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abstract: The overall goal of this research project was to assess the feasibility of investigating the effects of microgravity on mineralization systems in unit gravity environments. If possible to perform these studies in unit gravity earth environments, such as earth, such systems can offer markedly less costly and more concerted research efforts to study these vitally important systems. Expected outcomes from easily accessible test environments and more tractable studies include the development of more advanced and adaptive material systems, including biological systems, particularly as humans ponder human exploration in deep space. The specific focus of the research was the design and development of a prototypical experimental test system that could preliminarily meet the challenging design specifications required of such test systems. Guided by a more unified theoretical foundation and building upon concept design and development heuristics, assessment of the feasibility of two experimental test systems was explored. Test System I was a rotating wall reactor experimental system that closely followed the specifications of a similar test system, Synthecon, designed by NASA contractors and thus closely mimicked microgravity conditions of the space shuttle and station. The latter includes terminal velocity conditions experienced by both innate material systems, as well as, biological systems, including living tissue and humans but has the ability to extend to include those material test systems associated with mineralization processes. Test System II is comprised of a unique vertical column design that offered more easily controlled fluid mechanical test conditions over a much wider flow regime that was necessary to achieving terminal velocities under free convection-less conditions that are important in mineralization processes. Preliminary results indicate that Test System II offers distinct advantages in studying microgravity effects in test systems operating in unit gravity environments and particularly when investigating mineralization and related processes. Verification of the Test System II was performed on validating microgravity effects on calcite mineralization processes reported earlier others. There studies were conducted on calcite mineralization in fixed-wing, reduced gravity aircraft, known as the `vomit comet' where reduced gravity conditions are include for very short (~20second) time periods. Preliminary results indicate that test systems, such as test system II, can be devised to assess microgravity conditions in unit gravity environments, such as earth. Furthermore, the preliminary data obtained on calcite formation suggest that strictly physicochemical mechanisms may be the dominant factors that control adaptation in materials processes, a theory first proposed by Liu et al. Thus the result of this study may also help shine a light on the problem of early osteoporosis in astronauts and long term interest in deep space exploration. / Dissertation/Thesis / M.S. Bioengineering 2013

Diferentes estratégias de flotação (reagentes, pH e rota) têm sido utilizadas na separação entre apatita e carbonatos em todo o mundo. Há evidências na literatura de que a cristalinidade afeta a flotação de apatitas e calcitas com oleato de sódio. Além disso, a dissolução dos sais semi-solúveis pode influenciar a interação entre a superfície dos minerais e os reagentes de flotação, uma vez que o mecanismo de adsorção mais importante é a precipitação de oleato de cálcio na interface sólido/líquido. Portanto, o objetivo deste trabalho é investigar a relação entre cristalinidade, cinética de dissolução e resposta à flotação de apatitas e calcitas de diferentes gêneses (ígnea, metamórfica e sedimentar) e origens. Quatro tipos de minerais foram utilizados: purificados a partir de minérios, previamente purificados, naturalmente puros e amostras de coleção. As amostras foram caracterizadas por fluorescência de raios-X e microanálise (WDS/EDS). Características físicas como densidade (d), área superficial (S) e porosidade (P) também foram determinadas. O método de Rietveld aplicado à difração de raios-X foi usado tanto para comprovar a pureza das amostras como para estudar a cristalinidade dos minerais por meio da determinação dos parâmetros de rede (distâncias a e c, e volume da cela unitária- VCU), além do grau de cristalinidade (GC), tamanho de cristalito (TC) e microdeformação (MD). Ensaios de dissolução, conduzidos na ausência de CO2, forneceram a quantidade (mol) de íons Ca2+ (nCa2+) dissolvidos em função do tempo (t) e normalizada em relação à área superficial. Os resultados se ajustam a um modelo de primeira ordem: nCa2+ = Ca2+MAX(1- e-kt). Este procedimento permitiu calcular os valores da quantidade máxima de íons Ca2+ dissolvidos (Ca2+MAX), bem como da constante cinética (k). Além disso, a velocidade de dissolução foi determinada para a etapa rápida (VR), que caracteriza o início da reação, e para a etapa lenta (VL), que ocorre nas proximidades do estado estacionário. A resposta à flotação com oleato de sódio foi determinada por meio de experimentos de microflotação. Várias relações de causa e efeito são encontradas: flotabilidade (F) versus VR, e VR versus características intrínsecas (parâmetros de rede, de cristalinidade e físicos). VR foi selecionado para participar de tais modelos, pois, caracteriza o intervalo de tempo em que o condicionamento (1 minuto) e a microflotação (1 minuto) ocorrem. Observa-se que a flotabilidade dos minerais aumenta com o aumento de VR, sugerindo que apatitas e calcitas que disponibilizam mais íons Ca2+ em solução para interagir com o oleato, exibem mais elevada flotabilidade. Equações lineares de F em função de VR em pH 8 (R = 0,97 para apatitas e R = 0,66 para calcitas) e pH 10 (R = 0,95 para apatitas e R = 0,63 para calcitas) foram encontradas. Correlações lineares múltiplas foram utilizadas para relacionar VR (em pH 8 e 10) com as características intrínsecas que exercem maior influência sobre este parâmetro. Para as apatitas, VR foi equacionado em função de GC, TC e c, enquanto para as calcitas, os parâmetros GC, TC, d e P foram selecionados para compor o modelo. Os valores de VR calculados se ajustam aos observados dentro de um intervalo de confiança de 95%. As equações lineares propostas para as apatitas foram usadas para se estimar F das amostras de Anitápolis-SC e Tapira-MG, que não foram submetidas aos ensaios de dissolução. Os valores de F calculados estão em concordância com aqueles experimentalmente determinados. / Different flotation strategies (reagents, pH and route) have been adopted to separate apatite from carbonates around the world. Literature provides evidences that crystallinity affects flotation response of apatite and calcite with sodium oleate. Furthermore, dissolution of salt-type minerals influences the interaction between mineral surface and flotation reagents, because the most important adsorption mechanism is the surface precipitation of calcium oleate onto mineral/water interface. Therefore, the objective of this research is to investigate the relationship between crystallinity, dissolution kinetics and flotation response of apatites and calcites from different genesis (igneous, metamorphic and sedimentary) and origins. Four sorts of minerals were utilized: minerals purified from ores, minerals previously purified, naturally pure minerals and collection samples. They were characterized by X-ray fluorescence and X-ray microanalysis (WDS/EDS). Physical characteristics, as specific gravity (d), surface area (S) and porosity (P), were also determined. The Rietveld method applied to X-ray diffraction data was used either to probe the purity of samples or to study the crystallinity of the minerals by means of determining their lattice parameters (a and c dimensions plus lattice volume-VCU), in addition to crystallinity degree (GC), crystallite size (TC) and microstrain (MD). Dissolution experiments, conducted in the absence of CO2, yielded curves which relate the amount (mol) of dissolved Ca2+ ions (nCa2+) versus time (t), normalized by the surface area. They fit a first order model: nCa2+ = Ca2+MAX(1- e-kt). Curve fitting via exponential adjustment was accomplished to calculate values of the maximum amount of dissolved Ca2+ ions (Ca2+MAX) and the kinetic constant (k). In addition, the dissolution rate was determined for the fast step (VR), which characterizes the beginning of the reaction, and for the slow step (VL), as it tends to the steady state. Flotation response with sodium oleate was determined by microflotation experiments. Several cause-effect relationships are found: floatability (F) versus VR, and VR versus intrinsic characteristics of minerals (lattice, crystallinity and physical parameters). VR was selected to participate in the model because it characterizes the length of time along which reagent conditioning (1 minute) plus microflotation (1 minute) take place. It is observed that F increases as VR becomes greater, suggesting that samples of apatites and calcites which place more Ca2+ ions in solution to interact with oleate exhibit higher flotation performance. Linear equations of F versus VR at pH 8 (R = 0,97 for apatites and R = 0,66 for calcites) and pH 10 (R = 0,95 for apatites and R = 0,63 for calcites) were found. Likewise, multiple linear correlations were used to relate VR (at pH 8 and 10) with the intrinsic characteristics of apatites and calcites that affect VR to a greater extent. For apatites, VR was modeled as a function of GC, TC and c, while for calcites, the parameters GC, TC d and P were selected to compose the model. The calculated VR values fit the experimental ones within 95% of confidence. The linear equations developed for apatites were used to estimate floatability of the samples from Anitápolis-SC and Tapira-MG, which were not submitted to dissolution experiments. The values of calculated floatability are in agreement with the experimental ones.

Carbonate rocks consider as significant reservoirs for hydrocarbon. More than 60% of the world's hydrocarbon is placed in carbonate reservoirs. Carbonate rocks are heterogeneous and contain complex pore system. This complexity causes the hydrocarbon recovery from these reservoirs difficult; having less than 35% of hydrocarbon is being recovered. The heterogeneity and the variation in pore system are a result of various depositional settings and successive diagenetic overprints. Diagenetic overprints account for most of the pore system complexity in subsurface. This project undertakes one of the important diagenetic processes, calcite cementation, which though to have major impact on reservoir quality. The project aims to better understand the controls on calcite cementation in five Lower Cretaceous Reservoirs, in particular the role of calcite cementation with relation to oil charge in reservoir quality. Other diagenetic processes were also asses including dolomitization, dissolution, micritization and chemical compaction. The five reservoirs (A, B, C, F & G) are from Field A which is located in Abu Dhabi, UAE. The reservoirs comprise of interbedded porous "Reservoir" and low porosity-permeability "Dense" limestones deposited in broad range of settings, ranging from restricted to open marine platform. Reservoir intervals are part of HSTs, deposited during higher sea level time. The dense intervals were deposited during TST and thought to be cemented early resulting in early compartmentalization in all reservoirs. The mMg/Ca and in-situ (SIMS) δ18OVPDB were measured through complete calcite cement stratigraphy obtained from equant, syntaxial and blocky calcite in all reservoirs. Both mMg/Ca and δ18OVPDB of oldest calcite cement zone are matching with published mMg/Ca and δ18OVPDB of Lower Cretaceous, suggesting precipitation from Lower Cretaceous seawater. The mMg/Ca and δ18OVPDB also vary from reservoir to another reflecting change in Cretaceous seawater. These data also coincide with trace element observations particularly Mn and Sr. All these parameters show fluctuations in Cretaceous seawater during 135-123Ma caused by global changes in climate and oceanic crust production rates. Lower reservoirs including F (133Ma) and C (130Ma) were more probably affected by the Hauterivian global cooling which resulted in higher δ18OVPDB in the early precipitated cements. Precipitation in upper Reservoir B (126Ma) was most likely affected by the abrupt warm episode just before the OAE1. Reservoir A (123Ma) precipitation may be affected by the Early Aptian cooling episode and the OAE1. Reservoir G is the only one not recording δ18OVPDB similar of Cretaceous seawater. Cementation in Reservoir G was affected by depleted δ18OVPDB fluids from early stage, perhaps hot, basinal waters. More interestingly, the mMg/Ca, δ18OVPDB Mn and Sr means of younger calcite cement zones which thought to be evolved during burial show similar trend to the oldest cement zones with various offsets. This suggests that calcite cement in each reservoir evolved in a relatively close system inferring by this that the reservoirs are compartmentalized. The compartmentalization is probably due to the sysedimentary or early cemented hardgrounds in the Dense Zones. The Dense Zones acted as seals for the reservoirs from early stage causing the later precipitated calcite cement which is diagenetically affected to behave in predictable and similar way. Moreover, calcite precipitation temperatures inferred from mMg/Ca and δ18OVPDB show progressive increase towards younger cement zones indicating fluid evolution with burial in also relatively close system. In-situ δ18OVPDB and oil inclusions suggest earlier oil charge in the shallower reservoirs compared with deeper reservoirs and coeval water leg. Consequently, cementation in the shallower reservoirs continued with lower rate and hence preserved some primary and secondary pores. Conversely, in the water leg cementation continue to occlude most of the pore spaces. Furthermore, early oil emplacement in the shallower reservoirs increased the cementation temperature of calcite in the oil leg to reach maximum precipitation temperatures of ~144˚C. Whereas, in the water leg and deeper reservoirs, cementation continued to a temperature of ~110˚C. Overall, reservoir quality in Thamama Group was affected by various diagenetic processes. Some have resulted in reservoir quality enhancement such as dolimitization which involves formation of microporosity as a result of replacive rhombic dolomite, dissolution particularly the late one which believed to be due organic acid, and micritization with yield microporosity particularly in Reservoir B. Open fractures might have also enhanced reservoir quality to some extent. Diagenetic events that have deteriorated reservoir quality include calcite and saddle dolomite cementation as well as stylolitization. Greater calcite cementation can be found in water leg compared with oil leg because oil thought to decrease cementation rate.

L'étude de la cristallisation du carbonate de calcium sur un substrat d'or monocristallin (111) évaporé thermiquement sur du mica présente un grand intérêt pour la recherche de nouveaux matériaux finement accordés. La présente étude a pour but de former par voie électrochimique et d'une manière contrôlée de la calcite épitaxiée sans utilisation de templates. Les dépôts formés sur le cuivre massif et le cuivre, l'argent et l'or orientés sont analysés par la microscopie électronique à balayage (MEB) couplée à l'analyse élémentaire EDS, la diffraction des électrons rétrodiffusés (EBSD), la diffraction des rayons X (DRX), la spectroscopie Raman et la spectroscopie d'impédance électrochimique (SIE). La précipitation du carbonate de calcium est induite par voie électrochimique en imposant le potentiel de réduction de l'oxygène dissous qui permet une augmentation du pH local à l'interface métal/solution. Une formation réussite de calcite épitaxiée est observée sur l'or et l'argent avec une orientation (001) parallèle à la surface des substrats tandis que deux variétés cristallographiques sont observées sur le substrat polycristallin (calcite et vatérite) et seule la calcite est précipitée sur le cuivre monocristallin sous différentes formes rhomboédriques. A la lumière de ces résultats une relation d'épitaxie est établie. L'effet des ions sulfate, magnésium et phosphate est étudié vis-à-vis de la nucléation-croissance et sur l'orientation de la calcite. Enfin, deux molécules (MEDPHOS et l'acide isonicotinique) sont testées quant à leur pouvoir inhibant sur la cristallisation de la calcite.

This thesis presents ab-initio quantum mechanical calculations at the density functional theory (DFT) level on defect centers hosted by crystalline systems of geologic importance (i.e. fluorite, quartz, stishovite). The research brings new, complementary data to the current understanding of defect structures in minerals and explores the advantages of a theoretical approach in the field of mineral spectroscopy. This present research presents the first ab-initio calculations of the O23- type defects in crystalline solids. New data on the electronic properties and structural characteristics of O23--Y3+ defect in fluorite-type structures (CaF2 and SrF2) were obtained at the DFT level. These results confirm the stability and the molecular character of the O23--Y3+ center, revealing a spin density that is equally distributed between the two oxygen atoms. Our results report an O-O bond distance of 2.47 Å in CaF2 and 2.57 Å in SrF2. The calculated 17O and 19F hyperfine constants for of the O23--Y3+ center are in good agreement with their corresponding experimental values reported by previous electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) studies, while discrepancies are notable for the 89Y hyperfine constants and are probably attributable to an inadequate basis set for Y.<p> The present study provides a more complete picture of the coupled Al-M substitution for Si in quartz, while investigating the characteristics and electronic properties of the diamagnetic [AlO4/M+]0 (where M = H, Li, Na and K) defects. The diamagnetic [AlO4/M+(a<)]0 defects with M = H, Li and Na have been shown to be more stable than their [AlO4/M+(a>)]0 structural analogues (where a> and a< denote the location of the charge compensating ion on the long-bond and short-bond side, respectively), correctly predicting the common occurrence of paramagnetic [AlO4/M+(a>)]+ centers. The present study confirms previous suggestions that incorporation of the [AlO4/M+]0 defects results in significant structural relaxations that extend at least to the nearest Si atoms. The [AlO4/K+]0 defects have been investigated for the first time and are shown to be stable in quartz. The results of this study have implications for the uptake of Al in quartz.<p> The present research evaluates the structural models of [AlO4/Li] paramagnetic defects in α-quartz. The results confirm the previous experimental findings and propose an additional paramagnetic defect [AlO4/Li+(csmall)]+, with the unpaired electron located on a short-bonded O atom and the Li compensator just off the edge of the small channel. Accordingly we suggest that three distinct Al-Li paramagnetic defects can be can be found in quartz, two of them having the hole located on a short-bonded O and one trapping the hole on a long-bonded O atom. However the structural similarities with the [AlO4/Li+(a>)]+ defect would require detection and measurement of the 17O hyperfine structure for an unequivocal EPR identification.<p> The present work also reports on first-principles quantum-mechanical calculations on the previously proposed [O23--Al3+] defect in stishovite. Our results show that the unpaired spin is 85% localised on one of the six oxygen atoms at an AlO6 octahedron, while the calculated 27Al hyperfine constants are similar to those determined by EPR experiments. Accordingly we propose the Al center to represent an [AlO6]0 defect, and hole hoping among equivalent oxygen atoms is responsible for its detection only at cryogenic temperatures. Theoretical calculations also show that diamagnetic precursors [AlO6/H+]0, [AlO6/Li+]0 and [AlO6/Na+]0 are stable in stishovite. The calculated OH bond distance and orientation are in excellent agreement with those inferred from FTIR spectra and previous theoretical calculations. The calculated [AlO6/Li+]0 and [AlO6/Na+]0 defects suggest that monovalent cations such as Li+ and Na+ are potentially important in accommodating Al in stishovite in the lower mantle.

This thesis presents ab-initio quantum mechanical calculations at the density functional theory (DFT) level on defect centers hosted by crystalline systems of geologic importance (i.e. fluorite, quartz, stishovite). The research brings new, complementary data to the current understanding of defect structures in minerals and explores the advantages of a theoretical approach in the field of mineral spectroscopy. This present research presents the first ab-initio calculations of the O23- type defects in crystalline solids. New data on the electronic properties and structural characteristics of O23--Y3+ defect in fluorite-type structures (CaF2 and SrF2) were obtained at the DFT level. These results confirm the stability and the molecular character of the O23--Y3+ center, revealing a spin density that is equally distributed between the two oxygen atoms. Our results report an O-O bond distance of 2.47 Å in CaF2 and 2.57 Å in SrF2. The calculated 17O and 19F hyperfine constants for of the O23--Y3+ center are in good agreement with their corresponding experimental values reported by previous electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) studies, while discrepancies are notable for the 89Y hyperfine constants and are probably attributable to an inadequate basis set for Y.<p> The present study provides a more complete picture of the coupled Al-M substitution for Si in quartz, while investigating the characteristics and electronic properties of the diamagnetic [AlO4/M+]0 (where M = H, Li, Na and K) defects. The diamagnetic [AlO4/M+(a<)]0 defects with M = H, Li and Na have been shown to be more stable than their [AlO4/M+(a>)]0 structural analogues (where a> and a< denote the location of the charge compensating ion on the long-bond and short-bond side, respectively), correctly predicting the common occurrence of paramagnetic [AlO4/M+(a>)]+ centers. The present study confirms previous suggestions that incorporation of the [AlO4/M+]0 defects results in significant structural relaxations that extend at least to the nearest Si atoms. The [AlO4/K+]0 defects have been investigated for the first time and are shown to be stable in quartz. The results of this study have implications for the uptake of Al in quartz.<p> The present research evaluates the structural models of [AlO4/Li] paramagnetic defects in α-quartz. The results confirm the previous experimental findings and propose an additional paramagnetic defect [AlO4/Li+(csmall)]+, with the unpaired electron located on a short-bonded O atom and the Li compensator just off the edge of the small channel. Accordingly we suggest that three distinct Al-Li paramagnetic defects can be can be found in quartz, two of them having the hole located on a short-bonded O and one trapping the hole on a long-bonded O atom. However the structural similarities with the [AlO4/Li+(a>)]+ defect would require detection and measurement of the 17O hyperfine structure for an unequivocal EPR identification.<p> The present work also reports on first-principles quantum-mechanical calculations on the previously proposed [O23--Al3+] defect in stishovite. Our results show that the unpaired spin is 85% localised on one of the six oxygen atoms at an AlO6 octahedron, while the calculated 27Al hyperfine constants are similar to those determined by EPR experiments. Accordingly we propose the Al center to represent an [AlO6]0 defect, and hole hoping among equivalent oxygen atoms is responsible for its detection only at cryogenic temperatures. Theoretical calculations also show that diamagnetic precursors [AlO6/H+]0, [AlO6/Li+]0 and [AlO6/Na+]0 are stable in stishovite. The calculated OH bond distance and orientation are in excellent agreement with those inferred from FTIR spectra and previous theoretical calculations. The calculated [AlO6/Li+]0 and [AlO6/Na+]0 defects suggest that monovalent cations such as Li+ and Na+ are potentially important in accommodating Al in stishovite in the lower mantle.

The scope of work can be divided into; the measurement of the rheological properties of a new emulsified acid system that can be suitable for high temperature applications, a study of the performance of the new emulsified acid in stimulating both calcite and dolomite formations, measuring the reaction rate and diffusion coefficient when the new emulsified acid systems react with both calcite and dolomite, and testing the new emulsified acid using core samples obtained from carbonate reservoirs. The droplet size has a practical impact on the performance of emulsified acid. A good understanding and characterization of the emulsified acid by its size distribution will lead to better understanding of its stability, rheology and how it reacts with carbonate rocks. The influence of the concentration of the new emulsifier on the droplet size, droplet size distribution and upon the rheology of emulsified acids is studied in detail. The emulsified acid reaction kinetics with calcite rocks was studied before in few studies, and very little work was done with dolomite. One of the main objectives of the present work is to study in detail the reaction of the emulsified acid with both calcite and dolomite rocks using the rotating disk apparatus. Most of the previous studies on the emulsified acid were done using core samples that were saturated with brine or deionized water. One of the main objectives of the present work is to study in detail the effect of the presence of crude oil in the reservoir rock on the performance of emulsified acids. Lastly, an innovative technique of emulsifying the chelating agents is evaluated for high temperature applications. The rheology of the emulsified chelating agent is measured using an HPHT rheometer. Also, the reaction of the new emulsified chelating agent with calcite is studied using the rotating disk apparatus, and coreflood experiments were performed using chelating agents and calcite core samples.

Coal balls are carbonate concretions formed in peat during the Pennsylvanian and early Permian. Microprobe and microscope analysis reveal that polycrystals of high-Mg calcite (HMC), which are also high in Sr, are the earliest calcium carbonate to form in the Williamson No. 3 coal balls from the Kalo formation in Iowa. This HMC has early diagenetic rims of ferroan and non-ferroan low-Mg calcite (LMC) suggesting diagenesis in meteoric water. The combination of HMC followed by LMC suggests the earliest coal ball carbonate formed in a hydrologically dynamic environment, where saltwater influx into the mire was followed by a return to meteoric pore water. Subsequent generations of carbonate are ferroan and non-ferroan LMC and appear to result from diagenesis of the original HMC fabric with LMC rims. HMC polycrystals from coal balls are among the first abiotic HMC to be reported from the mid-Pennsylvanian; coal balls may be a good source of Pennsylvanian HMC. Coal balls that formed in porous peat (i.e. wood and surficial leaf mats) commonly have abundant radiating arrays of HMC polycrystals. Coal balls that formed in matrix-rich, low porosity peats consist primarily of permineralizing anhedral calcite, which is ferroan LMC. The link between the HMC and porous permeable peat is supported by the distribution of HMC and ferroan LMC in plant cells. Wood cells, which have porous walls, are filled with HMC; fiber cells, which have impermeable walls, are filled with ferroan LMC. This study demonstrates a link between pore volume, porosity, plant cell type, and carbonate fabric.

Thesis (Ph.D.) -- McMaster University, 1997. / Includes bibliographical references (leaves107-123). Also available via World Wide Web.