An investigation of surface structures formed on polycrystalline and single crystal TiO2 (titania) samples having under gone various heat treatments in a controlled hydrogen bearing atmosphere was conducted. The study included the recreation and examination of the process discovered by Sehoon Yoo at Ohio State University to form nanofibers on the surface of polycrystalline TiO2 disks. Fibers were formed by heating samples to 700??in a 5%H2 95%N2 gas stream. The nanofibers formed during this processes are approximately 5-20 nanometers in diameter and can be 100??f nanometers long. The fibers do not actually grow on the surface, but are what remain of the surface as the material around them is removed by the gas stream V i.e., nanocarving. The mechanism of fiber formation and the effect of varying experimental parameters remained unknown and were explored within this study. This included changing gas composition, flow rate, and changes in sample preparation. The effect of isovalent doping and impurities within the starting powder were examined. Sintering temperature and time was investigated to determine the effect of grain size and surface morphologies prior to nanocarving. The effect of elevated temperature and 5%H2 95%N gas on the surface of TiO2 single-crystal wafers was also investigated. Test methods include Thermogravimetric Analysis (TGA), Mass Spectrometry (MS), Scanning Electron Microscopy (SEM), and X-ray diffraction (XRD) analysis.

This dissertation describes the use of spherical micro- and nanoparticles as building blocks for the fabrication of colloidal crystals. The polymer component used in all of the projects that are described herein is poly-N-isopropylacrylamide (pNIPAm). The polymeric identity of particles composed of this soft, hydrogel material, which is also thermoresponsive, contributes to particle self-assembly to form ordered structures. Specifically, particles that possess a core/shell topology were investigated to allow for the localization of distinct polymeric properties. Chapter 2 examines a characterization technique using fluorescence resonance energy transfer (FRET) that was explored to investigate the structure of pNIPAm particles that possess this core/shell topology. Chapters 4-6 investigate strategies to impart both stability and flexibility to the particles so that these properties could assist in particle self-assembly as well as provide a stable construct for the production of robust crystalline materials. Styrene was used as the main monomer component in a copolymer synthesis with NIPAm to achieve poly(styrene-co-N-isopropylacrylamide particles (pS-co-NIPAm) that exhibited both hard and soft properties. Simple drying procedures were used to form crystal assemblies with these particles and the application of these pS-co-NIPAm particle suspensions as processable, photonic inks is also investigated. Chapter 7 examines the ability to physically cross-link colloidal crystals composed of pS-co-NIPAm particles by simple heating methods to produce robust films. The optical properties of these crystal films could be tuned by simple rehydration of the film due to the hydrogel character of the crystal building blocks. Chapters 3 and 5 examine the synthesis and self-assembly strategies of core/shell particles using the properties of pNIPAm shell layers that have been added to different types of core particles (silver or pS-co-NIPAm) for the purposes of fabricating colloidal crystals with enhanced properties using thermal annealing procedures. Chapter 8 explores the use of silver particles as tracers for the characterization of colloidal crystals composed of thermally annealed colloidal crystals composed of pNIPAm hydrogel particles.

Nitrochemicals are currently widely used as solvents, drugs, biocides, fuels and explosives and are consequently widely distributed in the environment. The reductive nitrite elimination from explosive compounds is catalyzed by two FMN-dependent, xenobiotic reductases (XenA or XenB). These genes for these regiospecific enzymes were cloned from Pseudomonas putida and P. fluorescens I-C respectively and isolated from the soil of a contaminated World War II munitions manufacturing plant. These enzymes enable the microbes to fulfill their nitrogen requirements from nitroglycerin by catalyzing the regiospecific, NADPH dependent, reductive denitration of nitroglycerin with differing selectivities. The two enzymes also transform a number of additional nitrocompounds in vitro, e.g. TNT and metronidazole, a leading drug in the treatment of Helicobacter pylori, a causative agent of human ulcers. Single crystals were obtained for XenA and XenB and complete X-ray diffraction datasets have been collected and analyzed to better understand these characteristics. The 1.6 Å resolution structure of XenA reveals a dimer of β/α)₈-TIM barrels, but the 2.3 Å resolution structure for XenB is a monomer. The (β/α)₈-TIM barrel protein fold is the most common fold in the PDB. However, the XenA structure exhibits a unique, C-terminal domain-swapped topology. Thus a portion of each active site is comprised of residues from the neighboring monomer. To probe the reaction cycle, crystal structures of ligand complexes and the reduced enzyme have been refined. For example, our structure of the XenA-metronidazole complex shows that ligands bind parallel to the FMN si-face. Our 1.5 Å resolution structure for reduced XenA reveals an FMN isoalloxazine ring with an angle of ~165° along the N5-N10 axis. We have also generated models of the reduced enzyme-nitroglycerin complexes by molecular dynamics. The results with both XenA and XenB reveal differences in enzyme-ligand hydrogen bonding. These differences correlate remarkably well with the regiospecific differences observed for nitrite elimination from nitroglycerin and reduction of TNT by the two enzymes.

Diquinoline molecules have been shown previously to have interesting inclusion properties. Of the nine new, targeted molecules produced for this work, seven formed inclusion compounds, and their solid-state structures are discussed herein. Chapter 2 shows the effect that substituting a hydrogen atom with a chlorine atom has on the inclusion properties. This comes about because of the additional intermolecular attractions that are now possible, and a wider range of guest molecules is included as a result. A new homochiral aromatic 'swivel offset face-face (OFF)' interaction is observed. Chapters 3 and 4 deal with the effect of adding extra aromatic planes to the target molecules, two or four planes, respectively. Each of these host molecules formed dimeric host-host units that are extremely similar across all crystal structures. These dimers mainly employed aromatic edgeface (EF) interactions. Chapter 5 looks at the effect of combining the modifications described in Chapters 2-4, namely additional aromatic surfaces and atom substitution. The resulting host molecule specifically includes polyhalomethane guests. In addition, this host molecule formed two concomitant pseudo-dimorph compounds with chloroform-d. The diquinoline host molecule presented in Chapter 6 incorporated an isomeric central linker ring to the other compounds. Although only a single crystal structure could be obtained, 1H NMR spectroscopy experiments show other small aromatics may be included. The effect of electron donating chemical substituents was examined in Chapter 7. These compounds were found to be quite insoluble, and did not produce crystals suitable for X-ray analysis. The host molecules in Chapter 8 contain electron withdrawing nitro groups. The two isomeric compounds that act as inclusion hosts show quite different properties. One of these hosts forms a series of inclusion compounds with water, in which the site occupancy of the guest can range from 0-100% without change to the overall structure. All the X-ray structures described have been analysed in crystal engineering terms, and their supramolecular interactions described in detail.

Solubility prediction usually refers to prediction of the intrinsic aqueous solubility, which is the concentration of an unionised molecule in a saturated aqueous solution at thermodynamic equilibrium at a given temperature. Solubility is determined by structural and energetic components emanating from solid-phase structure and packing interactions, solute–solvent interactions, and structural reorganisation in solution. An overview of the most commonly used methods for solubility prediction is given in Chapter 1. In this thesis, we investigate various approaches to solubility prediction and solvation model development, based on informatics and incorporation of empirical and experimental data. These are of a knowledge-based nature, and specifically incorporate information from the Cambridge Structural Database (CSD). A common problem for solubility prediction is the computational cost associated with accurate models. This issue is usually addressed by use of machine learning and regression models, such as the General Solubility Equation (GSE). These types of models are investigated and discussed in Chapter 3, where we evaluate the reliability of the GSE for a set of structures covering a large area of chemical space. We find that molecular descriptors relating to specific atom or functional group counts in the solute molecule almost always appear in improved regression models. In accordance with the findings of Chapter 3, in Chapter 4 we investigate whether radial distribution functions (RDFs) calculated for atoms (defined according to their immediate chemical environment) with water from organic hydrate crystal structures may give a good indication of interactions applicable to the solution phase, and justify this by comparison of our own RDFs to neutron diffraction data for water and ice. We then apply our RDFs to the theory of the Reference Interaction Site Model (RISM) in Chapter 5, and produce novel models for the calculation of Hydration Free Energies (HFEs).