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Heteroaryl nitrone spin traps have been suggested to act as free radical scavengers. The geometry optimizations and the single-point energies of the spin trapping reactions of the heteroaryl nitrones, 5,5-dimethylpyrroline-N-oxide (DMPO) and α-phenyl-N-t-butylnitrone (PBN) have been computationally studied using ab initio (Hartree-Fock (HF) and second-order Møller-Plesset (MP2)) methods and Density Functional Theory (DFT) methods. The effects of new heteroaryl substituents on a parent nitrone spin trap have been examined at the HF and MP2 levels with the 6-31G*, and cc-pVnZ (n=D, T, Q) basis sets. The thermodynamics of the spin trapping at the C-site and O-site with •H, •CH3 and •OH radicals were studied at the HF/6-31G* and DFT/m06/6-31G* levels. The addition reactions favor at the C-sites and the double adducts are thermodynamically more stable than the mono adducts. The spin trapping of DMPO, PBN and α(Z)-(3-methylfuroxan-4-yl)-N-tert-butylnitrone (FxBN) with •OH have also been studied.

The cyclic nitrone 5,5-dimethyl-1-pyrroline-N-oxide (DMPO), and the lesser known linear phenyl-N-tert-butylnitrone (PBN) and its phosphorylated analogues have been used as spin traps for the investigation of free radicals in biological systems. Theoretical work on these molecules suggests that there are important differences in their properties between biological systems and isolated molecules in the gas phase, most likely resulting from intra and intermolecular hydrogen bonding. Most dielectric solvation models such as the polarized continuum model and COSMO are incapable of direct determination of solvent-spin trap chemical interactions. To examine this, hybrid models incorporating COSMO for long range effects and discrete solvent molecules for short range effects, at the DFT/B3LYP/6-31G* level of theory, have been used to study the stabilization and alteration of the spin trap molecules properties in protic and aprotic polar solvents. The hybrid models have been successfully implemented to support the prominent role played by hydrogen bonding interactions in the stabilization of spin traps.

Há, no Brasil, uma enorme diversidade de espécies vegetais, e um conhecimento popular de várias propriedades medicinais das mesmas. Dentre os estudos realizados com extratos de plantas, há um interesse especial na atividade antioxidante. Este trabalho, focado em atividade antioxidante, é dividido em duas partes: a primeira, utiliza a técnica de RPE para estudar a ação dos antioxidantes neutralizando os radicais livres, enquanto que a segunda utiliza a TFD para, em simulação computacional, ajudar a entender os resultados obtidos na primeira parte. Foram analisados 10 extratos vegetais: Swartzia langsdorffii, Machaerium villosum, Pterogyne nitens, Maytenus ilicifolia (casca de raiz), Pera glabrata, Aegiphyla sellowiana, Copaifera langsdorffii, Chrysophyllum inornatum, Iryanthera juruensis (folhas e sementes), Didymopanax vinosum. O estudo da atividade antioxidante com RPE utiliza dois métodos diferentes: o primeiro método mede a atividade antioxidante por meio do controle da quantidade de radicais livres, TEMPOL e DPPH, em contato com o extrato vegetal, enquanto que o segundo método utiliza o spin trap DMPO em conjunto com a reação de Fenton (Fe2+ + H2O2 => Fe3+ + HO- + HO) para analisar a ação dos extratos vegetais contra o radical hidroxila (OH?). A simulação computacional dos compostos TEMPOL, DPPH e DMPO é realizada em um método de primeiros princípios na Teoria do Funcional da Densidade, com uso de pseudopotenciais. O código utilizado é o SIESTA. As conclusões indicam que o extrato de Iryanthera juruensis, tanto de folhas quanto de sementes, exibe atividades antioxidantes bastante acentuadas, em todos os métodos utilizados. A simulação computacional aponta o TEMPOL menos reativo que o DPPH, devido a menor energia liberada em sua reação de redução. Sabendo que algumas destas espécies já são usadas popularmente por propriedades medicinais, estudos futuros para a correta identificação do agente antioxidante e seu possível uso, tanto na indústria alimentícia quanto na farmacêutica, deverão ser realizados. / There is, in Brazil, a great diversity of vegetable species, and a popular knowledge of several medicinal properties of the some of them. In studies carried out with plants? extracts, there is special interest in antioxidant activities. This work, focused in antioxidant activity, is divided in two parts: the first uses EPR technique to study the antioxidant activities neutralizing free radicals, while the second one uses DFT, in computational simulation, to understand the results obtained from the first part. Ten vegetable extracts were analyzed: Swartzia langsdorffii, Machaerium villosum, Pterogyne nitens, Maytenus ilicifolia (bark root extracts), Pera glabrata, Aegiphyla sellowiana, Copaifera langsdorffii, Chrysophyllum inornatum, Iryanthera juruensis (leaves and seeds), Didymopanax vinosum. The study with EPR uses two different methods: the first method measures the antioxidant activity by monitoring the amount of free radicals, DPPH and TEMPOL, that are in contact with the plant extract, the second method uses spin trap DMPO with Fenton reaction (Fe2+ + H2O2 => Fe3+ + HO- + HO) for the study of the plant extract antioxidant activity against the hydroxyl radical (OH?). The computational simulation of TEMPOL, DPPH and DMPO is carried out using a method of first principles within the Density Functional Theory and pseudopotentials. The code is SIESTA. The conclusions indicate that the Iryanthera juruensis extract, as of leaves as of seeds, exhibits accentuated antioxidants activities, in all of the used methods. The computational simulation indicated that the TEMPOL is less reactive than the DPPH, because the lower energy in its reduction reaction. As some of these species are already used popularly by medicinal properties, future studies for correct identification of the antioxidant compounds and its possible use, as in the food industry as in the pharmaceutical industry, should be realized.

Há, no Brasil, uma enorme diversidade de espécies vegetais, e um conhecimento popular de várias propriedades medicinais das mesmas. Dentre os estudos realizados com extratos de plantas, há um interesse especial na atividade antioxidante. Este trabalho, focado em atividade antioxidante, é dividido em duas partes: a primeira, utiliza a técnica de RPE para estudar a ação dos antioxidantes neutralizando os radicais livres, enquanto que a segunda utiliza a TFD para, em simulação computacional, ajudar a entender os resultados obtidos na primeira parte. Foram analisados 10 extratos vegetais: Swartzia langsdorffii, Machaerium villosum, Pterogyne nitens, Maytenus ilicifolia (casca de raiz), Pera glabrata, Aegiphyla sellowiana, Copaifera langsdorffii, Chrysophyllum inornatum, Iryanthera juruensis (folhas e sementes), Didymopanax vinosum. O estudo da atividade antioxidante com RPE utiliza dois métodos diferentes: o primeiro método mede a atividade antioxidante por meio do controle da quantidade de radicais livres, TEMPOL e DPPH, em contato com o extrato vegetal, enquanto que o segundo método utiliza o spin trap DMPO em conjunto com a reação de Fenton (Fe2+ + H2O2 => Fe3+ + HO- + HO) para analisar a ação dos extratos vegetais contra o radical hidroxila (OH?). A simulação computacional dos compostos TEMPOL, DPPH e DMPO é realizada em um método de primeiros princípios na Teoria do Funcional da Densidade, com uso de pseudopotenciais. O código utilizado é o SIESTA. As conclusões indicam que o extrato de Iryanthera juruensis, tanto de folhas quanto de sementes, exibe atividades antioxidantes bastante acentuadas, em todos os métodos utilizados. A simulação computacional aponta o TEMPOL menos reativo que o DPPH, devido a menor energia liberada em sua reação de redução. Sabendo que algumas destas espécies já são usadas popularmente por propriedades medicinais, estudos futuros para a correta identificação do agente antioxidante e seu possível uso, tanto na indústria alimentícia quanto na farmacêutica, deverão ser realizados. / There is, in Brazil, a great diversity of vegetable species, and a popular knowledge of several medicinal properties of the some of them. In studies carried out with plants? extracts, there is special interest in antioxidant activities. This work, focused in antioxidant activity, is divided in two parts: the first uses EPR technique to study the antioxidant activities neutralizing free radicals, while the second one uses DFT, in computational simulation, to understand the results obtained from the first part. Ten vegetable extracts were analyzed: Swartzia langsdorffii, Machaerium villosum, Pterogyne nitens, Maytenus ilicifolia (bark root extracts), Pera glabrata, Aegiphyla sellowiana, Copaifera langsdorffii, Chrysophyllum inornatum, Iryanthera juruensis (leaves and seeds), Didymopanax vinosum. The study with EPR uses two different methods: the first method measures the antioxidant activity by monitoring the amount of free radicals, DPPH and TEMPOL, that are in contact with the plant extract, the second method uses spin trap DMPO with Fenton reaction (Fe2+ + H2O2 => Fe3+ + HO- + HO) for the study of the plant extract antioxidant activity against the hydroxyl radical (OH?). The computational simulation of TEMPOL, DPPH and DMPO is carried out using a method of first principles within the Density Functional Theory and pseudopotentials. The code is SIESTA. The conclusions indicate that the Iryanthera juruensis extract, as of leaves as of seeds, exhibits accentuated antioxidants activities, in all of the used methods. The computational simulation indicated that the TEMPOL is less reactive than the DPPH, because the lower energy in its reduction reaction. As some of these species are already used popularly by medicinal properties, future studies for correct identification of the antioxidant compounds and its possible use, as in the food industry as in the pharmaceutical industry, should be realized.

The DMPO type spin trap 5,5-Dimethyl-1-pyrroline N-oxide (DMPO) and the exceptionally similar spin trap 2-ethoxycarbonyl-2-methyl-3,4-dihydro-2H-pyrrole-l-oxide (EMPO) are widely studied in computational and theoretical works. This particular study examines the addition reactions that both these molecules undergo with the carcinogenic hydroxyl radical. This work used a relatively new approximation method, called the correlation consistent composite approach or ccCA, for carrying out quantum mechanical calculations to give the free energies of the products and reactants of the reactions. The free energies are to be used to extrapolate the rate constants of the reactions from the Arrhenius equation. Though both the spin traps studied have been widely examined and assessed in both theoretical and experimental work, accurately calculated rate constants have not been previously obtained using computational methods. The results obtained here will help to assess the efficiency and the accuracy of the ccCA method, as well as lead to the design of better, more novel spin traps.

Dans la recherche de nouveaux pièges pour identifier par RPE les radicaux libres présents dans les milieux biologiques, particulièrement le superoxyde et le radical hydroxyle, le laboratoire a récemment mis au point une nouvelle nitrone, le 2-diéthoxyphosphoryl-2-méthyl-3,4-dihydro-2H- pyrrole-1-oxyde (DEPMPO), qui présente les avantages suivants par rapport au 2,2- diméthyl-3,4-dihydro-2H-pyrrole-1-oxyde (DMPO) couramment utilisé : meilleure persistance de l'adduit du superoxyde DEPMPO-OOH, absence de décomposition spontanée de cet adduit en l'adduit DEPMPO-OH, moindre sensibilité à l'addition nucléophile de l'eau. Ces caractéristiques sont liées à l'introduction du groupement -P(O)(OEt)2 en position 2 du cycle. L'objectif de notre étude a été de synthétiser et tester plusieurs nitrones pour mieux cerner les effets électroniques et stériques du groupement phosphoré. Nous avons préparé et testé trois nouvelles nitrones, le 2-diéthoxyphosphorylméthyl-2-méthyl-3,4- dihydro-2H-pyrrole-1-oxyde (ESP), le 2,2-bisdiéthoxyphosphoryl-3,4-dihydro-2H-pyrrole- 1-oxyde (DPBO) et le 2-éthoxycarbonyl-2-méthyl-3,4-dihydro-2H-pyrrole-1-oxyde (EMPO). Dans ESP le groupement -P(O)(OEt)2 est éloigné du cycle par un méthylène et ses performances dans le piégeage du superoxyde sont proches de celles de la DMPO. Dans la DPBO, l'introduction d'un second groupement -P(O)(OEt)2 ne semble pas stabiliser l'adduit DPBO-OOH. L'EMPO, où le groupement phosphoré est remplacé par un groupement -CO 2 Et, moins fortement électroattracteur, présente un comportement global plus proche de celui de la DEPMPO. La principale différence observée dans les propriétés de piégeage de toutes ces nitrones concerne la persistance des adduits du superoxyde. D'autres nitrones s'inscrivant dans cette étude sont en cours d'évaluation au laboratoire.

Dans la recherche de nouveaux pièges pour identifier par RPE les radicaux libres présents dans les milieux biologiques, particulièrement le superoxyde et le radical hydroxyle, le laboratoire a récemment mis au point une nouvelle nitrone, le 2-diéthoxyphosphoryl-2-méthyl-3,4-dihydro-2H- pyrrole-1-oxyde (DEPMPO), qui présente les avantages suivants par rapport au 2,2- diméthyl-3,4-dihydro-2H-pyrrole-1-oxyde (DMPO) couramment utilisé : meilleure persistance de l'adduit du superoxyde DEPMPO-OOH, absence de décomposition spontanée de cet adduit en l'adduit DEPMPO-OH, moindre sensibilité à l'addition nucléophile de l'eau. Ces caractéristiques sont liées à l'introduction du groupement -P(O)(OEt)2 en position 2 du cycle. L'objectif de notre étude a été de synthétiser et tester plusieurs nitrones pour mieux cerner les effets électroniques et stériques du groupement phosphoré. Nous avons préparé et testé trois nouvelles nitrones, le 2-diéthoxyphosphorylméthyl-2-méthyl-3,4- dihydro-2H-pyrrole-1-oxyde (ESP), le 2,2-bisdiéthoxyphosphoryl-3,4-dihydro-2H-pyrrole- 1-oxyde (DPBO) et le 2-éthoxycarbonyl-2-méthyl-3,4-dihydro-2H-pyrrole-1-oxyde (EMPO). Dans ESP le groupement -P(O)(OEt)2 est éloigné du cycle par un méthylène et ses performances dans le piégeage du superoxyde sont proches de celles de la DMPO. Dans la DPBO, l'introduction d'un second groupement -P(O)(OEt)2 ne semble pas stabiliser l'adduit DPBO-OOH. L'EMPO, où le groupement phosphoré est remplacé par un groupement -CO 2 Et, moins fortement électroattracteur, présente un comportement global plus proche de celui de la DEPMPO. La principale différence observée dans les propriétés de piégeage de toutes ces nitrones concerne la persistance des adduits du superoxyde. D'autres nitrones s'inscrivant dans cette étude sont en cours d'évaluation au laboratoire.

<p dir="ltr">The chemical constituents of terrestrial and atmospheric waters originate from biomass burning, fertilizer runoff, and anthropogenic activity, among other sources, and their multi-phase chemistry is complex. Sunlight plays an essential role in aquatic chemistry. Photosensitizers in terrestrial and atmospheric waters absorb light to form highly reactive species such as triplet excited carbon (³C*), hydroxyl radical (•OH), and singlet oxygen (¹O₂), driving the photochemical transformations of dissolved organic matter (DOM) in the aqueous phase. Of note, these reactive species transform DOM compounds that do not undergo direct photolysis. DOM frequently undergoes a change in optical properties following photochemical processing, with implications for air quality, water quality, and human and animal health. The presence of inorganic minerals, such as the fertilizer compound struvite, in terrestrial or atmospheric waters introduces further complexity and impacts the photochemical processes that occur. Simplified proxy systems are created in the laboratory to simulate aquatic photochemical processes and evaluate the formation and/or photodegradation of photoproducts. These mixtures typically consist of a representative organic carbon (OC) compound and a photosensitizer, along with struvite or another inorganic mineral.</p>