A considerable part of the global pool of terrestrial carbon is stored in high latitude soils. In these soils, repeated cycles of freezing and thawing creates soil motion (cryoturbation) that in combination with other cryogenic disturbance processes may play a profound role in controlling the carbon balance of the arctic soil. Conditions for cryogenic soil processes are predicted to dramatically change in response to the ongoing climate warming, but little is known how these changes may affect the ability of arctic soils to accumulate carbon. In this thesis, I utilize a patterned ground system, referred to as non-sorted circles, as experimental units and quantify how cryogenic soil processes affect plant communities and carbon fluxes in arctic soils. I show that the cryoturbation has been an important mechanism for transporting carbon downwards in the studied soil over the last millennia. Interestingly, burial of organic material by cryoturbation appears to have mainly occurred during bioclimatic events occurring around A.D. 900-1250 and A.D. 1650-1950 as indicated by inferred 14C ages. Using a novel photogrammetric approach, I estimate that about 0.2-0.8 % of the carbon pool is annually subjected to a net downward transport induced by the physical motion of soil. Even though this flux seems small, it suggests that cryoturbation is an important transporter of carbon over centennial and millennial timescales and contributes to translocate organic matter to deeper soil layers where respiration proceeds at slow rates. Cryogenic processes not only affect the trajectories of the soil carbon, but also generate plant community changes in both species composition and abundance, as indicated by a conducted plant survey on non-sorted circles subjected to variable differential frost heave during the winter. Here, disturbance-tolerant plant species, such as Carex capillaris and Tofieldia pusilla, seem to be favoured by disturbance generated by the differential heave. Comparison with findings from a previous plant survey on the site conducted in the 1980s suggest that the warmer temperatures during the last decades have resulted in decreased differential heave in the studied non-sorted circles. I argue that this change in cryogenic activity has increased abundance of plants present in the 1980s. The fact that the activity and function of the non-sorted circles in Abisko are undergoing changes is further supported by their contemporary carbon dioxide (CO2) fluxes. Here, my measurements of CO2 fluxes suggest that all studied non-sorted circles act as net CO2 sources and thus that the carbon balance of the soils are in a transition state. My results highlight the complex but important relationship between cryogenic soil processes and the carbon balance of arctic soils.

It is increasingly being recognized that the soil microbes can mineralize recalcitrant soil organic matter (SOM) by using the fresh carbon (C) as a source of energy, a process called priming effect (PE). It has been shown mostly in lab incubations that PE can have important consequences for sequestration of organic C in soils. However, the importance of PE in C and N dynamics of ecosystems remains little known. The soil-plant interactions and rhizospheric processes can modulate the rates of PE and its consequences on C and N dynamics in an ecosystem. The objective of this thesis was to determine the role of PE in the C and N dynamics of permanent grasslands and the modulation of this role in response to management (plant clipping, fertilization) and global warming. Moreover, it was aimed to identify the microbial groups involved in PE and to unravel the way, e.g. absorption of N, root exudations and litter deposition, by which plant can induce PE. The thesis was based on a new approach allowing continuous dual labelling of multiple grassland plants with 13C- and 14C-CO2. The dual labelling permitted the separation of soil-derived CO2 from plant-derived CO2, the calculation of PE and the determination of mean age of soil-derived CO2-C. Moreover, phospholipids fatty-acids analysis (PLFA) permitted to correlate the variation of PE with changes in microbial community composition. Our work showed that the increased SOM mineralization under grasses was consistently two to three times more than that in bare soils (i.e. PE) over long term (511 days). This reveals that the PE plays key role in ecosystem CO2-C flux and indicates that a very large pool of SOM is under the control of PE. Moreover, we report that 15,000 years old organic C from an undisturbed deep soil can be mineralized after the supply of fresh C by living plants to soil microbes. This result supports the idea that the SOM in deep soils is stable due to the energy-limitation of microbes and the ‘inert' pool of organic C defined in current models is not so ‘inert' finally. The supply of N in soil-plant system through the use of fertilizer or legume decreased the PE suggesting that the C storage in soils is limited by nutrient supply. Similarly, plant clipping reduced the plant N uptake thereby PE. Collectively these results suggest synchronization between plant N uptake and SOM mineralization supporting the idea that soils under permanent plant cover function as a bank of nutrients for the plant, maximizing plant productivity and nutrient retention. An innovative method clearly showed that the root exudation is the major way by which grassland plants induce PE. Moreover, saprophytic fungi are suggested as the key actors in the mineralization of recalcitrant SOM & PE. Lastly, we developed a new theory on temperature response of SOM mineralization by taking into account the energy-limitation of microbes and the temperature-dependent inactivation of enzymes. This theory predicts a negative relationship between temperature and mineralization of recalcitrant SOM, which was supported by experimental results. This finding challenges the classical paradigm of positive relationship between temperature and recalcitrant SOM mineralization. Overall, these investigations on plant-soil systems reinforce the idea that PE and underlying mechanisms play a key role in ecosystem C and N dynamics and even suggest that this role was underestimated in lab experiments. / It is increasingly being recognized that the soil microbes can mineralize recalcitrant soil organic matter (SOM) by using the fresh carbon (C) as a source of energy, a process called priming effect (PE). It has been shown mostly in lab incubations that PE can have important consequences for sequestration of organic C in soils. However, the importance of PE in C and N dynamics of ecosystems remains little known. The soil-plant interactions and rhizospheric processes can modulate the rates of PE and its consequences on C and N dynamics in an ecosystem. The objective of this thesis was to determine the role of PE in the C and N dynamics of permanent grasslands and the modulation of this role in response to management (plant clipping, fertilization) and global warming. Moreover, it was aimed to identify the microbial groups involved in PE and to unravel the way, e.g. absorption of N, root exudations and litter deposition, by which plant can induce PE. The thesis was based on a new approach allowing continuous dual labelling of multiple grassland plants with 13C- and 14C-CO2. The dual labelling permitted the separation of soil-derived CO2 from plant-derived CO2, the calculation of PE and the determination of mean age of soil-derived CO2-C. Moreover, phospholipids fatty-acids analysis (PLFA) permitted to correlate the variation of PE with changes in microbial community composition. Our work showed that the increased SOM mineralization under grasses was consistently two to three times more than that in bare soils (i.e. PE) over long term (511 days). This reveals that the PE plays key role in ecosystem CO2-C flux and indicates that a very large pool of SOM is under the control of PE. Moreover, we report that 15,000 years old organic C from an undisturbed deep soil can be mineralized after the supply of fresh C by living plants to soil microbes. This result supports the idea that the SOM in deep soils is stable due to the energy-limitation of microbes and the ‘inert' pool of organic C defined in current models is not so ‘inert' finally. The supply of N in soil-plant system through the use of fertilizer or legume decreased the PE suggesting that the C storage in soils is limited by nutrient supply. Similarly, plant clipping reduced the plant N uptake thereby PE. Collectively these results suggest synchronization between plant N uptake and SOM mineralization supporting the idea that soils under permanent plant cover function as a bank of nutrients for the plant, maximizing plant productivity and nutrient retention. An innovative method clearly showed that the root exudation is the major way by which grassland plants induce PE. Moreover, saprophytic fungi are suggested as the key actors in the mineralization of recalcitrant SOM & PE. Lastly, we developed a new theory on temperature response of SOM mineralization by taking into account the energy-limitation of microbes and the temperature-dependent inactivation of enzymes. This theory predicts a negative relationship between temperature and mineralization of recalcitrant SOM, which was supported by experimental results. This finding challenges the classical paradigm of positive relationship between temperature and recalcitrant SOM mineralization. Overall, these investigations on plant-soil systems reinforce the idea that PE and underlying mechanisms play a key role in ecosystem C and N dynamics and even suggest that this role was underestimated in lab experiments.

Hydrothermal carbonisation (HTC) could form the basis for rendering human faecal wastes safe whilst at the same time generating a carbon-rich material (hydrochar) and providing prospects for the recovery of energy. The work presented here has an objective of the search for optimal conditions for the HTC conversion of human faecal waste. Primary sewage sludge (PSS) and synthetic faeces (SF), of various moisture contents, were used as feedstocks to investigate the kinetics of decomposition of solids during HTC over a range of reaction times and temperatures. Decomposition was found to follow first-order kinetics, and the corresponding activation energies were obtained. Temperature was of primary importance to influence solid decomposition. Higher temperatures resulted in higher solids conversion to hydrochar. The energy contents of the hydrochars from PSS carbonised at 140 200oC for 4 h ranged from 21.5 to 23.1 MJ kg 1. Moisture content was found to affect the HTC process and feedstocks, with higher initial moisture contents resulted in lower hydrochar yields. The effect of reaction conditions on the characteristics of the hydrochar, liquid and gas products from HTC of faecal material, and the conditions leading to optimal hydrochar characteristics were investigated using a Response Surface Methodology (RSM). Models were developed here which could aid in the identification of reaction conditions to tailor such products for specific end uses. The results showed that the amount of carbon retained in hydrochars decreased as temperature and time increased, with carbon retentions of 64 77% at 140 and 160oC, and 50 62% at 180 and 200oC. Increasing temperature and reaction time increased the energy content of the hydrochar from 17 19 MJ kg 1 but reduced its energy yield from 88 to 68%. HTC at 200oC for 240 min resulted in hydrochars suitable for fuel, while carbonation at 160oC for 60 min produced hydrochars appropriate for carbon storage when applied to the soil. Theoretical estimates of methane yields resulting from subsequent anaerobic digestion (AD) of the liquid by-products are presented, with the highest yields obtained following carbonisation at 180oC for 30 min. In general, HTC at 180oC for 60 min and 200oC for 30 min resulted in hydrochars having optimal characteristics, and also for obtaining optimal methane yields. Maillard reaction products were identified in the liquid fractions following carbonisations at the higher temperatures. It was also found that the TOC, COD and BOD of the liquid products following HTC increased as the reaction temperature and time were increased and that these would require further treatment before being discharged. The results indicated that the gaseous phase following HTC contained carbon dioxide, nitrogen dioxide, nitric oxide, ammonia, and hydrogen sulphide indicating that additional treatment would be required before discharge to the atmosphere. In order to identify the optimum conditions leading to greater filterability of slurry resulted from HTC, the effects of reaction temperature and time on the filterability of PSS and SF slurries were investigated and optimised using RSM. It was shown that filterability improved as the reaction temperature and time at which the solids were carbonised was increased, with the best filtration results being achieved at the highest temperature (200°C) and longest treatment time (240 min) employed here. The specific cake resistance to filtration of the carbonised slurries was found to vary between 5.43 x 1012 and 2.05 x 1010 m kg 1 for cold filtration of PSS, 1.11 x 1012 and 3.49 x 1010 m kg 1 for cold filtration of SF, and 3.01 x 1012 and 3.86 x 1010 m kg 1 for hot filtration of SF, and decreased with increasing reaction temperature and time for carbonisation. There was no significant difference in specific resistance between cold and hot filtration of SF. The RSM models employed here were found to yield predictions that were close to the experimental results obtained, and should prove useful in designing and optimising HTC filtration systems for generating solids for a wide variety of end uses. Mass and energy balances of a semi-continuous HTC of faecal waste at 200oC and a reaction time of 30 min were conducted and based on recovering steam from the process as well energy from the solid fuel (hydrochar) and methane from digestion of the liquid by-product. The effect of the feedstock solids content and the quantity of feed on the mass and energy balances were investigated. Preheating the feed to 100oC using heat recovered from the process was found to significantly reduce the energy input to the reactor by about 59%, and decreased the heat loss from the reactor by between 50 60%. For feedstocks containing 15 25% solids (for all feed rates), energy recycled from the flashing off of steam and combustion of the hydrochar would be sufficient for preheating the feed, operating the reactor and drying the wet hydrochar without the need for any external sources of energy. Alternatively, for a feedstock containing 25% solids for all feed rates, energy recycled for the flashing off of steam and combustion of the methane provides sufficient energy to operate the entire process with an excess energy of about 19 21%, which could be used for other purposes.

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Coastal wetlands protect coastlines through efficient storage of organic carbon (OC) that decreases wetland vulnerability to sea level rise (SLR). Accelerated SLR is driving saltwater intrusion and altering vegetation communities and biogeochemical conditions in coastal wetlands with uncertain implications. We quantified changes in OC stocks and fluxes driven by 1) saltwater and phosphorous intrusion on freshwater and brackish marshes, 2) vegetation along an experimental saltmarsh to mangrove gradient, 3) saltwater intrusion and vegetation change across a marsh to mangrove ecotone, and 4) vegetation change and mangrove forest development along a marsh to mangrove ecotone. Increasing salinity in freshwater marshes decreased root biomass and soil elevation within one year. In brackish marshes, increased salinity decreased root productivity and biomass and increased root breakdown rate (k), while added salinity did not increase elevation loss. In our experimental marsh-mangrove ecotone, mangrove vegetation promoted higher organic carbon (OC) storage by increasing above and belowground biomass and reducing organic matter k. However, mangroves also increased belowground k, and decreased allochthonous marine subsidies, indicating the potential for OC storage trade-offs. In the Southeast Everglades, we identified strong interior-coastal gradients in soil stoichiometry and mangrove cover. Interior freshwater soil conditions increased k, while total soil OC stocks decreased toward the coast indicating that saltwater intrusion is driving large scale soil OC loss. In the southeast Everglades, mangrove expansion increased root biomass and root productivity, but did not mitigate the overall loss of OC stocks toward the coast. Similarly, in the southwest Everglades, saltwater intrusion drove a decrease in soil OC. However, mangrove encroachment drove a rapid recovery and increased OC stocks. Mangrove encroachment doubled aboveground biomass within the last ten years, increased it 30 times in the last 30 years, and doubled belowground biomass after 20 years. Our research shows that 1) moderate saltwater intrusion without mangrove encroachment will lead to a loss in OC stocks and potentially lead to wetland elevation loss and submergence, 2) in the absence of a change in saltwater intrusion, mangrove expansion can enhance OC storage 3) mangrove expansion can mitigate OC loss during saltwater intrusion, but this pattern depends on mangrove recruitment and ecosystem productivity.

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Most coastal ecosystems are dominated by marine macrophytes that deliver a range of ecologically and economically important services such as carbon and nitrogen cycling and storage, and habitat provision to a range of associated species. The relative contribution of these services among different vegetated habitats, however, and their alteration due to anthropogenic stressors is little known. In this thesis, I first examined the within and between ecosystem structure and services of eelgrass (Zostera marina) and rockweed (Ascophyllum nodosum) beds in Atlantic Canada. Both habitats significantly enhanced the overall abundance and diversity of associated species, whereas differences in the spe-cies assemblages were attributed to differences in canopy structure within and between habitats. Changes in the canopy structure of the foundation species will affect associated food webs and ecosystem services. Next, I used large-scale field surveys to examine the effects of eutrophication on the structure and services of eelgrass beds. As eutrophication increased, plant dominance shifted from eelgrass to macroalgae and phytoplankton at a regional scale. The faunal community showed increases in filter feeders, detritivores and some herbivores, while sensitive species declined. These faunal changes can be linked to enhanced food availability and predation refuge offered by increased phytoplankton and opportunistic macroalgae. However, the loss of eelgrass and sensitive species highlight the negative consequences of eutrophication on eelgrass ecosystems and the services they provide. I also reviewed the global carbon and nitrogen storage and habitat services of mangroves, salt marshes, seagrass meadows and macroalgal beds. Despite only occupying 0.7% of the ocean area, together these ecosystems make up 12% of the oceanic carbon stock thereby playing an important role in global carbon and nitrogen storage. Moreover, these macrophyte habitats enhanced species richness and abundance of associated fauna and juvenile fishes. Overall, my findings indicate that each macrophyte habitat has its strengths yet all are essential in providing the full range of ecosystem services. Increasing human impacts along the coasts, however, are threatening macrophyte ecosystems worldwide, and their further decline will impair the provision of important services and human well-being. Lastly, I discuss the implications of my work for management and conservation.

[pt] Para contribuir com a mitigação das mudanças climáticas, tecnologias com o intuito de promover a redução de emissões dos Gases de Efeito Estufa, como é o caso do dióxido de carbono, tem obtido grande destaque nas pesquisas ultimamente. Uma das alternativas para impedir que todo esse carbono seja liberado para a atmosfera é reinjetar o CO2 nos próprios reservatórios ou em outras formações geológicas próximas. Neste sentido, esta dissertação apresenta uma tecnologia relacionada à captura e armazenamento geológico de CO2 e avalia o processo de injeção de dióxido de carbono em aquíferos salinos. O principal objetivo é avaliar o processo de injeção de dióxido de carbono em aquíferos salinos de rochas carbonáticas, numa escala de tempo de três mil anos, para avaliar o aprisionamento do CO2 em suas diferentes formas, incluindo o armazenamento mineral. Tal estudo também considera na modelagem, as reações químicas entre os componentes na fase aquosa e a difusão molecular do dióxido de carbono na fase aquosa, assim como as reações químicas de dissolução e precipitação mineral. A partir das informações obtidas em literatura, estabeleceu-se as premissas para a simulação do caso base, e gerou-se casos derivados variando individualmente cada uma das seguintes propriedades: difusividade, salinidade, pH e temperatura, no qual avaliou-se a contribuição de cada uma delas nas diferentes formas de armazenamento do CO2. Por fim, concluiu-se que a mineralização do CO2 iniciou-se após aproximadamente 200 anos de simulação. No entanto, devido às lentas taxas da reação de precipitação mineral, a predominância do armazenamento do CO2 ainda foi na forma dissolvida. As propriedades variadas que contribuíram para o aumento do armazenamento mineral de CO2, que é considerada a forma mais estável, foram: menor fator de difusividade, maior salinidade do aquífero, pH básico (pH igual a 8,0) e maior temperatura. / [en] In order to contribute to climatic changes mitigation, technologies aiming the reduction of pollution gases emissions, such as carbon dioxide, have been highlighted in recent researches. One of the alternatives to prevent all this carbon from being released into the atmosphere is to reinject CO2 into reservoirs or in other nearby geological formations. In this sense, this work presents a technology related to the capture and geological storage of CO2 and evaluates the carbon dioxide injection process into saline aquifers. The main objective is to evaluate the carbon dioxide injection process in saline aquifers of carbonate rocks, in a time scale of three thousand years, to evaluate the storage mechanism of CO2 in its different forms, including mineral storage. Such study also considers in the modeling, the chemical reactions between the components in the aqueous phase and the molecular diffusion of the carbon dioxide in the aqueous phase, as well as the chemical reactions of mineral dissolution and precipitation. From the research made and the information gathered in the literature, the premises for the simulation of the base case were established, and derivative cases were generated by individually varying each of the following properties: diffusivity, salinity, pH and temperature, in which the contribution of each property was evaluated on the different CO2 storage forms. Finally, it was concluded that the injected CO2 mineralization process started after approximately 200 years of simulation. However, due to slow rates of the mineral precipitation, the CO2 storage in the dissolved form was still predominant. The different properties that contributed to increase the CO2 mineral storage, which is considered the more estable one, were: lower diffusivity factor, higher aquifer salinity, basic pH (pH equal to 8.0) and higher temperature.

Although, the potential of management induced changes of soil organic matter, soil hydraulic properties (SHPs) and soil physical quality has been studied particularly in relation to tillage, few studies have evaluated combined effect of tillage, crop residue retention and cropping sequence, which are essential components of conservation agriculture (CA), on stratification and storage of soil organic matter, its effect on near-saturated soil hydraulic properties and soil physical quality in intensive cereal based irrigated cropping systems. Hence, the present study critically analyses the effects of CA on organic matter and hydro-physical properties of soil in a long-term CA field trial in NWIGP, India, which is one of the most fragile agro-ecosystems in the world. The objectives were (I) to investigate the stratification of soil organic carbon (SOC), total nitrogen (TN), C/N ratio and evaluate SR as an indicator of storage of SOC and TN and soil quality for different CA practices, (II) to assess the long-term effect of CA practices and short-term effect of crops on near-saturated soil hydraulic conductivity and water transmission properties, and (III) to assess the effect of CA practices on soil physical quality using capacitive and dynamic indicators. There were four treatments: (1) conventionally tilled rice-wheat cropping system (CT-RW), (2) reduced till CA-based rice-wheat-mungbean system (RT-RWMB), (3) no-till CA-based rice-wheat-mungbean system (NT-RWMB), and (4) no-till CA-based maize-wheat-mungbean system (NT-MWMB). To achieve these objectives, soil bulk density, SOC and TN were measured in an increment of 5 cm up to 30 cm soil depth. Furthermore, the effects of CA were also evaluated in terms of soil hydro-physical properties. Soil physical properties such as bulk density and soil aggregate distribution were evaluated in two cropping seasons along with near saturated hydraulic properties. Steady state infiltration rates were obtained at four pressure heads by hood infiltrometer consecutively over two cropping seasons, i.e. during harvest season of rice/maize (October 2017) and maximum crop growth stage of wheat (February 2018). Data were analysed in terms of soil hydraulic conductivity, k(h), flow weighted mean pore radius (r0), hydraulically active porosity (ε) and threshold pore radius (rbp), a new pore measure indicative of macropore stability derived by substituting soil’s bubble pressure in the capillary equation. Finally, the effects of CA on soil physical quality in terms of both capacitive and dynamic indicators, derived from soil moisture retention curve and field measured hydraulic conductivity, respectively, were assessed and related with crop yield to infer which indicator better represented the soil physical quality and its effect on crop yield under irrigated intensive cereal based cropping systems. Results showed that CA had profound impacts on distribution of SOC and TN in the soil profile. Significantly higher proportion of both SOC and TN were observed in the top soil in the CA-based treatments as compared with conventional intensive tillage-based treatment. The mean stratification ratio of both SOC and TN were found > 2 in CA-based treatments whereas the same was < 2 in intensive tillage-based treatment. Storage of SOC and TN in the 0-30 cm were found higher in CA-based treatments as compared with the intensive tillage-based treatment. These results on vertical distribution and storage of SOC and TN indicated a relatively better soil carbon sequestration and soil quality in CA-based treatment. The higher concentrations and storage of soil organic matter in CA-based treatments were, however, not translated into significantly (p < 0.05) lower bulk density due to probable compaction effect of no-tillage and harvest machinery and hydraulic pressure exerted by the flooded irrigation water. However, the increased soil organic matter in the top soil in CA-based treatments improved the soil aggregation significantly which helped in enhancing soil structural quality. Improvement in soil structure was reflected in relatively higher near saturated hydraulic conductivity in CA-based treatments. Irrespective of crop seasons, higher k(h) was observed under CA due to formation of macropores with better continuity, greater size and numbers as compared with conventional intensive tillage treatment. Moreover, higher r0 values were observed for a given k(h) for CA treatments suggesting that interaggregate pores are the dominant pathways of infiltration in CA. A relatively smaller temporal variation of rbp was indicative of a more stable macropore system established by rice-based CA as compared with maize-based CA. CA also enhanced hydraulically active macropores as compared with intensive tillage based conventional agriculture. Results also indicated that crops play an important role in relative distribution of the hydraulically active macropores in the root zone. The impact of CA on soil organic matter stratification and soil hydraulic properties were found to be expressed in terms of changes in soil physical quality. Soil moisture retention curves and pore size distributions under different treatments suggested higher soil water storage in structural pores in CA as compared with intensive tillage-based conventional agriculture. The impact of CA on soil physical quality and consequent effect on crop yield was found to be more expressed through dynamic indicators such as hydraulically active porosity rather than capacitive indicators derived from soil moisture retention curve. Overall, this study reveals that conservation agriculture has great potentials to reverse the intensive tillage induced degradation of soil resources in Indo-Gangetic Plains of India by improving the soil hydro-physical properties and soil physical quality.:Table of Contents Declaration i Declaration of Conformity ii Acknowledgements iii Table of Contents v List of Figures vii List of Tables xi List of Symbols, Abbreviations and Acronyms xiv Abstract xvii 1 Introduction and Background 1 1.1 General Overview 1 1.2 Statement of the Research Problem 5 1.3 Objectives 6 1.4 Research Flow and Chapter Description 7 2 Materials and Methods 9 2.1 Study Area Description 9 2.1.1 Study site 9 2.1.2 Climate 9 2.1.3 Soil 10 2.1.4 Treatments 10 2.1.5 Field Campaigns and Measurement/Analysis 14 2.2 Methods and Theoretical Considerations 14 2.2.1 Soil Sampling and Analysis 14 2.2.1.1 Calculation of Stratification Ratio 15 2.2.1.2 Calculation of SOC and TN Storage 15 2.2.1.3 Aggregate Size Distribution 16 2.2.2 Infiltration Measurements 16 2.2.3 Soil Moisture Retention Experiments 17 2.2.4 Derivation of Hydraulic Properties from Steady State Infiltration Rates 18 2.2.4.1 Near-Saturated Hydraulic Conductivity 18 2.2.4.2 Flow Weighted Mean Pore Radius 20 2.2.4.3 Equivalent Threshold pore Radius 21 2.2.4.4 Hydraulically Active Porosity 21 2.2.5 Determiation of Soil Moisture Charachtristics and Pore Size Distribution 22 2.2.6 Derivation of Soil Physical Quality Indicators 23 2.3 Statistics 25 3 Results and Discussion 26 3.1 Stratification and Storage of Soil Organic Matter 26 3.1.1 Bulk Density 26 3.1.2 Concenrations of SOC 27 3.1.3 Concentrations of TN 28 3.1.4 C/N Ratio 29 3.1.5 Stratification Ratio of SOC, TN and C/N Ratio 30 3.1.6 Storage of SOC and TN 33 3.1.7 Discussion 34 3.1.8 Summary of Results 39 3.2 Soil Hydro-Physical Properties 40 3.2.1 Soil Physical Properties 40 3.2.2 Near-Saturated Hydraulic Conductivity 43 3.2.3 Soil Pore Characteristics-Conductivity Relationship 47 3.2.4 Hydrailically active Porosity 51 3.2.5 Summary of Results 54 3.3 Soil Physical Quality (SPQ) 56 3.3.1 Soil Moisture Retention Curve (SMRC) 56 3.3.2 Soil Pore Size Distribution (SPSD) 58 3.3.3 Capacitive Indicators 59 3.3.4 Dynamic Indicators 60 3.3.5 Relationship between capacitive indicators of SPQ with dynamic indicators of SPQ and long-term crop yield 60 3.3.6 Relationship between dynamic indicator of SPQ (hydraulically active porosity) and Long-term Crop Yield 62 3.3.7 Summary of Results 64 4 Synthesis and Conclusions 65 5 Implications and Outlook 69 References 71

Since the 1980s, hemlock-dominated forests (Tsuga canadensis) of central New England have been increasingly infested by the invasive pest hemlock woolly adelgid (HWA, Adelges tsugae), predominantly resulting in its replacement by black birch-dominated forests (Betula lenta). To date there has been no long-term empirical analysis of HWA effects on forest carbon (C) cycling due to forest transition from hemlock to black birch. To address this question, I measured the C pools in five stand types at varying ages and stages of HWA infestation in Massachusetts and Connecticut. I also measured C fluxes in aboveground net primary production (ANPP) and soil respiration, and studied the drivers of these fluxes viz. litter production, rates of foliar decomposition, soil exoenzyme activity, temperature sensitivity of soil respiration and nitrogen (N) cycling. The mass of C stored in recovering forests was resilient to HWA infestation but the location of these stocks varied among stand types. There was a transition of C from live biomass in healthy, unaffected secondary hemlock forests to coarse woody debris (CWD) in recently girdled forests intended to simulate the effect of HWA on hemlock loss. Twenty years post-HWA infestation, however, ANPP was very high and there was a large increase in biomass-C pools in aggrading black stand types. C pools in mature, secondary black birch stand types ~135 years since pastureland abandonment were as large as those in primary hemlock stand types ~235 years of age, suggesting recovery of C storage within one century of HWA infestation. Soil respiration rates were positively correlated with inputs of hardwood leaf litter, fine root biomass and exoenzyme activity. Stand-type variations in ANPP were positively correlated with annual N requirements and N uptake from the soil. Nitrogen-use efficiency was highest in the girdled and post-HWA infestation stand types where ANPP was dominated by wood production which has a wide C:N ratio. Similar trends were found in soil respiration, but not to the same degree as that of ANPP. Collectively, my results indicate that southern New England forests C storage is highly resilient to the HWA-induced losses of hemlock, suggesting that these ecosystems will continue to be sinks for atmospheric carbon dioxide.