Brain gliomas represent a heterogeneous group of tumors of various histological subtypes which differ according to their response to treatment and prognosis. Tumors created from astrocytes and oligodendrocytes occur most often. Histological classification of gliomas is often subjective, as well as their treatment today is still problematic. The aim of this diploma thesis was to carry out a detailed molecular cytogenetic analysis of the genome of tumor cells in patients with histologically confirmed brain gliomas of different subtypes and stages of malignancy, look for recurrent aberration-specific subtypes and assess their potential role in the development and progression of cancer. To observation specific frequency known aberrations in different subtypes of brain tumors, we used the method of interphase FISH (I-FISH) with a panel of specific locus and / or centromeric DNA probes. The whole genome analysis and detection of cryptic unbalanced changes in the genome of tumor cells, we used the method of SNP array. Combining methods I- FISH and SNP array was detected not only the known chromosomal changes that are typical of the different subtypes of tumors, but also new or uncommon recurrent aberrations. In patients with low-grade gliomas are the most commonly observed acquired UPD (aUPD) on the short...

(in English) Air pollution is a serious worldwide problem associated with the risk of cancer. The negative effect of carcinogenic polycyclic aromatic hydrocarbons (c-PAHs), including benzo[a]pyrene (B[a]P), on human health is analyzed using specific biomarkers. Among them biomarkers of early effect play an important role. This work summarizes the results of cytogenetic analyses performed by fluorescence in situ hybridization (FISH) (whole chromosome painting of chromosomes #1 and #4) and automated image analysis of micronuclei (MN). During the analyses a total set of 1304 samples was analyzed by the FISH method and 885 samples by the automated image analysis of MN. Studied groups including city policemen, garage men, bus drivers, administrative workers, mothers, newborns, healthy children and children with bronchial asthma and laboratory workers were from Prague, Ostrava and Ceske Budejovice. The locations significantly differed in levels of air pollutants and the type of air pollution. The exposure of participants of the study was assessed by personal and stationary monitoring. The impact of other factors including age, smoking or intake of vitamins was also evaluated in these studies. The results obtained by the FISH method in Prague showed the impact of seasonal variability of concentrations of...

Human pluripotent stem cells are increasingly used for cell-based regenerative therapies worldwide, with the use of embryonic and induced pluripotent stem cells as potential treatments for a range of debilitating and chronic conditions. However, with the level of chromosomal aneuploidies the cells may generate in culture, their safety for therapeutic use could be in question. This study aimed to develop sensitive and high-throughput assays for the detection and quantification of human pluripotent stem cell aneuploidies, to assess any changes in their positioning in nuclei, as well as investigate the possible roles of lamins in the accumulation of aneuploidies. Using Droplet Digital PCR™, we optimised the detection of aneuploid cells in a predominantly diploid background. An assay was established for the sensitive detection of up to 1% of mosaicism and was used for the monitoring of low-level chromosome copy number changes across different cell lines, conditions and passages in the human pluripotent stem cells. In addition, fluorescence in-situ hybridisation was used to map genes ALB and AMELX on chromosomes 4 and X, respectively, in karyotype-stable chromosome X aneuploid lymphoblastoid cell lines. Our results demonstrated significant alternations in the gene loci positioning in the chromosome X aneuploid cell lines. Using the same established method, the positioning of ALB and AMELX was monitored, alongside the genomic instability with ddPCR™, in the different human pluripotent stem cell lines, conditions and passage. We demonstrated a highly plastic nuclear organisation in the pluripotent stem cells with many changes occurring within a single passage. Furthermore, these results were not exclusive to a single cell line or condition, regardless of the presence or absence of feeder cells and of passage number, and the flexibility of the chromatin organisation remained throughout the duration of the study. We demonstrated high levels of genomic instability with recurrent gains and losses in the AMELX copy number in the human embryonic stem cells during the course of our study, however no significant changes in their gene loci positioning from these abnormalities were observed. xvi | P a g e Additionally, we observed reduced levels of lamin B2 in the aneuploid lymphoblastoid cell lines and complete loss in some hPSC samples. Our results support recent findings that suggest a link between lamin B2 loss and the formation of chromosome aneuploidies in cell culture. In conclusion, our data demonstrates several key novel findings. Firstly, we have established a sensitive technique for the detection of up to 1% mosaicism, which to our knowledge is the most sensitive assay currently available. Secondly, we showed significant changes in the gene loci positioning between aneuploid and diploid cell lines. Thirdly, utilising our novel ddPCR™ assay, we demonstrated the karyotypical instability of hPCSs with consistent gains and/or loses of gene copy numbers in a short period of time in culture. When studying the effects of different growth conditions, we showed that the karyotypical instability was not exclusive to a single condition or a combination of conditions, and what is more, the karyotypical abnormalities detected were not observed to change the gene positioning of hPSCs significantly, with the genome organisation remaining plastic. Finally, our results support a potential association of lamin B2 loss and karyotypical instability. We conclude that more sensitive and robust techniques need to be readily used by clinicians for the screening of potential therapeutic hPSCs.

Fortschritte in der molekulargenetischen Charakterisierung von Tumorerkrankungen haben in den letzten Jahren die klinische Praxis zunehmend beeinflusst. Das Ziel dieser Arbeit war die Untersuchung von astrozytären Tumoren der WHO-Grade II bis IV und ihre Subtypisierung anhand der gefundenen chromosomalen Aberrationen. Ferner sollte der Einfluss der gefundenen Aberrationen auf klinische Parameter wie das Gesamtüberleben oder die rezidivfreie Zeit untersucht werden. Dazu wurden paraffinfixierte Proben von insgesamt 184 primären astrozytären Tumoren (28 low-grade Astrozytome, 6 low-grade Oligoastrozytome, 50 anaplastische Astrozytome, 4 anaplastische Oligoastrozytome, 96 Glioblastoma multiforme) mit der Comparativen Genomischen Hybridisierung (CGH) untersucht. Häufige Aberrationen in allen Malignitätsgruppen stellten chromosomale Zugewinne auf Chromosom 7 sowie Verluste von Chromosom 10 und 9p dar. High-grade Astrozytome zeigten ferner häufig Zugewinne von Chromosom 19 und 20 sowie Verluste von 13q, 14q und 15q. WHO-Grad-II-Astrozytome wiesen häufig Zugewinne auf Chromosom 8 sowie Verluste von Chromosom 4q und 6q auf. Eine kürzeres Gesamtüberleben zeigten high-grade Gliome mit Verlusten von Chromosom 10q und Zugewinnen auf 7p. In Glioblastomen verursachten zusätzlich Zugewinne auf 7q sowie Verluste von 14q, in anaplastischen Astrozytomen zusätzlich Verluste von 10p ein verringertes Gesamtüberleben. WHO-Grad-II-Astrozytome zeigten bei Verlusten von 3p ein schlechteres Gesamtüberleben. Chromosomale Aberrationen, die zu einem verlängerten Gesamtüberleben führten, waren Verluste von 1p und Zugewinne von 10p in WHO-Grad-III-Tumoren. Die rezidivfreie Zeit wurde in high-grade Gliomen durch Zugewinne auf 7p und Verluste von 10p verringert. Eine Verkürzung der rezidivfreien Zeit in Glioblastomen zeigten außerdem Tumoren mit Verlusten von 7q, 10q und 14q. In anaplastischen Astrozytomen führten Verluste von 1p und 19q sowie Zugewinne auf 8q und 10p, in WHO-Grad-II-Astrozytomen Verluste von Chromosom 6 zu einer verlängerten Zeit bis zum Rezidiv. Die Anfertigung onkogenetischer Baummodelle stellte verschiedene genetische Wege der Tumorgenese dar. Ein Cluster war gekennzeichnet durch einen Verlust von 6q, ein weiterer wurde initialisiert durch den Verlust von 13q, der dritte durch den Verlust von 9p. Der vierte Cluster wurde charakterisiert durch Zugewinne auf Chromosom 7 und Verluste von Chromosom 10, während der fünfte Cluster Zugewinne auf 8q sowie Verluste von 4q aufwies.

PAIVA, Jean Carlos Gomes. Biomonitoring genetic of farmers exposed to pesticides in the municipalities of Tiangua and Ubajara (Ceará, Brazil). 2011. 111 f. : Tese (doutorado) - Universidade Federal do Ceará, Programa de Pós-Graduação em Biotecnologia, Renorbio - Rede Nordeste de Biotecnologia. 2011. / Submitted by demia Maia (demiamlm@gmail.com) on 2016-05-23T17:19:06Z No. of bitstreams: 1 2011_tese_jcgpaiva.pdf: 2591728 bytes, checksum: 4776344bdee5aac282c66c0a37608507 (MD5) / Approved for entry into archive by demia Maia (demiamlm@gmail.com) on 2016-05-23T17:19:52Z (GMT) No. of bitstreams: 1 2011_tese_jcgpaiva.pdf: 2591728 bytes, checksum: 4776344bdee5aac282c66c0a37608507 (MD5) / Made available in DSpace on 2016-05-23T17:19:52Z (GMT). No. of bitstreams: 1 2011_tese_jcgpaiva.pdf: 2591728 bytes, checksum: 4776344bdee5aac282c66c0a37608507 (MD5) Previous issue date: 2011

Made available in DSpace on 2014-10-09T12:45:37Z (GMT). No. of bitstreams: 0 / Made available in DSpace on 2014-10-09T14:08:41Z (GMT). No. of bitstreams: 0 / Tese (Doutoramento) / IPEN/T / Instituto de Pesquisas Energeticas e Nucleares - IPEN/CNEN-SP

Submitted by Claudinei Pracidelli (cpracide@ipen.br) on 2015-07-23T11:16:06Z No. of bitstreams: 0 / Made available in DSpace on 2015-07-23T11:16:06Z (GMT). No. of bitstreams: 0 / Dissertação (Mestrado em Tecnologia Nuclear) / IPEN/D / Instituto de Pesquisas Energeticas e Nucleares - IPEN-CNEN/SP

Made available in DSpace on 2014-10-09T12:45:37Z (GMT). No. of bitstreams: 0 / Made available in DSpace on 2014-10-09T14:08:41Z (GMT). No. of bitstreams: 0 / O 153Sm-EDTMP é um radiofármaco utilizado em medicina nuclear com resultados promissores no alívio da dor metastática. No entanto, pouco se sabe sobre os efeitos do 153Sm-EDTMP em nível celular. O presente trabalho foi conduzido com o intuito de avaliar os efeitos citogenéticos do 153Sm-EDTMP em linfócitos periféricos de pacientes com metástases ósseas (com e sem radio e/ou quimioterapias anteriores) pela da técnica de detecção de aberrações cromossômicas, tanto in vivo como in vitro. Para tanto, as amostras sangüíneas foram coletadas antes e 1 hora após a administração endovenosa do 153Sm- EDTMP (atividade média de 42,53 + 5,31 MBq/kg de peso corpóreo), levando-se em consideração o rápido clearance sangüíneo. Os principais tipos de aberrações cromossômicas estruturais encontrados foram os gaps e quebras, fragmentos acêntricos, anéis cêntricos, double minutes e dicêntricos. A análise estatística mostrou que o único grupo de pacientes que apresentou uma diferença significativa na freqüência de aberrações cromossômicas 1 hora após o tratamento foi o que recebeu prévio tratamento radio e quimioterápico antes da terapia com 153Sm-EDTMP. Quanto a averiguação do número modal de cromossomos e da cinética do ciclo celular, a análise estatística mostrou que não houve diferença significativa entre os grupos analisados, sugerindo que o tratamento com 153Sm-EDTMP não influenciou nesses parâmetros. A molécula carreadora, EDTMP, não teve qualquer influência na indução de aberrações cromossômicas. Em relação aos ensaios in vitro, os dados obtidos de linfócitos periféricos submetidos às diferentes concentrações radioativas de 153Sm-EDTMP (0,046 – 1,110 MBq/mL) de doadores sadios e de pacientes sem prévio tratamento se ajustaram melhor ao modelo de regressão linear (Y=A+BX). O dano cromossômico induzido pelo 153Sm-EDTMP observado in vitro foi cerca de 2 vezes maior do que o encontrado in vivo para o grupo de pacientes sem prévio tratamento. Os dados obtidos mostraram que a terapia com 153Sm-EDTMP induziu uma pequena quantidade de danos citogenéticos em linfócitos periféricos de pacientes 1 hora após sua administração, embora, teoricamente, um efeito estocástico a longo prazo não possa ser descartado. / Tese (Doutoramento) / IPEN/T / Instituto de Pesquisas Energeticas e Nucleares - IPEN/CNEN-SP

Submitted by Claudinei Pracidelli (cpracide@ipen.br) on 2015-07-23T11:16:06Z No. of bitstreams: 0 / Made available in DSpace on 2015-07-23T11:16:06Z (GMT). No. of bitstreams: 0 / O presente trabalho é resultado da colaboração de pesquisadores do Centro de Engenharia Nuclear (CEN) e de pesquisadores do Centro de Biotecnologia (CB), ambos pertencentes ao IPEN, para o desenvolvimento de uma metodologia que visa auxiliar os profissionais citogeneticistas fornecendo uma ferramenta que automatize parte da rotina necessária para a avaliação qualitativa e quantitativa de danos biológicos em termos de aberração cromossômica. A técnica citogenética, sobre a qual esta ferramenta é desenvolvida, é a técnica de aberrações cromossômicas. Nela, são realizadas preparações citológicas de linfócitos de sangue periférico para que metáfases sejam analisadas e fotografadas ao microscópio e, com base na morfologia dos cromossomos, anomalias sejam investigadas. Quando esta tarefa é realizada manualmente, os cromossomos são analisados visualmente um a um pelo profissional citogeneticista, logo, trata-se de um processo minucioso em virtude da variação geral na aparência do cromossomo, do seu tamanho pequeno e do grande número de cromossomos por célula. Para um diagnóstico confiável, é necessário que várias células sejam analisadas, tornando-se uma tarefa repetitiva e demorada. Neste contexto, foi proposto o uso dos mapas auto-organizáveis para o reconhecimento automático de padrões morfológicos referentes às imagens de cromossomos humanos. Para isso, foi desenvolvido um método de extração de características por meio do qual é possível classificar os cromossomos em: dicêntricos, anéis, acrocêntricos, submetacêntricos e metacêntricos, com acerto de 93,4 % em relação ao diagnóstico dado por um profissional citogeneticista. / Dissertação (Mestrado em Tecnologia Nuclear) / IPEN/D / Instituto de Pesquisas Energeticas e Nucleares - IPEN-CNEN/SP

Orientador: Alexandre Nunes Ponezi / Dissertação (mestrado) - Universidade Estadual de Campinas, Faculdade de Engenharia Civil, Arquitetura e Urbanismo / Made available in DSpace on 2018-08-21T07:25:38Z (GMT). No. of bitstreams: 1 Torres_DaniladeLeoneFrancaeFreitas_M.pdf: 2036503 bytes, checksum: 068ab775d9c675592e34d0bfdd2ca1e9 (MD5) Previous issue date: 2012 / Resumo: O uso de efluente tratado na agricultura irrigada constitui uma alternativa adequada para a preservação de mananciais, além de ser uma importante fonte de nutrientes. No entanto, os riscos de toxicidade devem ser avaliados. Testes ecotoxicológicos apresentam-se como uma ferramenta apropriada, devido à sensibilidade dos organismos e sua ampla aceitação por órgãos governamentais e científicos. O objetivo do presente estudo foi avaliar a toxicidade aguda na fotobactéria marinha Vibrio fischeri e no microcrustáceo Daphnia similis (CE50) e do potencial citotóxico, genotóxico e mutagênico em Allium cepa (cebola) de um efluente sanitário tratado usado para irrigação. Os ensaios foram realizados no efluente bruto e nos tratados utilizados para irrigação: anaeróbio e pos-tratamento anaeróbio (nitrificado). Os resultados evidenciaram que o efluente bruto, apresentou uma maior variação dos valores de CE50 para ambos os organismos. O efluente anaeróbio apresentou um efeito tóxico agudo maior para V. fischeri que para D. similis. Já o nitrificado (pos-tratamento anaeróbio) apresentou uma toxicidade aguda menor para ambos os organismos testados. Na avaliação das aberrações cromossômicas em A. cepa, os efluentes tratados apresentaram uma redução do potencial citotóxico (p<0,05) em relação ao efluente bruto. Pode-se concluir que os testes escolhidos foram adequados para o monitoramento do efluente. Recomenda-se que o uso de efluente tratado na agricultura seja realizado de forma regrada, atentando para os padrões de Boas Práticas Agrícolas (GAP) e de toxicidade. Além disso, em escala real é necessário um estudo de monitoramento periódico que avalie impactos a longo prazo, incluindo testes de toxicidade crônica / Abstract: The use of the treated effluent in agriculture has proven to be an important alternative, since its preservation of water and its potential as source of nutrients, with low potential for negative impact on the environment. However, toxicity remains an important issue. Ecotoxicological tests are appropriate tools to evaluate the toxicity of effluents. The aim of this study was to evaluate acute toxicity on marine bacteria Vibrio fischeri, on micro crustacean Daphnia similis (EC50) and on Allium cepa (onion) (assessment of cytotoxic, mutagenic and genotoxic potencial) in treated sanitary effluent used for irrigation. We tested the raw effluent, and in its treatments, used for irrigation: anaerobic and anaerobic posttreatment (nitrified). Our results showed that the raw effluent had a greater variation of EC50 for both organisms, due to an intrinsic variability of its composition. The anaerobic effluent had a greater acute toxic effect on V. fischeri than for D. similis. Yet, the nitrified (anaerobic post-treatment stage) showed a lower toxicity for both tested organisms. We found a reduction in the citotoxical potential in A. cepa as compared to the raw efluente. We concluded that the tests chosen were adequate for monitoring the effluent since the organisms showed adequate sensitivity. It is therefore suggested that the use of treated wastewater in agriculture should be standardized, noting Good Agricultural Practices (GAP) and toxicity stardards. Furthermore for larger scale assumption it is necessary a periodic monitoring study to assess long term impacts, including chronic toxicity tests / Mestrado / Saneamento e Ambiente / Mestra em Engenharia Civil