Epilithic biofilms were monitored for potential impacts of an experimental rainbow trout aquaculture operation at the Experimental Lakes Area in northwestern Ontario, Canada. Metabolic and particulate samples were collected from the middle littoral zone of the experimental and reference lakes before and during the aquaculture operation. Phosphorus stocks in the experimental lake (epilimnetic and epilithic) increased as a result of both food waste and fish excretion. These cumulative P inputs were predicted to increase epilithic biomass and productivity, cause major compositional changes in the dominant groups and increase epilithic algal toxin production (microcystins). However, no major aquaculture-related changes in algal biomass, productivity, toxins or group dominance were observed in the epilithon. The only observed changes occurred at the species-level. These species-level changes were transient but did allude to an ecosystem reacting to stress. / February 2009

Epilithic biofilms were monitored for potential impacts of an experimental rainbow trout aquaculture operation at the Experimental Lakes Area in northwestern Ontario, Canada. Metabolic and particulate samples were collected from the middle littoral zone of the experimental and reference lakes before and during the aquaculture operation. Phosphorus stocks in the experimental lake (epilimnetic and epilithic) increased as a result of both food waste and fish excretion. These cumulative P inputs were predicted to increase epilithic biomass and productivity, cause major compositional changes in the dominant groups and increase epilithic algal toxin production (microcystins). However, no major aquaculture-related changes in algal biomass, productivity, toxins or group dominance were observed in the epilithon. The only observed changes occurred at the species-level. These species-level changes were transient but did allude to an ecosystem reacting to stress.

Epilithic biofilms were monitored for potential impacts of an experimental rainbow trout aquaculture operation at the Experimental Lakes Area in northwestern Ontario, Canada. Metabolic and particulate samples were collected from the middle littoral zone of the experimental and reference lakes before and during the aquaculture operation. Phosphorus stocks in the experimental lake (epilimnetic and epilithic) increased as a result of both food waste and fish excretion. These cumulative P inputs were predicted to increase epilithic biomass and productivity, cause major compositional changes in the dominant groups and increase epilithic algal toxin production (microcystins). However, no major aquaculture-related changes in algal biomass, productivity, toxins or group dominance were observed in the epilithon. The only observed changes occurred at the species-level. These species-level changes were transient but did allude to an ecosystem reacting to stress.

Physicochemical factors, algal diversity, taxonomic composition and standing crop were investigated across a broad gradient of AMD stress in streams and rivers. 52 sites were surveyed in the vicinity of Greymouth, Reefton, Westport and Blackball, on the West Coast, South Island. Seven sites in the Reefton area were sampled from April 2006 - February 2007 to establish changes over time in benthic algal communities of AMD and reference streams. Longitudinal change and ecosystem recovery were also investigated by sampling eight sites down Devils Creek, Reefton, and two of its tributaries. AMD has negative impacts on algal diversity, generally increases the dominance of certain taxa and, where metal oxide deposition or hydraulic disturbance are not great, can lead to algal proliferations. These proliferations were chlorophyte dominated, predominantly by filamentous Klebsormidium acidophilum. From the general survey a total of 15 taxa were identified from the most severely impacted sites (pH <3.6), which included both acidophiles and acidotolerant algae. Multivariate analyses strongly suggest that pH was the dominant factor controlling taxonomic occurrence of diatoms, macroalgae and the structure of the total assemblage. Other factors such as conductivity, metal oxide deposition, temperature, depth, month, geographic location and altitude were also important. Algal communities changed over time and this became more marked as AMD impact decreased. This was presumably due to AMD stressors reducing diversity, and thus the available scope for assemblage change. Longitudinal differences in assemblage structure within Devils Creek appeared to be in response to dilution of AMD in upper reaches and to changes in natural physical features such as gradient in mid and lower reaches. After a distance of 7.2 km the physicochemical effects of AMD and suspended clay inputs were minimal. At this site and at several previous sites, the assemblage exhibited a degree of recovery towards that found at unimpacted sites. A range of algae found in the broad scale-survey are potentially useful 'sensitive' indicators. These included: Heteroleibleinia purpurascens; Achnanthes oblongella; Oedogonium sp. and Spirogyra sp. In contrast: Euglena mutabilis; Navicula cincta; K. acidophilum; Microspora quadrata and Microthamnion kuetzingianum may be useful 'tolerance' indicators. These data show that AMD has a range of negative impacts on algae, and algae may be a useful tool for monitoring these impacts in West Coast streams.

Physicochemical factors, algal diversity, taxonomic composition and standing crop were investigated across a broad gradient of AMD stress in streams and rivers. 52 sites were surveyed in the vicinity of Greymouth, Reefton, Westport and Blackball, on the West Coast, South Island. Seven sites in the Reefton area were sampled from April 2006 - February 2007 to establish changes over time in benthic algal communities of AMD and reference streams. Longitudinal change and ecosystem recovery were also investigated by sampling eight sites down Devils Creek, Reefton, and two of its tributaries. AMD has negative impacts on algal diversity, generally increases the dominance of certain taxa and, where metal oxide deposition or hydraulic disturbance are not great, can lead to algal proliferations. These proliferations were chlorophyte dominated, predominantly by filamentous Klebsormidium acidophilum. From the general survey a total of 15 taxa were identified from the most severely impacted sites (pH <3.6), which included both acidophiles and acidotolerant algae. Multivariate analyses strongly suggest that pH was the dominant factor controlling taxonomic occurrence of diatoms, macroalgae and the structure of the total assemblage. Other factors such as conductivity, metal oxide deposition, temperature, depth, month, geographic location and altitude were also important. Algal communities changed over time and this became more marked as AMD impact decreased. This was presumably due to AMD stressors reducing diversity, and thus the available scope for assemblage change. Longitudinal differences in assemblage structure within Devils Creek appeared to be in response to dilution of AMD in upper reaches and to changes in natural physical features such as gradient in mid and lower reaches. After a distance of 7.2 km the physicochemical effects of AMD and suspended clay inputs were minimal. At this site and at several previous sites, the assemblage exhibited a degree of recovery towards that found at unimpacted sites. A range of algae found in the broad scale-survey are potentially useful 'sensitive' indicators. These included: Heteroleibleinia purpurascens; Achnanthes oblongella; Oedogonium sp. and Spirogyra sp. In contrast: Euglena mutabilis; Navicula cincta; K. acidophilum; Microspora quadrata and Microthamnion kuetzingianum may be useful 'tolerance' indicators. These data show that AMD has a range of negative impacts on algae, and algae may be a useful tool for monitoring these impacts in West Coast streams.

Littoral zone primary production is under-studied relative to the pelagic zone, despite recent work indicating its importance to the lake as a whole. Benthic extracellular material, shown to be important for food web dynamics and stabilization of the surrounding ecosystem in the marine intertidal, is even less frequently studied in lakes. I examined the environmental and community level drivers of benthic primary production, and found production to increase over the summer and to decrease with disturbance. I also found that maximum photosynthesis and efficiency under sub-saturating light both increased with depth, contrary to the existing, laboratory-derived paradigm of a trade-off between the two. I also examined how benthic primary production and environmental factors were correlated with the amount of extracellular material. I found that loosely bound colloidal extracellular material decreased with in situ photosynthesis and was affected by algal community composition, whereas tightly bound capsular extracellular material was affected only by date, indicating that capsular material is refractory in lakes just as it is in marine systems. Contrary to what is seen in marine systems, however, there were no direct effects of the environmental factors, possibly the result of physical differences between these systems. I also performed the first cross-ecosystem comparison of extracellular material. Despite relatively few studies from lakes and streams, and methods which have not been standardized, I found that lakes were similar to marine intertidal zones both in their median amounts of extracellular material and their relationships between extracellular material and chlorophyll a. This relationship appeared to be quite different in streams, with very low amounts of extracellular material found at sites with either high or low chlorophyll a concentrations. While the above studies will improve future estimates of lake carbon budgets and whole-lake production, my development of a permutation test for path analysis, and a novel application of the Bayesian principal components analysis, will assist all ecological studies that are often restricted in their sample sizes or compromised by missing data.

Littoral zone primary production is under-studied relative to the pelagic zone, despite recent work indicating its importance to the lake as a whole. Benthic extracellular material, shown to be important for food web dynamics and stabilization of the surrounding ecosystem in the marine intertidal, is even less frequently studied in lakes. I examined the environmental and community level drivers of benthic primary production, and found production to increase over the summer and to decrease with disturbance. I also found that maximum photosynthesis and efficiency under sub-saturating light both increased with depth, contrary to the existing, laboratory-derived paradigm of a trade-off between the two. I also examined how benthic primary production and environmental factors were correlated with the amount of extracellular material. I found that loosely bound colloidal extracellular material decreased with in situ photosynthesis and was affected by algal community composition, whereas tightly bound capsular extracellular material was affected only by date, indicating that capsular material is refractory in lakes just as it is in marine systems. Contrary to what is seen in marine systems, however, there were no direct effects of the environmental factors, possibly the result of physical differences between these systems. I also performed the first cross-ecosystem comparison of extracellular material. Despite relatively few studies from lakes and streams, and methods which have not been standardized, I found that lakes were similar to marine intertidal zones both in their median amounts of extracellular material and their relationships between extracellular material and chlorophyll a. This relationship appeared to be quite different in streams, with very low amounts of extracellular material found at sites with either high or low chlorophyll a concentrations. While the above studies will improve future estimates of lake carbon budgets and whole-lake production, my development of a permutation test for path analysis, and a novel application of the Bayesian principal components analysis, will assist all ecological studies that are often restricted in their sample sizes or compromised by missing data.

Algae are important components of stream food webs and often used in biomonitoring assessments. Little is known regarding the factors that limit their abundance in streams of the VA Coastal Plain. The surficial geology of the Coastal Plain is predominately sandy deposits which comprise the dominant substrate in streams of this region. In a comparative study of five streams located near the VCU Rice Center, we quantified substrate composition, light availability, and nutrient concentrations to assess their relative importance in determining benthic algal abundance. The proportion of stream area comprised of hard substrates was a significant predictor of variation in benthic algal abundance (r²=0.66). An experimental component comparing algal colonization on artificial hard substrates (tile) to the natural substrate reinforced the importance of substrate stability. Hard substrates which included gravel and aggregated clay likely provided greater stability for algal colonization relative to sand and silt deposits, resulting in lower mortality from scouring and sedimentation. Incident solar radiation was a secondary factor affecting algal abundance with shaded streams exhibiting lower benthic chlorophyll. Where substrate and light conditions were favorable, relationships between benthic algal abundance and dissolved phosphorus concentrations were observed. Seasonal fluctuations were ameliorated by high light conditions and constant disturbances at sites lacking hard substrates which kept CHLa at consistently low levels. The mean proportion of FBOM C derived from benthic algae ranged from 10 to 24%. In spite of the consistently low observed benthic algal abundance at sandy unstable Coastal Plain streams, benthic algae are an important source of benthic organic matter.

There has been much interest in the last decade concerning the factors that influence diversity, especially how diversity and ecosystem processes may be linked. This study was based in small, cobble streams in South East Queensland. Its aim was to determine how the diversity and composition of consumers (the grazer guild) is influenced by both the production and composition of benthic algae, at different spatial scales. It also aimed to ascertain whether this response differs among grazer sub guilds with different dispersal capabilities. Ten sites in the Upper Brisbane and Mary catchments were sampled. The sites were selected to provide a range of productivity and composition. Grazers from these sites included snails and elmids, and larval mayflies, moths, and caddisflies. Grazer diversity and composition appeared to be structured by catchment scale influences, but environmental variables also affected which animals colonised patches and microhabitats (cobbles) within catchments. Primary productivity and algal composition could not be separated, with highly productive reaches also having a high cover of filamentous algal taxa. Grazer diversity displayed strongly positive, linear relationships with algal variables at the reach scale. It had a negative relationship with filamentous algae at the cobble scale, and a non-significant hump-shaped relationship with primary productivity. Survey data alone could not separate whether grazers were responding to habitat or food-related drivers, or to variations in productivity. Experimental manipulation of algal variables at the patch scale, using light and nutrients, also could not clearly uncouple the relationship between primary productivity and filamentous algal cover. Once reach scale variation was removed, grazer diversity displayed hump-shaped relationships with algal variables, including algal diversity. Much of this variation was due to patterns in mobile grazers, as sedentary grazers did not respond to algal variation at this scale. The density of the more mobile taxa showed similar patterns to those at the cobble scale (hump-shaped). A second field experiment was carried out in order to further investigate the responses of invertebrates to algal community composition at the cobble scale. Data from all three chapters suggested that as sites shifted to a dominance of filamentous algae, often with an associated increase in GPP, there was also a shift in the grazer community towards more sedentary grazers and away from the more mobile taxa. This also occurred at the cobble scale in the second experiment. The gut analysis and diet studies in the third chapter indicated that while many grazers consumed filamentous algae, it was not assimilated. This suggests that the preferences for sedentary taxa for cobbles and reaches dominated by filamentous algae are likely to be due to some other, possibly habitat-related, factor such as flow or predation refuge. The study provides a rare examination of relationships between primary productivity and consumer diversity in freshwater streams, and finds support for the pattern found in other systems of monotonic relationships of these two variables at large scales and hump-shaped relationships at smaller scales. It emphasises the importance of understanding other, potentially confounding, aspects of communities of producers, and investigates the possible roles of the most important of these (community composition) in structuring consumer communities in the small cobble streams of South-East Queensland.

<p>For a complete picture of the lake ecosystem, it is necessary to understand the mechanisms regulating biomass and nutrient status (nutrient limitation, optimal supply, or surplus) of benthic algae, which are important primary producers and a food resource for grazers. This thesis gives an overview of the natural variation of benthic algae at different scales of space and time and on different substrates, and unravels some of the underlying factors. Algal nutrient status was assessed using the C:N:P (carbon:nitrogen:phosphorus) ratio of the entire natural benthic community. A review, observations, and experiments confirmed that a C:N:P ratio of about 158:18:1 (molar basis) represented an optimal nutrient supply, and that substantially higher C:N, N:P, or C:P ratios reflected algal growth limitation caused by an N or P nutrient deficiency. </p><p>Horizontal variation of benthic algal biomass and nutrient status was patchy, of similar amount for all investigated distances, substrates, and lakes, and constituted a dominant proportion of the total variation. For example, patches of nutrient limited algae were found within only 10 m distance from patches with a nutrient surplus. Thus, horizontal variation should not be neglected when sampling benthic algae in lakes. Field observations suggested an impact of wind, nutrients, and grazers on the horizontal variation. Light and nutrients might have caused the observed vertical and temporal variation. Field experiments confirmed a simultaneous control of benthic algal biomass by nutrients and grazing, mediated by light and temperature. Grazing effects were larger than nutrient effects, but the comparison of natural communities in lakes of different trophy suggested that benthic algal biomass was controlled by nutrients in the long run. </p><p>An important nutrient supply was animal excretions, causing a low C:N:P ratio of epizoon on zebra mussels, and algal communities associated with macrograzers. A field experiment revealed that 15N circulated one week longer in epizoon associated with a sessile caddisfly than in surrounding epilithon. In conclusion, the regulation of benthic algal biomass and nutrient status in lakes is complex, and benthic animals should be looked at not only as grazers, but also as a nutrient source.</p>