Gene regulation is vital to the success of all living organisms. Understanding this complex process is crucial to our knowledge of how cells function and how in some cases they can lead to debilitating or even fatal disease. In this thesis I focus on a set of DNA-binding proteins known as transcription factors (TFs), proteins fundamental to the process of gene regulation at the level of transcription. I develop assays and techniques for the detection and quantitation of TFs in vitro and in vivo as well as a method for TF encapsulation and release. The advantages of the TF detection assays in this thesis are made possible through the use of single-molecule (sm) fluorescence. This methodology enables detection of individually labeled molecules allowing discrimination of sample heterogeneities inaccessible with ensemble techniques. Here I present two different TF assays based on two sm observables: relative probe stoichiometry and Förster resonance energy transfer (FRET). The first assay design, based on stoichiometry, detects TFs using TF-dependent coincidence of two distinctly labelled DNA ‘half-sites’. I demonstrate sensitive detection (~ pM) in solution and on surfaces, multiplexed detection of multiple TFs, and detection in cell lysates. A kinetic model of the system is also developed, verified experimentally and used to quantify TF concentrations without the need for a calibration curve. The second assay design, based on FRET, is a novel approach to TF detection using TFmediated DNA bending. TFs are detected by bending the sensor and monitored with FRET at the single-molecule or ensemble level. I demonstrate TF detection in purifed form and expressed in cell lysates. As this sensor was designed for use in vivo, methods to hinder nuclease degradation are explored. For TF detection in vivo, I describe a successful strategy to internalise fluorescently labeled molecules into live E.coli. Viability and internalisation efficiency are characterised and ensemble measurements with FRET standards are demonstrated. Importantly, sm FRET measurements in vivo are achieved opening many exciting possibilities. The FRET based TF sensor is then internalised as a step towards real-time in vivo monitoring of TF concentrations. Finally a system based on DNA nanotechnology is presented for the non-covalent encapsulation and release of TFs. Such a system could be delivered into a cell to alter levels of gene expression using external stimuli as inputs. We believe these tools will generate valuable information in the study of prokaryotic gene expression as well as providing a potential commercial avenue towards diagnostics.

Synaptic transmission in the nervous system involves the activation of receptor proteins that permit rapid transmembrane fluxes of ions. Ionic gradients across the membrane determine the direction and driving force for the flow of ions and are therefore crucial in setting the properties of synaptic transmission. These ionic gradients are established by a variety of mechanisms, including pump and transporter proteins. However, the gradients can be affected by periods of neural activity, which in turn, are predicted to influence the properties of ongoing synaptic transmission. In this thesis I have examined the concentration gradients of two ions that play a fundamental role in synaptic transmission: chloride ions (Cl-) and protons (H+). Type A γ-Aminobutyric acid receptors (GABAARs) are primarily permeable to Cl- and mediate the majority of fast post-synaptic inhibition in the brain. The transmembrane concentration gradient for Cl- is therefore a critical parameter in governing the strength of synaptic inhibition. In the first part of the Thesis I use a combination of experimental and theoretical approaches to demonstrate that influxes of Cl- via activated GABAARs can overwhelm a neurons ability to maintain a stable Cl- concentration gradient. The consequence is that subsequent activation of GABAARs results in weaker inhibition or even excitation, which alters how the neuron integrates synaptic inputs. This process is shown to be dependent upon the level of activity of the GABAAR, the post-synaptic cells membrane potential and the cellular compartment into which the Cl- flows. These principles were extended to demonstrate that popular optogenetic strategies for silencing neural activity have different effects upon GABAAR transmission. A light-activated Cl- pump was shown to cause substantial accumulations in intracellular Cl, which meant that the strength of synaptic inhibition was significantly reduced following light offset. In the second part of the Thesis I use electrophysiological and fluorescence imaging techniques to demonstrate that the activation of GABAARs during epileptiform activity results in pronounced changes to the transmembrane Cl- gradient. Indeed, these changes convert synaptic inhibition into synaptic excitation during the course of a seizure event. As part of this work I characterise a novel, genetically-encoded reporter for measuring intracellular Cl- dynamics in different cell types and subcellular compartments. A significant advantage of this reporter is that it permits the simultaneous quantification of H+ fluxes, which are also shown to change in an activity-dependent manner and which have been a confounding factor for previous Cl- reporters. In the third and final part of the Thesis I use genetically-encoded reporters to investigate activity-dependent changes in intracellular H+ concentration. I demonstrate that markedly different pH changes occur in neurons and astrocytes during epileptiform activity. Whereas neurons become acidic, astrocytes become alkaline and the dynamics of these pH shifts exhibit a very different temporal relationship with the seizure event. In conclusion, this thesis demonstrates that the intracellular concentrations of Cl- and H+ are dynamic variables that evolve across time and space, in an activity-dependent manner. Changes in the transmembrane gradients of these two ions influence ongoing synaptic transmission. Therefore this work has significant implications for our understanding of network activity and the balance of synaptic excitation and inhibition.

This thesis aims to investigate the possibility of developing spectroscopic techniques for trace gas detection, with particular emphasis on their applicability to breath analysis and medical diagnostics. Whilst key breath molecules such as methane and carbon dioxide will feature throughout this work, the focus of the research is on the detection of breath acetone, a molecule strongly linked with the diabetic condition. Preliminary studies into the suitability of cavity enhanced absorption spectroscopy (CEAS) for the analysis of breath are carried out on methane, a molecule found in varying quantities in breath depending on whether the subject is a methane-producer or not. A telecommunications near-infrared semiconductor diode laser (1.6 µm) is used with an optical cavity based detection system to probe transitions within the vibrational overtone of methane. Achieving a minimum detectable sensitivity of 600 ppb, the device is used to analyse the breath of 48 volunteers, identifying approximately one in three as methane producers. Following this, a second type of laser source, the novel and widely tunable Digital Supermode Distributed Bragg Reflector (DS-DBR) laser, is characterised and the first demonstration of its use in spectroscopy documented. Particular emphasis is given to its application to CEAS and to probing the transitions of the two Fermi resonance components of the CO_2 3ν_1 + ν_3 combination bands found within the spectral range (1.56 - 1.61 µm) of the laser, providing the means to determine accurate ^{13}CO_2/^{12}CO_2 ratios for use in the urea breath test. Not all molecules exhibit narrow, well-resolved ro-vibrational transitions and the next section of the thesis focuses on the detection of molecules, such as acetone, with broad, congested absorption features which are not readily discernible using narrowband laser sources. To provide the necessary specificity for these molecules, two types of broadband source, a Superluminescent Light Emitting Diode (SLED) and a Supercontinuum source (SC), both emitting over the 1.6 - 1.7 µm region, are used in the development of a series of broadband cavity enhanced absorption (BB-CEAS) spectrometers. The three broadband absorbers investigated here, butadiene, acetone and isoprene, all exhibit overtone and combination bands in this spectral region and direct absorption measurements are taken to determine absorption cross-sections for all three molecules. The first BB-CEAS spectrometer couples the SLED device with a dispersive monochromator, attaining a minimum detectable sensitivity of 6 x 10^{-8} cm^{-1}, which is further enhanced to 1.5 x 10^{-8} cm^{-1} on replacing the monochromator with a Fourier Transform interferometer. The spectral coverage is then extended to 1.5 - 1.7 µm by coupling the first SLED with a second device, providing a demonstration of simultaneous multiple species detection. Finally, a SC source is used to provide greater power and uniform spectral intensity, resulting in an improved minimum detectable sensitivity of 5 x 10^{-9} cm^{-1}, or 200 ppb, 400 ppb and 200 ppb for butadiene, acetone and isoprene respectively. This device is then applied to acetone-enriched breath samples; the resulting spectra are fitted with a simulation to return the acetone levels present in the breath-matrix. Following this, the development of a prototype breath acetone analyser, carried out at Oxford Medical Diagnostics Ltd. (OMD), is described. To fulfill the requirements of a compact and commercially-viable device, a diode laser-based system is used, which necessitates a thorough investigation into all possible sources of absorption level change. Most notably, this includes a study into the removal and negating of interfering species, such as water vapour, and to a lesser extent, methane. A novel solution is presented, utilising a water-removal device in conjunction with molecular sieve so that each breath sample generates its own background, which has allowed breath acetone levels to be measured within an uncertainty of 200 ppb. Spectroscopic detection then moves to the mid-infrared with the demonstration of a continuous wave 8 µm quantum cascade laser, which allows the larger absorption cross-sections associated with fundamental vibrational modes to be probed. Following the laser's characterisation using methane, including a wavelength modulation spectroscopy study, the low effective laser linewidth is utilised to resolve rotational structure in low pressure samples of pure acetone. Absorption cross-sections are determined before the sensitivity of the system is enhanced for the detection of dilute concentrations of acetone using two types of multipass cells, firstly a White cell and secondly a home-built Herriott cell. This allows an acetone minimum detectable absorption of 350 ppb and 20 ppb to be attained, respectively. Following this, an optical cavity is constructed and, on treating breath samples in a water-removal device prior to analysis, breath acetone levels determined and corroborated with a mass spectrometer. Finally, a preliminary study probing acetone in the ultraviolet is presented. Utilising an LED centred at 280 nm with a low finesse optical cavity and an imaging spectrograph, detection of 25 ppm of acetone is demonstrated and possible vibronic structure resolved. Combining large absorption cross-sections with the potential to be compact and commercially viable, further development of this arrangement could ultimately represent the optimum solution for breath acetone detection.

Engineered protein nanopores can be used to investigate a wide range of dynamic processes in real time and at the single-molecule level, for example covalent bond making and breaking or the interaction of ligands with their cognate binding sites. The detection of such processes is accomplished by monitoring the current carried by ions through the pore in an applied potential, which is modulated as molecules of interest interact with engineered binding sites within the pore. In contrast to ensemble measurements, where the behaviour of individual molecules is obscured by averaging, single-channel recordings can identify short-lived intermediates and rare reaction pathways, thereby adding to our understanding of fundamental processes in chemistry and biology. The goal of my thesis work was to engineer alpha-hemolysin (αHL) pores to gain insight into such processes. <b>Chapter 1</b> provides an overview of common techniques used to study single- molecule processes, in particular single channel recordings. General techniques to engineer ion channels and pores are presented, followed by examples of how the alpha-HL pore has been engineered to monitor dynamic processes at the single- molecule level. <b>Chapter 2</b> describes how alpha-HL pores can be chemically modifeed with a tridentate "half-chelator" ligand. Single channel recordings show that this modifeed pore can be used to determine rates of chelation and the stability of divalent metal ion complexes. The modifeed pore can also be used as a stochastic sensor for the detection of different divalent metal ions in solution. <b>Chapter 3</b> investigates the chelate-cooperativity between two half-chelator ligands installed in close proximity in the alpha-HL pore, as they form a full complex with a single Zn²⁺ ion. The single channel recordings reveal a two step process, in which the Zn²⁺ ion must fiferst bind to one of the two half-chelators, before the second one completes the complex. The rate constants for all the major steps of the process are determined and the extent of cooperativity between the half-chelators is quantifeed. <b>Chapter 4</b> demonstrates that genetically encoded subunit dimers of alpha-HL can be used to control the subunit arrangement in the heptameric pore. Although techniques exist to prepare heteroheptameric pores, pores containing more than one type of modifeed subunit are not commonly used because it is impossible to distinguish between the permutations of the pore. By using subunit dimers, heptamers in which two defefined subunits are adjacent to each other can be formed, which increases the range of structures that can be obtained from engineered protein nanopores. <b>Chapter 5</b> explores the possibility of following the nuclease activity of a metal complex in the alpha-HL pore at the single-molecule level. The Rh(III) complex [Rh(bpy)2phzi]²⁺ binds strongly to CC mismatches in dsDNA, and on activation with UV light promotes the cleavage of one of the two strands. To follow this reaction by single channel recording, a piece of dsDNA with the bound Rh-complex was immobilised in the HL pore and the single current changes under UV irradiation were monitored. The preliminary data indicate that the rate of the photocleavage reaction can be measured.

Single-molecule detection has provided insights into how molecules behave. Without the averaging effect of ensemble measurements, the stochastic behaviour of single molecules can be observed and intermediate steps in multistep transformations can be clearly detected. The single-molecule reactants range from small molecules (e.g. propene) to proteins of several tens of kDa (e.g. myosin). One single-molecule detection technique is single-channel electrical recording. This approach is based on the measurement of the transmembrane ionic current flowing through a nanoscale transmembrane pore under an applied potential. In this thesis, the protein α-hemolysin was employed as a nanoreactor. α-Hemolysin is a toxin secreted by Staphylococcus aureus. Its transmembrane pore (~100 Å in length and ≥14 Å in diameter) allows ions, water and small molecules to pass through its lumen. Under an applied potential, chemical changes in reactants attached to the internal wall of the pore modulate the flow of ions, leading to changes in the transmembrane ionic current. Analysis of this current provides information about the reaction kinetics and mechanisms. Chapter 1 – Single-Molecule Chemistry and α-Hemolysin is an introductory chapter that is divided into two parts. Section 1.1 provides an overview of the different techniques for the detection of chemical reactions at the single-molecule level. Section 1.2 gives a brief review of the protein pore α-hemolysin, including its structure, properties and various applications. Chapter 2 – S-Nitrosothiol Chemistry applies cysteine-containing α-hemolysins to study the biologically relevant chemistry of S-nitrosothiols (RSNO). RSNO are important molecules involved in cell signalling, which control physiological processes such as vasodilation and bronchodilation. Three reactions, namely transnitrosation (the transfer of the ‘NO’ group from RSNO to a thiol), S-thiolation (the formation of a disulfide from RSNO and thiol) and S-sulfonation (the generation of an S-sulfonate (RSSO₃⁻) from RSNO and sulfite ion), were investigated at the single-molecule level. The pH-dependency of the two competing reactions (transnitrosation and S-thiolation), the lifetime of the proposed transnitrosation intermediate, and nature of the chemical reaction between RSNO and sulfite (a bronchoconstrictor) were determined. Chapter 3 – Silver(I)-thiolate and cadmium(II)-thiolate complexes describes the kinetics of the formation and breakdown of these two metal-thiolate complexes. Ag⁺ and Cd²⁺ are commonly used in probing the membrane topology and gating properties of ion channels using the scanning cysteine accessibility method (SCAM). The binding of two Ag⁺ ions per thiol group and the stepwise build-up and dissociation of Cd²⁺-glutathione complexes were unambiguously characterized. Chapter 4 – Copper(II)-Catalyzed Diels-Alder Reactions reports the attempt to carry out copper(II)-catalyzed Diels-Alder reactions inside an engineered α-hemolysin. An iminodiacetate ligand was covalently attached within the lumen of the α-hemolysin pore. This ligand chelates Cu²⁺ ion, which can bind bidentate dienophiles and activate them towards Diels-Alder reaction with dienes. However, due to the ‘slow’ reaction rate of the Diels-Alder reaction (rate constant ~10⁻¹ M⁻¹s⁻) relative to the time-scale of the single-molecule experiment, we failed to observed chemical conversion at the single-molecule level. Nevertheless, the engineered metal-binding α-hemolysin may be useful for sensing molecules bearing metal-coordinating groups.

This thesis presented the study of carbon-based materials for ultra-sensitive molecular sensing. Reduced Graphene Oxide (rGO), a 2-dimensional one-atomic layer thick carbon material, had the advantage of low-cost, aqueous and industrial-scalable production route. Using rGO as the transducer platform could potentially lower the cost of sensors down to a few dollars per chip. However, there were still limitations in rGO that prevented its widespread usage as a biosensor transducer or in electronics: its low electrical conductivity and large electrical deviations. This thesis was structured to understand and solve these problems for transducer application. The thesis could be broken down into 3 parts: The first part of the thesis presented the critical review of the background and limitations of graphene research, followed by the background and importance of biosensor developments for the detection of sweat sodium ions and circulatory Interleukin-6 proteins. The second part of the thesis tested the hypothesis that the rGO limitations could be eliminated to create a highly sensitive biosensor transducer via (A) improving rGO synthesis (B) pristine Carbon Nanotubes-rGO hybrid film and (C) growth of rGO. The mechanism of ultra-large graphene oxide synthesis and graphene oxide growth was also elucidated in this section. The third part of the thesis then presented the fabrication and test of the practical and homogenous carbon-based biosensor using the transducer synthesized earlier. The thesis showed that through proving the hypothesis correct, it enabled the synthesis of an all organic sodium ion sensor with integrated pump and an ultra-sensitive interleukin-6 bio-sensor. Both of these novel sensors were able to detect the respective molecules in their physiological ranges.

Bacterial chemotaxis is the movement of bacteria towards or away from chemical stimuli in the surrounding media. Bacteria respond to chemotactic signals through chemoreceptors which bind specific ligands and transduce signals through a modified two-component system. Typical chemoreceptors bind a ligand in the periplasm and signal across the inner membrane to the cytoplasmic chemosensory array through the inner membrane. Bacterial chemoreceptors must integrate multiple signals within an array of different receptor homologues to a single output. Chemoreceptors act cooperatively to allow a rapid signal spread across the array and large signal gain. Chemoreceptors adapt to a signal by chemical modification of their cytoplasmic domains in order respond across a wide range of effector concentrations. How bacterial chemoreceptors transduce signals through the inner membrane, integrate multiple effector responses, signal cooperatively and adapt to result in a single output signal is not currently fully known. In Rhodobacter sphaeroides, additional complexity arises from the presence of multiple homologues of various chemotactic components, notably the array scaffold protein CheW. Decoding this signalling mechanism and heterogeneity involved in this system is important in decoding the action of a biological system, with implications for biotechnology and synthetic biology. This study used the two model systems Escherichia coli and R. sphaeroides to analyse the mechanism of signalling through bacterial chemoreceptors. Rational design of activity-shifting chemoreceptor mutations was undertaken and these variants were analysed in phenotypic and fluorescence localisation studies. Molecular-dynamics simulations showed an increase in flexibility of chemoreceptors corresponds to a decrease in kinase output activity, which was determined by the computational tracking of bacteria free-swimming in media. Fluorescence recovery after photobleaching was used to show that this increase in flexibility results in a decrease in binding of receptors to their array scaffold proteins. A two-hybrid screen also suggested that inter-receptor affinity is also likely to decrease. These results show that signalling through chemoreceptors is likely through a mechanism involving the selective flexibility of chemoreceptor cytoplasmic domains. Analysis of R. sphaeroides chemoreceptors and CheW scaffold proteins in E. coli showed that it should be possible to design, from the bottom-up, a functional bacterial chemotaxis system in order to analyse individual protein specificity. Expression of R. sphaeroides MCPs in this E. coli system show the reconstitution of a chemotactic array, but not one capable of signalling specifically to proposed attractants. Results gained from this system suggest the R. sphaeroides CheW proteins are not homologous and their differential binding affinities may allow array activity 'fine-tuning'.

La D-sérine, co-agoniste endogène du récepteur N-Méthyl D-Aspartate, est impliquée à la fois dans des fonctions physiologiques telles que l'apprentissage et le vieillissement et dans des pathologies psychiatriques et neurodégénératives comme la schizophrénie ou la sclérose latérale amyotrophique. Ce travail de thèse est composé de deux parties. Premièrement, je me suis intéressée aux mécanismes de régulation de la D-sérine extracellulaire. A l'aide de biocapteurs enzymatiques développés au laboratoire, nous avons évalué, in vivo, la diffusion de la D-sérine à travers la barrière hématoencéphalique et estimé sa concentration dans différents compartiments. Nous avons aussi montré que la recapture de la D-sérine est assurée par les transporteurs de type ASC et que sa dégradation est effectuée par la D-amino acide oxydase dans le cervelet et par la sérine racémase dans le cortex. Deuxièmement, j'ai étudié l'implication de la D-sérine dans le status épilepticus, un modèle présentant une forte excitotoxicité avérée. Nous avons tout d'abord développé une méthode de comptage automatique pour quantifier précisément la mort neuronale. Puis nous avons enregistré les concentrations de D-sérine et de glutamate extracellulaires lors du status épilepticus et nous avons montré que ces deux transmetteurs ont leur concentration augmentée dans le cortex piriforme/amygdale, zones fortement touchées par l'excitotoxicité. En revanche dans le cortex où il n'y a pas de perte neuronale excitotoxique, leur concentration reste inchangée. Mieux comprendre la régulation de la D-sérine et son rôle pathologique est essentiel pour développer et adapter des traitements / D-serine, an endogenous agonist of the N-methyl-D aspartate receptor, is implicated both in physiological functions like learning, aging and in psychiatric and neurodegenerative diseases like schizophrenia and amyotrophic lateral sclerosis. This thesis work is composed of two parts. First, I studied the mechanisms regulating D-serine extracellular concentration in the brain. With biosensors developed in the laboratory, we evaluated D-serine diffusion across the blood brain barrier and estimated its concentration in different compartments in vivo. We have shown that D-serine reuptake is mediated by ASC transporters and that its degradation relies on D-amino Acid oxidase in the cerebellum and on serine racemase in the cortex. Second, I have study the implication of D-serine in neuronal lesions produced by status epilepticus, a pathological model in which excitotoxicity is demonstrated. We have developed an automatic software to determine the density of neurons in a brain slice and identify the brain regions with most neuronal lesions following status epilepticus. We have then recorded the extracellular D-serine and glutamate concentration during status epilepticus and demonstrated that the concentration of both transmitters is increased in piriform cortex/amygdala, area corresponding to extended excitotoxic neuronal death. However, in the cortex, an area without excitotoxic neuronal death, D-serine and glutamate concentration are constant. Understanding D-serine regulation and its pathological implication is essential to develop new treatment for protecting the neuronal tissue against excitotoxic insult

Orientador: Valber de Albuquerque Pedrosa / Resumo: Neste trabalho foram desenvolvidas metodologias para detecção de biomarcadores cancerígenos utilizando sensores aptaméricos. Aptâmeros são estruturas tridimensionais de DNA/RNA capazes de serem seletivos a alvos específicos. O uso destas sequências em plataformas eletroquímicas permite que o monitoramento do metabolismo celular se torne viável de uma forma rápida e exata. Para a caracterização das superfícies foram utilizadas as técnicas eletroquímicas. Foram utilizadas três proteínas biomarcadoras, PSA, fPSA e HK2 como modelos para os estudos. Os limites de detecção do aptasensor para PSA e fPSA obtidos foram de 1,1 ng/mL e 2,9 ng/mL, respectivamente. Ao final dos experimentos com linhagens celulares cancerígenas e controle, as correspondentes corroboraram com a classificação de risco do câncer de próstata bem como a capacidade de diferenciação por parte dos aptasensores entre os tipos celulares mais agressivos (PC-3, [PSA]: 23 ng/mL; [fPSA]: 6 ng/mL) e menos agressivos (LNCaP, [PSA]:12 ng/mL; [fPSA]: 7,8 ng/mL) em comparação aos grupos de referência (PNT-2, [PSA]: 1,95ng/mL; [fPSA]: 2,11 ng/mL). Para a HK2, foi possível detecta-lá na presença de todos os tipos celulares prostáticos de maneira qualitativa. / Mestre

Essa tese de doutoramento utiliza a auto-organização dos filmes finos layer-by-layer (LbL), auto-organização por alcanotióis mistas (SAMmix) e monocamada de Langmuir no desenvolvimento de dispositivos e novas metodologias para aplicações em nanomedicina. Foram desenvolvidos e aplicados biossensores utilizando as técnicas de LbL e SAM. Dentre os biossensores construídos está o sensor para óxido nítrico (NO&bull;), que é de grande importância no sistema fisiológico. O sensor foi construído por meio da modificação de ultramicroeletrodos de fibra de carbono pela técnica LbL. A caracterização do sensor foi realizada por voltametrias e espectroscopias de impedância eletroquímica. Os resultados revelaram que a difusão de NO&bull; é dependente do número de bicamadas empregadas e da disposição das moléculas no filme. O sensor com arquitetura CF-(PAMAM/NiTsPc), fibra de carbono (CF), ftalocianina de níquel tetrasulfonada (NiTsPc) e dendrímero poliamidoamina (PAMAM), apresentou o melhor sinal analítico. Além disso, foi analisada a detecção de NO&bull; com interferentes como nitrito, nitrato, peróxido de hidrogênio, ácido ascórbico, dopamina, epinefrina e a norepinefrina. Os resultados mostraram alta seletividade devido à utilização do dendrímero PAMAM. O segundo biossensor utilizou a enzima acetilcolinesterase imobilizada em monocamadas auto-organizadas mistas (SAMmix) de alcanotióis. A detecção eletroquímica mostrou-se altamente sensível, uma vez que não há o uso do glutaraldeído como agente reticulante. Com essa plataforma foi possível desenvolver um biossensor de acetilcolina estável e robusto, sendo calculado o valor de Km app = 0,46x10-3 mol L-1, limite de detecção LD=3,32x10-10 mol L-1 e limite de quantificação LQ=1,11x10-9 mol L-1, valores inferiores aos encontrados na literatura, ressaltando a eficiencia da nova plataforma. Seguindo a mesma idéia de auto-organização, foram realizados estudos de nanotoxicidade utilizando modelos de membrana a partir de filmes de Langmuir. O principal objetivo foi elucidar a ação dos nanotubos de carbono (SWCNT), PAMAM e do nanocomplexo entre os dois materiais (SWCNT-PAMAM) nas membranas celulares, a nível molecular, usando um sistema modelo de membrana. A penetração de SWCNT e dos nanocomplexos em monocamadas lipídicas foi estudada utilizando microscopia de ângulo de Brewster (BAM) simultaneamente com cinética de absorção e pressão de superfície. Os resultados confirmaram a interação entre os nanomateriais e a membrana, indicando que a presença dos nanomateriais afeta o empacotamento dos lipídios. Foram realizados ainda estudos de citotoxicidade dos mesmos nanomateriais em sistemas celulares in vitro. Os resultados de citometria, proliferação celular, morfologia e inibição de adesão apresentaram-se evidenciaram que a combinação entre SWCNT e PAMAM, proporciona um maior índice de toxicidade em relação ao SWCNT, um comportamento diferente do que relatado nos componentes individuais. A toxicidade de nanocomplexos de SWCNT-PAMAM e de seus componentes individuais podem estar fortemente ligados ao tipo de material e como estes estão disponíveis no meio de cultura. Os estudos contidos nessa tese mostram a versatilidade dos filmes finos em sistemas auto-organizados e biomiméticos, e podem ser relevantes para o avanço de pesquisas sobre interação de nanomateriais e biossistemas. / In this thesis we employed the concept of self-organization, including the layer-by-layer (LbL) technique, alkanethiols self-assembled monolayers (SAMmix) and Langmuir monolayers, to develop new methods for materials and devices manipulation for application in nanomedicine. Two different types of biosensors were developed. The first one was based on the LbL technique to detect nitric oxide (NO&bull;), which is of great importance in the medicine. The second biosensor was based on SAM monolayers supporting acetylcholinesterase for pesticide monitoring. The NO&bull; was constructed by modified carbon fiber (CF) assembled with nickel phtalocyanine tetrasulfonade (NiTsPc) and polyamidoamine dendrimer (PAMAM) in the form of ultramicroelectrodes (UMEs) by the LbL technique. The sensor was characterized using differential pulse voltammetry and electrochemical impedance spectroscopy. The results showed that NO&bull; diffusion is dependent on the number of bilayers employed and the arrangement of molecules in the film. The sensor architecture with CF-(PAMAM/NiTsPc) presented the best analytical signal. In addition, we analyzed the detection of interfering with NO&bull; as nitrite, nitrate, hydrogen peroxide, ascorbic acid, dopamine, epinephrine and norepinephrine. The results showed high selectivity due to the use of PAMAM dendrimer as selective layer. The second biosensor used the enzyme acetylcholinesterase immobilized on SAMmix. The electrochemical detection of carbaryl was highly sensitive, since there is no use of glutaraldehyde as crosslinking agent. Using acetylcholine as a probe, Kmapp value was determined at 0.46x10-3 mol L-1, with detection limit of 3.32x10-10 mol L-1 and quantification limit of 1.11x10-9 mol L-1, values lower than those found in the literature, highlighting the efficiency of the new platform. Langmuir films made of lipids were employed as cell membrane models, in order to investigate the interactions between single-wall carbon nanotubes (SWCNT), PAMAM and their nanocomplex (SWCNT-PAMAM) at the molecular level. The interation of SWCNT and nanocomplexes in lipid monolayers was studies using Brewster angle microscopy (BAM) in conjunction with absorption kinetics and surface pressure. The results confirmed the interaction between nanomaterials and the membrane, indicating that the presence of nanomaterials affects the packing of the lipids. Cytotoxicity studies were also employed to investigate the interaction of nanomaterials in in vitro cell systems. The results of flow cytometry, cell proliferation, morphology and inhibition of adhesion revealed the toxicological aspects of the materials, demonstrating a higher toxicity to the nanocomplex, compared to SWCNT, differently of the individual components. The toxicity of SWCNT nanocomplex and its individual components can be related to the type of material and how these materials are available in the culture medium. The studies in this thesis show the versatility of self-assembly thin films on biomimetic systems and may be relevant to the advance of research on the interaction of nanomaterials and biosystems.