This thesis characterizes major factors influencing the accumulation of polychlorinated biphenyls (PCBs), organochlorine (OC) pesticides, and polybrominated diphenyl ethers (PBDEs), in grizzly bears. Dietary differences among grizzly bears have significant implications for contaminant concentrations and patterns. While salmon-eating bears were dominated by lipophilic PCBs, OC pesticides, and lower-brominated PBDEs, non-salmon-eating bears were dominated by the more volatile PCBs and OC pesticides and higher-brominated PBDEs (e.g. BDE-209). Overall, the ocean-salmon-bear pathway appeared to preferentially select for those contaminants with an intermediate log Kow ~6.5, with salmon delivering up to 70% of OC pesticides, 85% of PBDEs and 90% of PCBs to grizzly bears. Fat utilization by grizzly bears during hibernation results in significant contaminant concentration increases in residual fat (“concentration effect”). Overall, total PCBs increased by 2.21 times from pre- to post-hibernation, and total PBDEs by 1.58 times. Interestingly, the patterns of the two distinct pre-hibernation grizzly bear feeding ecologies (salmon- and non-salmon-eating) converged during hibernation, suggesting that shared metabolic capacities drive POP patterns during hibernation. Relative to salmon, grizzly bears have extremely low biomagnification factors (BMFs) for PCBs (0.147), compared to other marine mammals. Low BMF values were a result of >90% depuration (loss) of PCBs through contaminant metabolism and excretion. The results suggest that grizzly bears only metabolize PCB congeners with meta- and para- vicinal hydrogen (H) atoms, suggesting that they have active cytochrome (CYP) P450 2B/3A-like metabolic enzymes. However, congeners structurally resistant to metabolic biotransformation, and those with ortho- and meta- vicinal H atoms, were not readily metabolized, but rather were lost through excretion. This was evidenced by a significant relationship between total retention (Rtotal) of those congeners and log Kow, as well as a lack of change in that relationship during hibernation. Vegetation and the terrestrial food web were dominated by PBDEs and volatile OC pesticides and PCBs, while salmon and the marine food web were dominated by lipophilic PCBs and OC pesticides, mirroring patterns in grizzly bears within their respective food web. Following consumption of these various foods by the grizzly bears, fecal material closely resembled food in contaminant pattern, suggesting that many of the contaminants may go unabsorbed. While previous work identified major factors (e.g. age, sex, diet) influencing POP behaviour in wildlife and food webs, this research highlights the need to refine our ideas about those factors in order to better assess chemical health risk in wildlife by considering: 1) individual differences in feeding behaviour; 2) integrated dietary histories (temporal changes); 3) unique biological traits affecting POP fate; 4) modes of POP loss other than metabolism; 5) selection of the most recalcitrant congener for more robust analysis of POP behaviour; 6) use of non-invasive techniques to study diet and POP exposure; and, 7) tissue residue guidelines underestimate health risks. Our results also suggest that PBDEs show POP-type characteristics as defined under the Stockholm Convention, and thus should be regulated.

Behaviour (activity budget, degree of terrestriality, intergroup sociality) and diet, and the impact of proximity to forest edge on both, were compared between two populations of ringtailed lemurs (Lemur catta) inhabiting rocky outcrop/anthropogenic savannah-surrounded forest fragments in south-central Madagascar. Both sites—a fragment in the Tsaranoro Valley local to Andringitra National Park, and a fragment at Anja Special Reserve, adjacent to National Route 7 in the Ambalavao area—are considered sacred forests (sites of human burial) by the local people living in these regions, and are therefore subject to traditional protective prohibitions (fady). Both sites attract tourists, but are managed differently, and the resources available to the L. catta differ between sites, affecting the behaviour of the lemur populations: L. catta at Tsaranoro spent more time feeding, and less time resting and engaging in social behaviour compared with those at Anja, where introduced fruiting trees were available and resource abundance appeared to be relatively higher. Also, L. catta at Tsaranoro were less edge-avoidant, with some groups travelling over 400 meters beyond outside the forest in order to utilize resources at the tourist establishment local to the site. L. catta at Anja were never observed more than nine meters outside the forest. Although the fragments are of similar size and were expected to differ little, many significant behavioural dissimilarities were observed, suggesting the importance of the refinement of rapid assessment techniques for judging the habitat suitability and conservational value of small forest fragments.

Beaked whales (family Ziphiidae) are one of the least known of all mammalian groups. The majority of species have been described from only a handful of specimens. Found in deep ocean waters, these species are widespread and often sexually dimorphic. Little is known of intra-specific variation in morphology, and many species are very similar in external appearance. A reference database of mitochondrial DNA sequences was compiled for all 20 recognised ziphiid species to aid in species identification. All reference sequences were derived from validated specimens, which were often represented only by bone or teeth. DNA was obtained from this ‘historic’ material using ‘ancient’ DNA methods. For three species, holotypes were sampled. Phylogenetic analyses using this database led to the discovery of a new, previously unrecognised species of beaked whale (Mesoplodon perrini), new specimens of Longman's beaked whale (Indopacetus pacificus), a species known previously from only two partial skulls and the synonymy of a third (M. traversii = M. bahamondi). Phylogenetic reconstructions based on sequence data from three mitochondrial and two nuclear loci (total, 2815 bp) using neighbour joining, parsimony, and maximum likelihood methods, resolved many of the sister-species relationships in this group. Inferred relationships among Mesoplodon beaked whales indicated that cranial and tooth morphology may be far more variable between closely related species than previously assumed. No support was found for a linear-progression of tooth form as suggested by Moore (1968) in his phenetic evaluation of relationships among the Ziphiidae. The geographic distribution of Mesoplodon species with similar or divergent tooth morphology is likely due to a combination of sexual selection and selection for species recognition. Both hypotheses predict similar patterns, such as dissimilar tooth morphology among species with sympatric or parapatric distributions. However, only sexual selection appears to offer an explanation for why there are so many Mesoplodon beaked whales. Investigation of mtDNA diversity among a number of beaked whale species indicated that nucleotide diversity was generally lower in this group than in other wide-ranging oceanic cetaceans. The cause of this low diversity was not clear but may be indicative of overall low abundance. Particularly low levels of diversity were found in Baird's beaked whale Berardius bairdii , Arnoux's beaked whale B. arnuxii and the northern bottlenose whale Hyperoodon ampullatus. Strong geographic structure in haplotype frequencies was observed among a worldwide sample of Cuvier's beaked whales Ziphius cavirostris. / Subscription resource available via Digital Dissertations only.

Beaked whales (family Ziphiidae) are one of the least known of all mammalian groups. The majority of species have been described from only a handful of specimens. Found in deep ocean waters, these species are widespread and often sexually dimorphic. Little is known of intra-specific variation in morphology, and many species are very similar in external appearance. A reference database of mitochondrial DNA sequences was compiled for all 20 recognised ziphiid species to aid in species identification. All reference sequences were derived from validated specimens, which were often represented only by bone or teeth. DNA was obtained from this ‘historic’ material using ‘ancient’ DNA methods. For three species, holotypes were sampled. Phylogenetic analyses using this database led to the discovery of a new, previously unrecognised species of beaked whale (Mesoplodon perrini), new specimens of Longman's beaked whale (Indopacetus pacificus), a species known previously from only two partial skulls and the synonymy of a third (M. traversii = M. bahamondi). Phylogenetic reconstructions based on sequence data from three mitochondrial and two nuclear loci (total, 2815 bp) using neighbour joining, parsimony, and maximum likelihood methods, resolved many of the sister-species relationships in this group. Inferred relationships among Mesoplodon beaked whales indicated that cranial and tooth morphology may be far more variable between closely related species than previously assumed. No support was found for a linear-progression of tooth form as suggested by Moore (1968) in his phenetic evaluation of relationships among the Ziphiidae. The geographic distribution of Mesoplodon species with similar or divergent tooth morphology is likely due to a combination of sexual selection and selection for species recognition. Both hypotheses predict similar patterns, such as dissimilar tooth morphology among species with sympatric or parapatric distributions. However, only sexual selection appears to offer an explanation for why there are so many Mesoplodon beaked whales. Investigation of mtDNA diversity among a number of beaked whale species indicated that nucleotide diversity was generally lower in this group than in other wide-ranging oceanic cetaceans. The cause of this low diversity was not clear but may be indicative of overall low abundance. Particularly low levels of diversity were found in Baird's beaked whale Berardius bairdii , Arnoux's beaked whale B. arnuxii and the northern bottlenose whale Hyperoodon ampullatus. Strong geographic structure in haplotype frequencies was observed among a worldwide sample of Cuvier's beaked whales Ziphius cavirostris. / Subscription resource available via Digital Dissertations only.

Beaked whales (family Ziphiidae) are one of the least known of all mammalian groups. The majority of species have been described from only a handful of specimens. Found in deep ocean waters, these species are widespread and often sexually dimorphic. Little is known of intra-specific variation in morphology, and many species are very similar in external appearance. A reference database of mitochondrial DNA sequences was compiled for all 20 recognised ziphiid species to aid in species identification. All reference sequences were derived from validated specimens, which were often represented only by bone or teeth. DNA was obtained from this ‘historic’ material using ‘ancient’ DNA methods. For three species, holotypes were sampled. Phylogenetic analyses using this database led to the discovery of a new, previously unrecognised species of beaked whale (Mesoplodon perrini), new specimens of Longman's beaked whale (Indopacetus pacificus), a species known previously from only two partial skulls and the synonymy of a third (M. traversii = M. bahamondi). Phylogenetic reconstructions based on sequence data from three mitochondrial and two nuclear loci (total, 2815 bp) using neighbour joining, parsimony, and maximum likelihood methods, resolved many of the sister-species relationships in this group. Inferred relationships among Mesoplodon beaked whales indicated that cranial and tooth morphology may be far more variable between closely related species than previously assumed. No support was found for a linear-progression of tooth form as suggested by Moore (1968) in his phenetic evaluation of relationships among the Ziphiidae. The geographic distribution of Mesoplodon species with similar or divergent tooth morphology is likely due to a combination of sexual selection and selection for species recognition. Both hypotheses predict similar patterns, such as dissimilar tooth morphology among species with sympatric or parapatric distributions. However, only sexual selection appears to offer an explanation for why there are so many Mesoplodon beaked whales. Investigation of mtDNA diversity among a number of beaked whale species indicated that nucleotide diversity was generally lower in this group than in other wide-ranging oceanic cetaceans. The cause of this low diversity was not clear but may be indicative of overall low abundance. Particularly low levels of diversity were found in Baird's beaked whale Berardius bairdii , Arnoux's beaked whale B. arnuxii and the northern bottlenose whale Hyperoodon ampullatus. Strong geographic structure in haplotype frequencies was observed among a worldwide sample of Cuvier's beaked whales Ziphius cavirostris. / Subscription resource available via Digital Dissertations only.

Beaked whales (family Ziphiidae) are one of the least known of all mammalian groups. The majority of species have been described from only a handful of specimens. Found in deep ocean waters, these species are widespread and often sexually dimorphic. Little is known of intra-specific variation in morphology, and many species are very similar in external appearance. A reference database of mitochondrial DNA sequences was compiled for all 20 recognised ziphiid species to aid in species identification. All reference sequences were derived from validated specimens, which were often represented only by bone or teeth. DNA was obtained from this ‘historic’ material using ‘ancient’ DNA methods. For three species, holotypes were sampled. Phylogenetic analyses using this database led to the discovery of a new, previously unrecognised species of beaked whale (Mesoplodon perrini), new specimens of Longman's beaked whale (Indopacetus pacificus), a species known previously from only two partial skulls and the synonymy of a third (M. traversii = M. bahamondi). Phylogenetic reconstructions based on sequence data from three mitochondrial and two nuclear loci (total, 2815 bp) using neighbour joining, parsimony, and maximum likelihood methods, resolved many of the sister-species relationships in this group. Inferred relationships among Mesoplodon beaked whales indicated that cranial and tooth morphology may be far more variable between closely related species than previously assumed. No support was found for a linear-progression of tooth form as suggested by Moore (1968) in his phenetic evaluation of relationships among the Ziphiidae. The geographic distribution of Mesoplodon species with similar or divergent tooth morphology is likely due to a combination of sexual selection and selection for species recognition. Both hypotheses predict similar patterns, such as dissimilar tooth morphology among species with sympatric or parapatric distributions. However, only sexual selection appears to offer an explanation for why there are so many Mesoplodon beaked whales. Investigation of mtDNA diversity among a number of beaked whale species indicated that nucleotide diversity was generally lower in this group than in other wide-ranging oceanic cetaceans. The cause of this low diversity was not clear but may be indicative of overall low abundance. Particularly low levels of diversity were found in Baird's beaked whale Berardius bairdii , Arnoux's beaked whale B. arnuxii and the northern bottlenose whale Hyperoodon ampullatus. Strong geographic structure in haplotype frequencies was observed among a worldwide sample of Cuvier's beaked whales Ziphius cavirostris. / Subscription resource available via Digital Dissertations only.

Beaked whales (family Ziphiidae) are one of the least known of all mammalian groups. The majority of species have been described from only a handful of specimens. Found in deep ocean waters, these species are widespread and often sexually dimorphic. Little is known of intra-specific variation in morphology, and many species are very similar in external appearance. A reference database of mitochondrial DNA sequences was compiled for all 20 recognised ziphiid species to aid in species identification. All reference sequences were derived from validated specimens, which were often represented only by bone or teeth. DNA was obtained from this ‘historic’ material using ‘ancient’ DNA methods. For three species, holotypes were sampled. Phylogenetic analyses using this database led to the discovery of a new, previously unrecognised species of beaked whale (Mesoplodon perrini), new specimens of Longman's beaked whale (Indopacetus pacificus), a species known previously from only two partial skulls and the synonymy of a third (M. traversii = M. bahamondi). Phylogenetic reconstructions based on sequence data from three mitochondrial and two nuclear loci (total, 2815 bp) using neighbour joining, parsimony, and maximum likelihood methods, resolved many of the sister-species relationships in this group. Inferred relationships among Mesoplodon beaked whales indicated that cranial and tooth morphology may be far more variable between closely related species than previously assumed. No support was found for a linear-progression of tooth form as suggested by Moore (1968) in his phenetic evaluation of relationships among the Ziphiidae. The geographic distribution of Mesoplodon species with similar or divergent tooth morphology is likely due to a combination of sexual selection and selection for species recognition. Both hypotheses predict similar patterns, such as dissimilar tooth morphology among species with sympatric or parapatric distributions. However, only sexual selection appears to offer an explanation for why there are so many Mesoplodon beaked whales. Investigation of mtDNA diversity among a number of beaked whale species indicated that nucleotide diversity was generally lower in this group than in other wide-ranging oceanic cetaceans. The cause of this low diversity was not clear but may be indicative of overall low abundance. Particularly low levels of diversity were found in Baird's beaked whale Berardius bairdii , Arnoux's beaked whale B. arnuxii and the northern bottlenose whale Hyperoodon ampullatus. Strong geographic structure in haplotype frequencies was observed among a worldwide sample of Cuvier's beaked whales Ziphius cavirostris. / Subscription resource available via Digital Dissertations only.

No description available.

Les suspensivores ont la tâche importante de séparer les particules de l'eau. Bien qu'une grande gamme de morphologies existe pour les structures d'alimentation, elles sont pratiquement toutes constituées de rangées de cylindres qui interagissent avec leur environnement fluide. Le mécanisme de capture des particules utilisé dépend des contraintes morphologiques, des besoins énergétiques et des conditions d'écoulement. Comme nos objectifs étaient de comprendre ces relations, nous avons eu recours à des études de comparaison pour interpréter les tendances en nature et pour comprendre les conditions qui provoquent de nouveaux fonctionnements. Nous avons utilisé la dynamique des fluides numérique (computational fluid dynamics, CFD) pour créer des expériences contrôlées et pour simplifier les analyses. Notre première étude démontre que les coûts énergétiques associés au pompage dans les espaces petits sont élevés. De plus, le CFD suggère que les fentes branchiales des ptérobranches sont des structures rudimentaires, d'un ancêtre plus grande. Ce dernier point confirme l'hypothèse qu'un ver se nourrit par filtration tel que l'ancêtre des deuterostomes. Notre deuxième étude détermine la gamme du nombre de Reynolds number critique où la performance d'un filtre de balane change. Quand le Re est très bas, les différences morphologiques n'ont pas un grand effet sur le fonctionnement. Cependant, une pagaie devient une passoire lorsque le Re se trouve entre 1 et 3,5. Le CFD s’est dévoilé être un outil très utile qui a permis d’obtenir des détails sur les microfluides. Ces études montrent comment la morphologie et les dynamiques des fluides interagissent avec la mécanisme de capture ou de structures utilisées, ainsi que comment des petits changements de taille, de forme, ou de vitesse d'écoulement peuvent conduire à un nouveau fonctionnement. / Suspension feeders have the important task of separating particles from the liquid medium surrounding them. Although a wide range of morphologies exist for feeding structures, essentially all consist of arrays of cylinders interacting with their fluid environment. The particle capture mechanism employed depends on morphological constraints, energy requirements, and flow conditions, therefore our objectives were to understand these relationships through comparison studies to interpret trends in nature and to understand the conditions in which novel functioning arises. Our studies used computational fluid dynamics (CFD) to create controlled experiments and to simplify analyses. The first study demonstrates the unfeasibly high energetic costs of pumping in small and medium pharynx sizes of hemichordates, implying the gill pores of pterobranchs are likely vestigial structures from a larger ancestor. This last point further supports the hypothesis of an acorn worm as the ancestor to all deuterostomes. Our second study determined the critical Reynolds number (Re) range where barnacle filters transition from a paddle to a sieve. At very low Re, morphological differences have no major effect on functioning and filters behave as paddles, however, at Re 1 - 3.5, these differences dictate when a paddle becomes a sieve. CFD proved to be a very useful tool for simplifying studies and providing detailed microfluidics. These studies demonstrate how morphology and fluid dynamics interact to dictate the capture mechanisms or appendages employed and how simple changes in size, shape, or flow speed can lead to novel functioning.

Les crinoïdes sont bien connus pour leurs fossiles, mais la biominéralisation de leurs stades larvaires n’est que peu documentée. La première partie du projet présente le développement des ossicules des trois stades larvaires du comatule Florometra serratissima : doliolaria, cystidienne et pentacrinoïde. Les ossicules du crinoïde démontraient de la plasticité phénotypique et de la désynchronisation dans leur développement. Les crinoïdes étant la classe basale des échinodermes modernes, ceci porte à croire que ces traits étaient aussi caractéristiques des échinodermes ancestraux et auraient joué un rôle dans la radiation hâtive et la grande disparité des échinodermes. Pour notre deuxième étude, comme les patrons de morphologie des crinoïdes et des autres échinodermes sont nombreux et sont régulés par des protéines spécifiques, nous avons vérifié la présence de quatre familles de protéines de la matrice de spicules (SMAP) connues chez les oursins dans les transcriptomes des autres échinodermes et d’autres deutérostomes. La famille des spicules matrix (SM) et l’anhydrase carbonique CARA7LA étaient absentes chez tout autre organisme que les oursins, les protéines spécifiques au mésenchyme (MSP130) étaient présentes en nombres différents chez tous les ambulacraires suggérant de multiples duplications et pertes, et les métalloprotéases étaient nombreuses chez chacun. Le développement des ossicules chez les échinodermes est un sujet qui a gagné en popularité au cours des dernières décennies, spécialement chez les oursins, et inclure les crinoïdes dans ce type d’étude permettra de nous renseigner sur l’origine et l’évolution des échinodermes modernes. / While the fossil record of crinoids is widespread and largely known, biomineralization of their larval stages is poorly documented. The first part of the project focuses on the ossicle development of the three larval stages of the feather star Florometra serratissima: doliolaria, cystidean and pentacrinoid. The ossicles of the crinoid showed phenotypic plasticity and asynchronous development. Crinoids form the basal class of living echinoderms; this prompts one to believe that these traits were also characteristic of the ancestral echinoderms and would have played a role in the early radiation and large disparity of the modern echinoderms. For the second study, as patterns of morphology of crinoids and of other echinoderms are numerous and are regulated by specific proteins, we verified the presence of four families of spicule matrix associated proteins (SMAPs) known among sea urchins in transcriptomes of the other echinoderms and deuterostomes. The family of spicule matrix (SMs) proteins and the carbonic anhydrase CARA7LA were absent in any other organism aside from sea urchins, mesenchyme specific proteins (MSP130s) were present in varying numbers in all ambulacrarians suggesting multiple duplications and losses and matrix metalloproteases were numerous in every organisms. The development of ossicles in echinoderms is a topic that has gained popularity in the last decades, especially in sea urchins, and including crinoids in this type of study will inform us about the origin and evolution of the modern echinoderms.