Tuberculosis is a disease that kills more people every year than any other infectious disease and is caused by the human pathogen, Mycobacterium tuberculosis (Mtb). This disease can be treated by a standard six month course of four antimicrobial drugs that have been in use since the 1960s. However, the rise of multi-drug resistant and extensively drug-resistant strains of TB has complicated the efforts to eradicate the disease. Therefore, there is a critical need for the development of new anti-TB drugs with a novel mechanism of action that can speed up treatment duration and help avoid resistance. The discovery of twenty genes encoding cytochrome P450 enzymes in the Mtb H37Rv genome sequence has pointed to the significance of these enzymes in the physiology and pathogenicity of this bacterium. Consequently, the characterisation of these Mtb P450 enzymes may define their physiological roles of which can be a novel anti-tubercular drug target. To date, the characterisations of selected Mtb P450 enzymes have highlighted their diverse and unexpected roles in the metabolism of cholesterol and lipids and the production of secondary metabolites. Biochemical and biophysical studies of these enzymes provided knowledge of their active site properties that may be exploited for drug discovery. Therefore, with the prospect of defining novel functions and identifying novel drug targets, characterisations of the remaining orphan Mtb P450s is of interest. M. tuberculosis CYP141A1 and CYP143A1 are orphan enzymes with unknown physiological function in Mtb which is characterised in this study through use of various spectroscopic and biophysical techniques. Interestingly, CYP141A1 can be expressed in form of which 54 amino acids (Del54CYP141A1) are deleted from the N-terminus. Although Del54CYP141A1 still retain spectroscopic characteristics, this form of P450 cannot be crystallized. Optimisation of full-length CYP141A1 buffer composition resulted to the formation of reproducible crystals and determination of CYP141A1 structure. Spectroscopic and structural characterisations presented in this thesis revealed many characteristics of CYP141A1 and CYP143A1 are comparable to previous Mtb P450s reported to date. CYP141A1 and CYP143A1 active site consist of b-type heme iron ligated by cysteine residue and a water molecule at its proximal and distal face, respectively. Both enzymes bind tightly to azole antifungal drugs highlighting their potential as a drug target. In addition, fragment-based screening applied to CYP141A1 and CYP143A1 provided the starting point for the development of potent, isoform-specific inhibitors for both orphan Mtb P450 enzymes. The first crystal structure of CYP141A1 and identification of new fragment binders of CYP141A1 and CYP143A1 are presented in this thesis. Overall, this research remains significant in providing new knowledge on the spectroscopic and structural properties of the M. tuberculosis P450s CYP141A1 and CYP143A1.

Human drug metabolites are frequently biologically active, with many implications for human health. Pharmaceutical companies have become increasingly aware of the need to identify and test these metabolites. The P450 BM3 enzyme from Bacillus megaterium offers substantial advantages to the current methods of metabolite synthesis, as its soluble, catalytically self-sufficient nature, coupled with its high catalytic activity, make P450 BM3 ideal for engineering towards specificity for human drugs. The highly-active I401P BM3 mutant was characterized for its reactivity towards human drugs and for the development of a human P450-like metabolite profile. The I401P mutant exhibits binding to molecules including alkaloids, steroids, and azole drugs, along with many other compounds. I401P binds/oxidizes human CYP substrates, including alosetron, phenacetin, caffeine, nicotine and diclofenac. LC-MS product identification shows that I401P BM3 forms 4OH-diclofenac, the major human metabolite for diclofenac. I401P BM3 also produces nornicotine, the second major human metabolite of nicotine. I401P BM3 also forms theophylline, theobromine and paraxanthine, the three major human metabolites of caffeine. Thermostability (DSC) data show that the I401P mutation destabilizes the BM3 heme domain in both its substrate-free and substrate-bound forms. The I401P heme domain X-ray crystal structure reinforces previous structural observations that the Pro401 mutation causes the BM3 protein to adopt a high-spin, "substrate-bound" state, with a displaced heme iron axial water, producing a "catalytically primed" mutant with greater diversity in substrate selectivity. The destabilisation of the BM3 heme domain structure due to the Pro401 mutation increases conformational plasticity in this mutant, allowing it to function as a platform for future mutagenesis aimed at improved binding and metabolite yield from specific drug substrates. Further proline mutations (A330P, A330P/I401P and A82F/F87V/I401P) were examined for increased affinity for drug substrates. The A330P mutant shows no novel drug substrate specificity, despite its reported affinity for small molecules. The A330P/I401P double mutant demonstrates weak binding to WT BM3 and I401P substrates, but no synergistic effects were obtained by combining the two mutations. The double mutant exhibits very low solvent tolerance and significant structural destabilisation. DSC data confirms this, with the double mutant destabilising the BM3 heme domain by up to 20 °C. Initial work with the A82F/F87V/I401P mutant showed increased affinity for A82F/F87V- and I401P-type substrates, including diclofenac. LC-MS product analysis confirms that the A82F/F87V/I401P mutant oxidises diclofenac into its major human metabolite 4OH-diclofenac. These data indicate that human-like oxidation reactions are feasible with BM3 mutants. In this work, proline insertion mutants were generated that introduced novel affinity for biotechnologically relevant substrates. In particular the I401P mutant offers an excellent platform for future biotechnological engineering.

Orientador: João Aristeu da Rosa / Banca: João Aristeu da Rosa / Banca: Eunice Aparecida Bianchi Galati / Banca:Maria Tercilia Vilela de azeredo Oliveira / Resumo: A doença de Chagas tem como agente etiológico o protozoário Trypanosoma cruzi, cujos vetores pertencem à subfamília Triatominae. Os triatomíneos distribuem-se distribuídos por toda região Neotropical e epidemiologicamente se destacam as espécies dos gêneros Panstrongylus, Rhodnius e Triatoma. O gênero Triatoma é o mais numeroso e foi subdividido em complexos específicos de acordo com semelhanças morfológicas e distribuição geográfica de suas espécies. As sete espécies estudadas podem ser encontradas na região Centro-Oeste do Brasil, das quais seis pertencem ao subcomplexo matogrossensis (T. baratai, T. costalimai, T. guazu, T. matogrossensis, T. vandae e T. williami). A outra espécie, T. sordida pertence ao subcomplexo sordida. O objetivo deste estudo foi determinar a posição filogenética das sete espécies ocorrentes na região Centro-Oeste, por meio de comparação das sequências dos fragmentos citocromo b e 16S do DNA mitocondrial, visto que até o momento não foi determinada a posição de T. baratai e T. vandae com base em dados moleculares. Os exemplares avaliados são oriundos de colônias mantidas junto ao Insetário de Triatominae da Faculdade de Ciências Farmacêuticas/UNESP - Araraquara. Após a extração do DNA genômico e da amplificação dos fragmentos 16S e Cytb, procedeu-se o sequenciamento do DNA em sqüenciador automático, modelo ABI 377. As sequências obtidas juntamente com outras sequências (do mesmo fragmento) já disponíveis no GenBank, foram alinhadas com auxílio do programa Clustal W do BioEdit e as inferências filogenéticas foram conduzidas utilizando-se análises de parcimônia e de distância com o programa MEGA 3.1. De acordo com os resultados encontrados, T. costalimai mostrou-se mais distante das demais espécies e foi posicionada como grupo externo. As outras espécies distribuíram-se em dois grupos:.. (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: The protozoan Trypanosoma cruzi, the etiologic agent of Chagas' disease, is transmitted by vectors that belong to the subfamily Triatominae. The triatomines are distributed throughout the Neotropical region and species from Panstrongylus, Rhodnius and Triatoma genus stand out epidemiologically. The Triatoma genus is the largest and was divided in specific complexes according to morphological similarities and geographical distribution of its species. The seven species studied can be found in the Central West Region of Brazil, of which six belong to the matogrossensis subcomplex (T. baratai, T. costalimai, T. guazu, T. jurbergi, T. matogrossensis, T. vandae and T. williami). The other specie, T. sordida belong sordida subcomplex. The aim of this study was to determine the phylogenetic position of the seven species from Central West Region by comparing the 16S and Cytb fragments sequences of the mitochondrial DNA, since so far not been given the position of T. baratai and T. vandae based DNA sequences. The specimens evaluated came from colonies maintained at the Insectarium of Triatominae, Faculdade de Ciências Farmacêuticas / UNESP - Araraquara. After extraction of genomic DNA and amplification of the 16S and Cytb fragments, it was sequenced in an automatic DNA sequencer, model ABI 377. The sequences obtained and other sequences (of the same fragment) already available in GenBank were aligned using the Clustal W program of BioEdit and the phylogenetic inferences were conducted using the analysis of parsimony and distance with the MEGA 3.1 program. According to the results, T. costalimai was more distant from other species and was placed as an outside group. Other species are distributed in two groups, the first comprising the species T. vandae very close to T. matogrossensis and external of these, T. sordida. The second group includes T. guazu strongly related to T. williami... (Complete abstract click electronic access below) / Mestre

CoordenaÃÃo de AperfeiÃoamento de Pessoal de NÃvel Superior / O emprego das tÃcnicas de eletroquÃmica, microbalanÃa de cristal quartzo (QCM â Quartz Crystal Microbalance) e ressonÃncia de plÃsmons de superfÃcie (SPR â Surface Plasmon Resonance) mostram que as espÃcies 1,4-ditiano (1,4-dt), 4-mercaptopiridina (pyS), 5-(4-piridil)-1,3,4-oxadiazol-2-tiol (Hpyt), tionicotinamida (TNA) e isotionicotinamida (iTNA) experimentam adsorÃÃo espontÃnea formando SAMs (Self-Assembled Monolayers) como resultado da imersÃo de substratos de ouro em soluÃÃo contendo estas espÃcies. As imagens obtidas por microscopia de varredura por tunelamento (STM â Scanning Tunneling Microscopy) indicam um arranjo prÃximo do hexagonal com exceÃÃo da iTNA cujas imagens nÃo foram conclusivas. Adicionalmente, as imagens indicam a existÃncia de defeitos nas SAMs mesmo apÃs longos perÃodos de imersÃo (24 h). Os estudos termodinÃmicos e cinÃticos dos processos de adsorÃÃo foram realizados por desorÃÃo redutiva em meio alcalino e QCM. Os valores dos potenciais de desorÃÃo redutiva, Edr, foram observados em −0,9, −0,8 e −0,5 V vs. Ag/AgCl/Cl- para a desorÃÃo de iTNA, TNA e Hpyt, respectivamente. Comparativamente Ãs espÃcies 1,4-dt (−0,8 V) e pyS (−0,5 V), o valor de Edr da SAM de Hpyt indica uma interaÃÃo sigma ao passo que aqueles observados para iTNA e TNA sugerem uma contribuiÃÃo pi adicional. Os valores de quantidade de material adsorvido (gama) e da taxa de recobrimento da superfÃcie (teta), calculados por desorÃÃo redutiva e impedÃncia eletroquÃmica, respectivamente, foram consistentes com as imagens de STM. Comparativamente aos resultados de desorÃÃo, os maiores valores de gama determinados por QCM foram atribuÃdos à presenÃa de molÃculas de Ãgua co-adsorvidas visto que foi observada uma relaÃÃo linear entre o excesso de massa e o momento de dipolo das espÃcies modificadoras. As curvas de desorÃÃo obtidas para pyS indicam a decomposiÃÃo da monocamada nÃo possibilitando, portanto, a determinaÃÃo dos parÃmetros termodinÃmicos e cinÃticos de adsorÃÃo. A correlaÃÃo com os resultados obtidos apÃs imersÃo do eletrodo de ouro em soluÃÃo de Na2S sugere que este processo està associado à quebra da ligaÃÃo C─S com formaÃÃo de uma camada de enxofre atÃmico e/ou oligomÃrico. As isotermas de adsorÃÃo obtidas para os processos de formaÃÃo das SAMs de Hpyt, TNA e iTNA, adequaram-se ao modelo de Langmuir permitindo a determinaÃÃo da variaÃÃo da energia livre de adsorÃÃo, ΔGads, como −35,9, −38,5 e −34,9 kJ mol−1, respectivamente. Estes valores sÃo indicativos de interaÃÃo forte sendo caracterÃsticos de processos de quimissorÃÃo. Para o modelo de Frumkin, os dados apresentaram melhores correlaÃÃes quando o parÃmetro de interaÃÃo (g) foi fixado em −0,45, −0,30 e −0,10, respectivamente, para as SAMs de Hpyt, TNA e iTNA indicando interaÃÃes repulsivas entre as molÃculas adjacentes. Os valores de pKa das SAMs de Hpyt (4,2), TNA (5,0 e 8,5) e iTNA (4,5 e 7,9) foi determinado por voltametria utilizando-se o Ãon complexo [Fe(CN)6]3−. Neste estudo, foram sugeridas modificaÃÃes, uma vez que o mÃtodo proposto na literatura dificulta a determinaÃÃo de mais de um valor de pKa como observado para as molÃculas de TNA e iTNA. As reaÃÃes de transferÃncia de elÃtrons (TE) das metaloproteÃnas citocromo c (cyt c) e mioglobina (Mb) foram estudadas utilizando-se as SAMs de Hpyt, TNA, iTNA, pyS e 1,4-dt. Para as SAMs de TNA e iTNA, o deslocamento positivo de 0,2V no valor do potencial de meia-onda do cyt c (pH~7,0) em relaÃÃo a forma nativa, foi atribuÃdo à densidade de carga positiva resultante da protonaÃÃo do grupo NH2 (pKa ~ 8,0). Resultados de QCM e SPR indicaram que hà a formaÃÃo de uma monocamada de cyt c sobre as SAMs estudadas. Esta monocamada, embora nÃo sendo redox ativa, permite o estudo da reaÃÃo de TE das molÃculas de cyt c em soluÃÃo sugerindo que este processo pode envolver os orbitais das molÃculas modificadoras. Para a metaloproteÃna Mb, utilizou-se uma SAM formada pelo aminoÃcido L-cisteÃna (cys), uma vez que nenhuma das SAMs estudadas acessou a reaÃÃo de TE. O processo redox foi observado em 0,086 V o que sugere a forma nativa. Os dados de QCM e SPR indicaram, tambÃm, a formaÃÃo de uma monocamada sobre a SAM de cys (Au/cys/Mb). Valores de â49,67 kJ mol−1 e −0,15 para ΔGads e g, respectivamente, foram calculados para a formaÃÃo da monocamada de Mb sobre a SAM de cys. O eletrodo Au/cys/Mb apresentou atividade catalÃtica em relaÃÃo a reaÃÃo de oxidaÃÃo do Ãcido ascÃrbico com uma diminuiÃÃo de 400 mV no sobrepotencial e uma reaÃÃo cineticamente controlada com uma constante de velocidade, kf, de ~2,0 x 10^4 L mol-1 s-1. / Electrochemical techniques, quartz crystal microbalance (QCM) and surface plÃsmons resonance (SPR) were used to study the formation of self-assembled monolayers (SAMs) of 1,4-ditiano (1,4-dt), 4-mercaptopyridine (pyS), 5-(4-piridinyl)-1,3,4-oxadiazole-2-thiol (Hpyt), thionicotinamide (TNA) and thioisonicotinamide (iTNA) as a result of the immersion of gold substrates into the respective solutions. STM (Scanning Tunneling Microscopy) images indicate the sulfur atom as the adsorption site of these molecules and a hexagonal conformation on surface. For the iTNA molecule, the images were not conclusive. In addition, the images indicated the existence of defects even after longer immersion times (24 h). Thermodynamic and kinetic aspects of the adsorption process were evaluated by reductive desorption in alkaline media and QCM. The reductive desorption potentials, Edr, were observed at −0.9, −0.8, and −0.5 V vs. Ag/AgCl for the desorption of iTNA, TNA and Hpyt, respectively. In comparison to 1,4-dt (−0.8 V) and pyS (−0.5 V) species, the Edr value of Hpyt indicates a sigma interaction whereas those of iTNA and TNA indicate an additional pi contribution. The values of the concentration of adsorbed material, gama, and fractional coverage (teta ~ 0.9), determined, respectively, by reductive desorption and impedance are consistent with the STM images. In comparison to the desorption data, the higher values of gama calculated by QCM were assigned to the presence of water molecules since a linear relation was observed between the dipole moment and the mass change calculated by QCM. The desorption curves acquired for the pyS SAM indicated the decomposition of the monolayer thus not allowing the determination of the thermodynamic and kinetic parameters of adsorption. In comparison with the results obtained for the electrode modified after immersion in Na2S solution, it was suggested that this process is associated to the cleavage of the C─S bond which results in the formation of an adlayer composed of atomic and/or oligomeric sulfur species. The adsorption isotherms for Hpyt, TNA and iTNA fitted the Langmuir model of adsorption allowing the determination of the free energy of adsorption, ΔGads, as −35.9, −38.5 and −34,9 kJ/mol, respectively. These values are indicative of strong interaction being typical of chemisorption. For the Frumkin model, the best correlation was found when the interaction parameter, g, was established as −0.45, −0.20 and −0.10 for Hpyt, TNA and iTNA, respectively, indicating repulsive interactions between the adjacent molecules. Cyclic voltammetry was used to determinate the pKa of the SAMs of Hpyt (4.2), TNA (5.0 and 8.5) and iTNA (4.5 and 7.9) by using [Fe(CN)6]3− as a probe molecule. For this study, some changes were suggested since in the method proposed in the literature the existence of more than one protonation site was not considered thus not allowing the determination of more than one pKa value as was observed for TNA and iTNA molecules. Electron transfer reactions (TE) of cytochrome c (cyt c) and myoglobin (Mb) metalloproteins were studied by using the SAMs of Hpyt, TNA, iTNA, pyS and 1,4-dt. For the SAMs formed with TNA and iTNA, the positive shift of 0.2V on the half-wave potential of cyt c in relation to that of the native protein, was assigned to the positive charge density on surface in consequence of the protonation of NH2 groups (pKa~8.0) since these measurements were carried out in physiological medium. QCM and SPR data indicated the formation of a monolayer of cyt c on the studied SAMs. This monolayer, although not being electroactive, allows the study of the TE reaction of the cyt c molecules in solution suggesting that this process involves the orbitals of the modifier molecules. For the Mb metalloprotein, a SAM of L-cysteine amino acid was used since none of the studied sulfur molecules was able to access the TE reaction. The redox process was observed at 0.086 V suggesting the native form of Mb. QCM and SPR data indicated, also, the formation of a monolayer of Mb on the cys SAM (Au/cys/Mb). Values of â49.67 kJ mol−1 and −0.15 for ΔGads and g, respectively, were calculated for the formation of the monolayer of Mb on the cys SAM. The electrode Au/cys/Mb presented catalytic activity toward the oxidation reaction of ascorbic acid presenting a decrease of 400 mV in the overpotential and a kinetic controlled with a rate constant, kf, of 2.0 x 104 L mol-1 s-1.

Pre-systemic elimination by local enzymatic degradation can play a key role in limiting the bioavailability of intranasally administered drugs. Despite remarkable advancement in the characterization of the nasal biotransformative enzymes, knowledge of the role of the nasal mucosa in limiting bioavailability of therapeutic agents is still inadequate. The aim of this work was to evaluate the expression and substrate biotransformation activity of cytochrome P450 enzymes in the nasal mucosa using bovine olfactory and respiratory explants as in vitro models. Gene expression and localization of major CYP450 isoforms in the nasal mucosa were examined using RT-PCR and immunohistochemistry. The bovine nasal mucosa showed abundant expression of CYP2A6 and 3A4 genes whereas 1A1, 1A2, 2C9, and 2C19 isoforms were expressed at much lower levels. The CYP450 proteins were observed to be present in the epithelial layer and in submucosal glandular cells. The diffusion of melatonin, a CYP1A2 substrate, and the appearance of 6-hydroxymelatonin, its primary metabolite, across bovine olfactory and respiratory explants was measured, and nasal olfactory and respiratory microsomal preparations were used to quantify the kinetic parameters for melatonin 6-hydroxylation. Results indicated that bovine olfactory and respiratory CYP450 isoforms were metabolically active towards melatonin metabolism, and the respiratory mucosa demonstrated the greatest melatonin 6-hydroxylation activity. Numerical simulations were used to probe the effects of the relative magnitudes of the permeability coefficient and enzymatic parameters on net substrate mass transfer across nasal mucosal tissues. The simulations indicated that the concentration gradient of the drug coupled with its permeability coefficient were the most significant factors controlling the transport of drugs across the mucosal tissue. Enzymatic degradation decreased the flux of drugs across the mucosa and had the greatest impact on low permeability compounds. The results from these studies show that the bovine nasal mucosa possesses significant metabolic activity, and the flux of a metabolically labile substrate across the nasal mucosa can be significantly reduced by its enzymatic degradation within the tissue. Use of kinetic modeling to characterize of the extent of biotransformation in the nasal mucosa enables the identification of metabolism-limited bioavailability of intranasally administered drug compounds.

Birds are potentially vulnerable to the toxicity of certain environmental pollutants due to limited detoxification capabilities of their liver microsomal cytochrome P450 (CYP) enzymes. In wild birds, ethoxyresorufin O-deethylation (EROD) activity, a marker of CYP1A activity in mammals and domestic chickens, has been used as a biomarker of exposure to polychlorinated biphenyls (PCBs), dibenzo-p-dioxins (PCDDs) and dibenzofurans (PCDFs). The aim of the present study was to investigate hepatic CYP activity as an indication of detoxification capacity in New Zealand birds. In addition to the use of conventional in vitro CYP activity assays, the applicability of a noninvasive CYP activity assay was tested using caffeine as the in vivo substrate. The ontogeny of liver microsomal 3-hydroxylation of quinine, a marker of human CYP3A activity, was investigated in Adelie penguins (Pygoscelis adeliae) from Ross Island, Antarctica. The results indicate that chicks (2-4 weeks old) possess a CYP3A-like isoform(s) as active as but not identical to the CYP3A-like isoform(s) in adults. Total CYP content was low at 2 weeks of age and increased rapidly and linearly approaching adult levels by 4 weeks of age implying a rapid development of CYPs other than the CYP3A-like isoform(s). The main study was conducted on adult (and some post-fledging immature) birds of two native species, the herbivorous paradise shelduck (Tadorna variegata) and the omnivorous southern black-backed gull (Larus dominicanus). Birds were shot for liver collection at three sites in the South Island of New Zealand; West Coast, Lake Waipori and Dunedin landfill, in 2001-2002. The results indicate that shelducks posssess multiple CYP isoforms that independently catalyse EROD, p-nitrophenol hydroxylation (p-NP) and erythromycin demethylation (EMD), markers of mammalian CYP1A, CYP2E and CYP3A activity, respectively. In contrast, gulls appear to possess a single isoform catalysing both EROD and p-NP but possess no isoform capable of catalysing EMD. EROD activity was high in shelducks and gulls from the landfill site, although it was not significantly associated with liver concentrations of PCBs (0.079-6.2 and 8.2-310 ng/g in shelducks and gulls, respectively), PCDD/PCDFs, toxic equivalents (TEQs) and dichlorodiphenyldichloroethylene (DDE) (0.85-317 and 44-4800 ng/g in shelducks and gulls, respectively) in either species. In shelduck livers from the landfill site, EROD was positively associated with Pb concentration but negatively associated with Hg concentration. Assessment of PCB congener patterns based on concentration ratios of individual congeners to the reference congener, 2,2�,4,4�,5,5�-hexachlorobiphenyl (IUPAC #153), indicate that the metabolism of 2,4,4�-trichlorobiphenyl (PCB#28) and 2,4,4�,5-tetrachlorobiphenyl (PCB#74) is inducible in shelducks but not in gulls. Hepatic reduced glutathione (GSH) content was higher in gulls than in shelducks suggesting greater resistance to oxidative stress in gulls. The in vivo caffeine metabolism test as a noninvasive method to determine CYP1A activity in shelducks and gulls gave a positive outcome. The test was performed by administration of a single intraperitoneal dose of caffeine (1 mg/kg body weight) followed by blood collection at 2 and 4 h after caffeine administration for determination of the serum concentration ratio of the metabolite, paraxanthine, to caffeine (PX/CA) by HPLC. In both species, the PX/CA ratio was markedly increased by pretreatment with the model CYP1A inducer, β-naphthoflavone (BNF). BNF treatment also increased EROD activity determined after death (80-fold and 20-fold compared to controls in shelducks and gulls, respectively). However, sensitivity of the PX/CA ratio approach was lower in gulls than in shelducks due presumably to the formation of unidentified caffeine metabolites in gulls. Immunoblot analysis failed to reveal increased CYP protein levels caused by BNF treatment in shelducks and gulls due to poor cross-reactivity of avian proteins with polyclonal antibodies raised against mammalian CYPs. EROD activity was also determined in livers of the piscivorous yellow-eyed penguin (Megadyptes antipodes) (1 chick, 3 post-fledging immature, 1 adult) from Otago, South Island of New Zealand, and found to be below the limit of quantitation. The adult liver contained 18.5 ng/g of total PCBs suggesting that EROD in this species is insensitive to induction. Comparison of the PCB congener pattern based on [PCBx]/[PCB#153] between the penguin and its putative source of PCB exposure, New Zealand marine fish, indicates that CYPs in yellow-eyed penguins metabolise 2,2�,5,5�-tetrachlorobiphenyl (PCB#52) and 2,2�,4,5,5�-pentachlorobiphenyl (PCB#101) as in many other avian species. The findings of this study highlight substantial species differences in CYP activity in wild birds. Whether CYP expression in New Zealand birds is genetically distinct from birds in other parts of the world may warrant further investigation.

<p>In silico ligand docking is a versatile and common technique when predicting ligands and inhibitors for protein binding sites. The various docking programmes aim to calculate binding energies and to predict interactions, thus identifying potential ligands.The currently available programmes lack satisfying means by which to account for structural water molecules which can either mediate protein-ligand contacts or be displaced upon ligand binding. The present project aims to generate data to facilitate the global work of developing scoring functions in docking programmes to account for structural water molecules contribution to ligand binding to fill the said void. This is done by validating the performance of docking using a simple model system (cytochrome C peroxidase (CCP) W191G) containing four well ordered, deeply buried structural water molecules which are known to either interact with a ligand or to be displaced upon ligand binding.Known ligands were docked into eight (crystallographically determined) receptor set-ups comprising the receptor and no, one or two of the water molecules. The performance was validated by comparison of the binding modes of the docked ligands and the crystal structures, comparison of docking scores of the ligands in the different set-ups, enrichment of the ligands from a database of decoys and finally by predicting new ligands from the decoy database. In addition a high resolution crystal structure of CCP W191G in complex with 3-aminopyridine (3AP) was determined in order to resolve ambiguities in the binding mode of this ligand.</p>

Copper is an essential cofactor of two mitochondrial enzymes: cytochrome c oxidase (COX) and the mitochondrial localized fraction of Cu-Zn superoxide dismutase (Sod1p). Copper incorporation into these enzymes is facilitated by a growing number of metallochaperone proteins. Here we describe two novel copper chaperones of COX, Cmc1 and Cmc2. In Saccharomyces cerevisiae, both Cmc1 and Cmc2 localize to the mitochondrial inner membrane facing the intermembrane space. Cmc1 and Cmc2 are essential for full expression of COX and cellular respiration, contain a twin Cx9C domain, and are conserved from yeast to humans. Additionally, the presence or absence of these proteins not only determines full assembly of functional COX but also affects metallation of Sod1 suggesting these proteins might play a role on co-modulation of copper transfer to COX and Sod1. CMC1 overexpression does not rescue the respiratory defect of cmc2 mutants or vise versa. However, Cmc2 physically interacts with Cmc1 and the absence of Cmc2 induces a 5-fold increase in Cmc1 accumulation in the mitochondrial membranes. We conclude that Cmc1 and Cmc2 have cooperative but non-overlapping functions in cytochrome c oxidase biogenesis.

Thesis (Ph. D.)--West Virginia University, 2006. / Title from document title page. Document formatted into pages; contains xiv, 139 p. : ill. (some col.). Includes abstract. Includes bibliographical references (p. 129-138).

Bats of the genus Scotophilus are distributed throughout sub-Saharan Africa, parts of southern and Southeast Asia, a majority of the Indomalayan Islands, Reunion Island, and Madagascar. The genus is composed of 14 recognized species with seven distributed throughout sub-Saharan Africa including: (S. dinganii (A. Smith, 1833), S. leucogaster (Cretzschmar, 1830), S. nigritellus de Winton, 1899, S. nigrita (Schreber, 1774), S. nucella Robbins, 1983, S. nux Thomas, 1904, and S. viridis (Peters, 1852). The remaining species include four from southern and southeast Asia (S. celebensis Sody, 1928; S. collinus Sody 1936; S. heathi (Horsfield, 1831); S. kuhlii Leach, 1821), two on Madagascar (S. sp. nov. Goodman et al., in press; and S. robustus Milne-Edwards, 1881), and one endemic to Reunion Island (S. borbonicus (E. Geoffroy, 1803). The systematics and taxonomy of this genus have been controversial and continue to be confusing. The genus is plagued with problems in species definition and the systematic relationships among members of the genus are poorly understood. The major goal of this study was to use a molecular phylogenetic approach to clarify some of the controversy and confusion surrounding the members of this genus. Nucleotide differences from mtDNA and the Y chromosome were used to examine phylogenetic patterns within Scotophilus. Based on these data two new species of Scotophilus were identified. Phylogenetically, African Scotophilus were found to comprise a monophyletic group with S. nux as the most basal African taxon. Overall, the Asian S. kuhlii was the most basal taxon. A distant relationship was identified between S. kuhlii and S. heathi, the other Asian species examined. The multiple origins of Malagasy Scotophilus are apparent as the two Malagasy taxa in the study do not share a sister-group relationship. The large bodied S. nigrita is closely related to S. dinganii and the S. dinganii-like species all share a close relationship. S. nigrita has a S. dinganii-like mtDNA haplotype and a very distinct zfy haplotype, suggesting a possible hybridization event with a S. dinganii-like ancestor.