerob miljö. Resultaten av nedbrytningsförsöket tyder på att tillsats av bakterier till avloppsvattnet ökar reduceringen av det biologiskt nedbrytbara materialet samt att en huvudsakligen aerob miljö är viktig för fettnedbrytningen och för att minska den obehagliga lukten. Resultaten tyder även på att isolat R bidrog till en kraftig reducering av BOD och att det även var ett av de isolat vars halt minskat minst av de testade efter inkubering. Det hade varit önskvärt att veta detta isolats fettnedbrytande förmåga men halten fett var så hög att det inte kunde observeras med använda mätmetoder. Fler studier behövs för att karaktärisera bakteriefloran i fettavskiljarna för att få mer kunskap och hitta bra fettnedbrytande bakterier som positivt kan interagera med befintlig mikroflora och användas till effektiv biobehandling av fettavskiljare. / The high content of fats and oils in wastewater from restaurants and school kitchens is a problem because of their ability to block pipes and sewer lines. They can also integrate with the biological processes at the wastewater treatment plant and reduce its effectivity. Grease separators are often installed to decrease these problems. The gradual accumulation of fat in grease separators occurs with the development of a grease cap and together with a high organic load and a high concentration of solid particles there will be an anaerobic environment. This often leads to the production of hydrogen sulphide which is toxic and contributes to an unpleasant odor. To solve these problems the potential of biotreatment of grease separators is studied. The aim of this study was to investigate the potential of using biotreatment in grease separators. This was performed through characterization of the wastewater and the grease cap content in three different grease separators from different schools and through isolation of lipase active Bacillus sp. and evaluation of their fat degrading ability in wastewater in primarily aerobic respectively anaerobic environment.  The results of the degradation test indicate that the adding of bacteria to wastewater will increase the reduction of biodegradable material and that a primarily aerobic environment is important for the degradation of fat and the reduction of the unpleasant odor. The result also indicates that isolate R contributed to an important degradation of biodegradable material and that it was one of the isolates that had the least reduction of bacteria after incubation. It would have been desirable to evaluate their fat degrading ability but the content of fat in the samples was too high so they were described as >5000 mg/ l and no degradation could be observed. There is a need of further studies of the bacterial flora in grease separators to receive more knowledge about it and to find efficient fat degrading bacteria that positively could integrate with the existing bacterial flora and be used in effective bio treatment of grease separators.

Uma bactéria identificada como Bacillus sp. P34 isolada de intestino de peixe (Leporinus sp.) da Bacia Amazônica foi estudada quanto a sua capacidade de produzir substâncias do tipo-bacteriocina. As condições ótimas para produção da substância antimicrobiana foram determinadas. A produção da atividade antimicrobiana foi observada começando na fase exponencial de crescimento, sendo a atividade máxima observada no início da fase estacionária. Os resultados da Análise de Superfície de Resposta mostraram que a máxima produção da atividade antimicrobiana ocorreu a pH inicial entre 6.0 e 8.0 e temperaturas entre 25 e 37°C. A substância inibiu bactérias patogênicas e deteriorantes importantes em alimentos como Listeria monocytogenes, Bacillus cereus, Aeromonas hydrophila, Erwinia carotovora e Pasteurella haemolytica. O teste de termoestabilidade mostrou a perda de atividade quando a temperatura alcançou 100°C por 15 minutos. Foi sensível à ação das enzimas proteolíticas tripsina, papaína e pronase E. A substância antimicrobiana apresentou efeito bactericida e bacteriolítico sobre L. monocytogenes e B. cereus a 160 UA ml-1. O crescimento de Escherichia coli and Salmonella Enteritidis foi inibido somente quando o agente quelante EDTA foi adicionado juntamente. A atividade esporocida não foi observada. A análise da cultura de L. monocytogenes depois do tratamento com o composto antimicrobiano, usando espectroscopia de infravermelho com transformada de Fourier mostrou alterações no perfil de ácidos graxos e fosfolipídios da membrana celular bacteriana. Há evidências de que seu modo de ação interfira na membrana e na parede celular. A substância foi purificada pelo seguinte protocolo: precipitação com sulfato de amônio, cromatografias de gel filtração e de troca iônica. O peso molecular da substância foi determinado por espectroscopia de massas sendo 1498.68 Da. A substância antimicrobiana purificada apresentou sensibilidade ao tratamento com proteases e manutenção da atividade foi observada após congelamento e à incubação de 70°C por 30 minutos. / A bacterium identified as Bacillus sp. strain P34 isolated from fish intestine (Leporinus sp.) from the Amazon basin was studied in its capacity to produce bacteriocinlike substances. The optimal conditions for producing the antimicrobial activity have been established. The antimicrobial activity was produced starting at the exponencial growth phase, and maximum activity was observed at early stationary phase. Response-surface data showed that maximum antimicrobial activity production was at initial pH between 6.0 and 8.0 and temperature between 25 and 37°C. The antimicrobial substance inhibited pathogenic and spoilage food bacteria such as Listeria monocytogenes, Bacillus cereus, Aeromonas hydrophila, Erwinia carotovora and Pasteurella haemolytica. The thermoestability test showed the loss of activity when the temperature reached 100°C for 15 min. It was sensitive to the proteolytic action of trypsin, papain and pronase E. The antimicrobial substance was bactericidal and bacteriolytic to L. monocytogenes and B. cereus at 160 AU ml-1. Growth of Escherichia coli and Salmonella Enteritidis was inhibited, but only when the chelating agent EDTA was co-added. Sporocidal activity was not observed. The analysis of the culture of L. monocytogenes after being treated with antimicrobial compound, using Fourier transform infrared spectroscopy, established a change in the profile that corresponding assignments of fatty acid and phospholipids. There was evidence that its mode of action to interfere with cell membrane and the cell wall. The substance was purified by the following protocol: precipitation with ammonium sulphate, gel filtration and ion exchange chromatography. The molecular weight was determined by mass spectroscopy as 1498.68 Da. Purified antimicrobial substance has shown sensitivity to protease treatment and maintained activity after freezing and incubation at 70°C for 30 min.

Uma bactéria identificada como Bacillus sp. P34 isolada de intestino de peixe (Leporinus sp.) da Bacia Amazônica foi estudada quanto a sua capacidade de produzir substâncias do tipo-bacteriocina. As condições ótimas para produção da substância antimicrobiana foram determinadas. A produção da atividade antimicrobiana foi observada começando na fase exponencial de crescimento, sendo a atividade máxima observada no início da fase estacionária. Os resultados da Análise de Superfície de Resposta mostraram que a máxima produção da atividade antimicrobiana ocorreu a pH inicial entre 6.0 e 8.0 e temperaturas entre 25 e 37°C. A substância inibiu bactérias patogênicas e deteriorantes importantes em alimentos como Listeria monocytogenes, Bacillus cereus, Aeromonas hydrophila, Erwinia carotovora e Pasteurella haemolytica. O teste de termoestabilidade mostrou a perda de atividade quando a temperatura alcançou 100°C por 15 minutos. Foi sensível à ação das enzimas proteolíticas tripsina, papaína e pronase E. A substância antimicrobiana apresentou efeito bactericida e bacteriolítico sobre L. monocytogenes e B. cereus a 160 UA ml-1. O crescimento de Escherichia coli and Salmonella Enteritidis foi inibido somente quando o agente quelante EDTA foi adicionado juntamente. A atividade esporocida não foi observada. A análise da cultura de L. monocytogenes depois do tratamento com o composto antimicrobiano, usando espectroscopia de infravermelho com transformada de Fourier mostrou alterações no perfil de ácidos graxos e fosfolipídios da membrana celular bacteriana. Há evidências de que seu modo de ação interfira na membrana e na parede celular. A substância foi purificada pelo seguinte protocolo: precipitação com sulfato de amônio, cromatografias de gel filtração e de troca iônica. O peso molecular da substância foi determinado por espectroscopia de massas sendo 1498.68 Da. A substância antimicrobiana purificada apresentou sensibilidade ao tratamento com proteases e manutenção da atividade foi observada após congelamento e à incubação de 70°C por 30 minutos. / A bacterium identified as Bacillus sp. strain P34 isolated from fish intestine (Leporinus sp.) from the Amazon basin was studied in its capacity to produce bacteriocinlike substances. The optimal conditions for producing the antimicrobial activity have been established. The antimicrobial activity was produced starting at the exponencial growth phase, and maximum activity was observed at early stationary phase. Response-surface data showed that maximum antimicrobial activity production was at initial pH between 6.0 and 8.0 and temperature between 25 and 37°C. The antimicrobial substance inhibited pathogenic and spoilage food bacteria such as Listeria monocytogenes, Bacillus cereus, Aeromonas hydrophila, Erwinia carotovora and Pasteurella haemolytica. The thermoestability test showed the loss of activity when the temperature reached 100°C for 15 min. It was sensitive to the proteolytic action of trypsin, papain and pronase E. The antimicrobial substance was bactericidal and bacteriolytic to L. monocytogenes and B. cereus at 160 AU ml-1. Growth of Escherichia coli and Salmonella Enteritidis was inhibited, but only when the chelating agent EDTA was co-added. Sporocidal activity was not observed. The analysis of the culture of L. monocytogenes after being treated with antimicrobial compound, using Fourier transform infrared spectroscopy, established a change in the profile that corresponding assignments of fatty acid and phospholipids. There was evidence that its mode of action to interfere with cell membrane and the cell wall. The substance was purified by the following protocol: precipitation with ammonium sulphate, gel filtration and ion exchange chromatography. The molecular weight was determined by mass spectroscopy as 1498.68 Da. Purified antimicrobial substance has shown sensitivity to protease treatment and maintained activity after freezing and incubation at 70°C for 30 min.

Uma bactéria identificada como Bacillus sp. P34 isolada de intestino de peixe (Leporinus sp.) da Bacia Amazônica foi estudada quanto a sua capacidade de produzir substâncias do tipo-bacteriocina. As condições ótimas para produção da substância antimicrobiana foram determinadas. A produção da atividade antimicrobiana foi observada começando na fase exponencial de crescimento, sendo a atividade máxima observada no início da fase estacionária. Os resultados da Análise de Superfície de Resposta mostraram que a máxima produção da atividade antimicrobiana ocorreu a pH inicial entre 6.0 e 8.0 e temperaturas entre 25 e 37°C. A substância inibiu bactérias patogênicas e deteriorantes importantes em alimentos como Listeria monocytogenes, Bacillus cereus, Aeromonas hydrophila, Erwinia carotovora e Pasteurella haemolytica. O teste de termoestabilidade mostrou a perda de atividade quando a temperatura alcançou 100°C por 15 minutos. Foi sensível à ação das enzimas proteolíticas tripsina, papaína e pronase E. A substância antimicrobiana apresentou efeito bactericida e bacteriolítico sobre L. monocytogenes e B. cereus a 160 UA ml-1. O crescimento de Escherichia coli and Salmonella Enteritidis foi inibido somente quando o agente quelante EDTA foi adicionado juntamente. A atividade esporocida não foi observada. A análise da cultura de L. monocytogenes depois do tratamento com o composto antimicrobiano, usando espectroscopia de infravermelho com transformada de Fourier mostrou alterações no perfil de ácidos graxos e fosfolipídios da membrana celular bacteriana. Há evidências de que seu modo de ação interfira na membrana e na parede celular. A substância foi purificada pelo seguinte protocolo: precipitação com sulfato de amônio, cromatografias de gel filtração e de troca iônica. O peso molecular da substância foi determinado por espectroscopia de massas sendo 1498.68 Da. A substância antimicrobiana purificada apresentou sensibilidade ao tratamento com proteases e manutenção da atividade foi observada após congelamento e à incubação de 70°C por 30 minutos. / A bacterium identified as Bacillus sp. strain P34 isolated from fish intestine (Leporinus sp.) from the Amazon basin was studied in its capacity to produce bacteriocinlike substances. The optimal conditions for producing the antimicrobial activity have been established. The antimicrobial activity was produced starting at the exponencial growth phase, and maximum activity was observed at early stationary phase. Response-surface data showed that maximum antimicrobial activity production was at initial pH between 6.0 and 8.0 and temperature between 25 and 37°C. The antimicrobial substance inhibited pathogenic and spoilage food bacteria such as Listeria monocytogenes, Bacillus cereus, Aeromonas hydrophila, Erwinia carotovora and Pasteurella haemolytica. The thermoestability test showed the loss of activity when the temperature reached 100°C for 15 min. It was sensitive to the proteolytic action of trypsin, papain and pronase E. The antimicrobial substance was bactericidal and bacteriolytic to L. monocytogenes and B. cereus at 160 AU ml-1. Growth of Escherichia coli and Salmonella Enteritidis was inhibited, but only when the chelating agent EDTA was co-added. Sporocidal activity was not observed. The analysis of the culture of L. monocytogenes after being treated with antimicrobial compound, using Fourier transform infrared spectroscopy, established a change in the profile that corresponding assignments of fatty acid and phospholipids. There was evidence that its mode of action to interfere with cell membrane and the cell wall. The substance was purified by the following protocol: precipitation with ammonium sulphate, gel filtration and ion exchange chromatography. The molecular weight was determined by mass spectroscopy as 1498.68 Da. Purified antimicrobial substance has shown sensitivity to protease treatment and maintained activity after freezing and incubation at 70°C for 30 min.

Yes / Bacillus sp. is a Gram-positive bacterium that is commonly found in seawater. In this study, the genome of marine Bacillus sp. strain G3(2015) was sequenced using MiSeq. The fosfomycin resistant gene fosB was identified upon bacterial genome annotation. / University of Malaya through HIR grants (UM-MOHE HIR grant UM C/625/1/HIR/MOHE/CHAN/14/1, H-50001-A000027; UM-MOHE HIR grant UM C/625/1/HIR/MOHE/CHAN/01, A000001- 50001); Postgraduate Research grant PG083-2015B

Cyclodextrin glucanotransferase (EC 2.4.1.19) from the alkaliphilic Bacillus sp. G-825-6 converts starch mainly to c-cyclodextrin (CD8). A combination of error-prone PCR and DNA shuffling was used to obtain variants of this enzyme with higher product specificity for CD8 and a broad pH activity range. The variant S54 with seven amino acid substitutions showed a 1.2-fold increase in CD8-synthesizing activity and the product ratio of CD7:CD8 was shifted to 1:7 compared to 1:3 of the wild-type enzyme. Nine amino acid substitutions of the cyclodextrin glucanotransferase were performed to generate the variant S35 active in a pH range 4.0–10.0. Compared to the wild-type enzyme which is inactive below pH 6.0, S35 retained 70% of its CD8-synthesizing activity at pH 4.0.