The power of parallel supercomputing resources has progressed to the point where first-principles calculations involving systems up to 10³ atoms are feasible, allowing ab initio exploration of increasingly complex systems such as amorphous networks, nanostructures, and large defect clusters. Expansion of our fundamental understanding of modified Si-based materials is paramount, as these materials will likely flourish in the foreseeable cost-driven future in diverse micro- and nanotechnologies. Here, density-functional theory calculations within the generalized gradient approximation are applied to refine configurations of Si-based materials generated from Metropolis Monte Carlo simulations and study their resultant structural properties. Particular emphasis is given to the contributions of strain and disorder on the mechanical, optical, and electronic properties of modified Si-based materials in which aspects of compositional variation, phase, strain scheme, morphology, native defect incorporation, and quantum confinement are considered. The simulation strategies discussed are easily extendable to other semiconductor systems. / text

The goal of this research is to obtain the adsorption mechanisms of toxic mercury-containing species (Hg, HgCl and HgCl2) and carbon dioxide (CO2) on inorganic solid surfaces using theoretically predicted results because experiments have been unable to unravel the involved issues. The understanding of the adsorption mechanisms of the mercury species and carbon dioxide from flue gases is important when considering mercury capture from coal-fired power plants, artisanal gold mining, and cement manufacturing industries. The current research attempts to explain each adsorption mechanism for mercury species, and those for carbon dioxide adsorption, on the surfaces through optimized geometries, energies and thermodynamic data.To investigate this research, density functional theory, which is one of useful tools for analyzing reactions on solid surfaces, was used to determine first principles-based theoretical adsorption models. Mainly, results from computational work indicate that mercury-containing species and carbon dioxide adsorption on calcium oxide surfaces and elemental mercury adsorption on a gehlenite surface are exothermic reactions. Calcium oxide is a promising adsorbent for oxidized mercury (HgCl and HgCl2), but not for elemental Hg. Interestingly, the elemental mercury, which is the major form (> 90%) in the flue gases of the coal-combustion power plants, is chemisorbed on a gehlenite surface, which is partially composed of calcium oxide and comes from a mineral transition at high temperature. Strong adsorption on this inorganic sorbent is enhanced at high temperatures even though this adsorption process is exothermic. In addition, CaO surfaces are effective at capturing CO2, generating calcium carbonate compounds at flue gas temperatures, and water vapor enhances its adsorbability due to a larger CO2 adsorption energy. The current research shows that inorganic sorbents are not only effective in removing the elemental and oxidized forms of mercury but also in mineralizing CO2 at high temperatures into a solid form. The mercury species and carbon dioxide adsorption mechanisms investigated in this research may be utilized in the application of more efficient mercury and carbon dioxide control technologies. Future work will examine the reaction transition state and predict the kinetic data of the carbonation reactions, and, additionally, may prove the hypothesis that H2O molecules play a role as catalysts, increasing reaction rates.

The transfer of electrons to and from a molecule is one of the more fundamental and important chemical processes. One such important example is the reduction-oxidation (redox) cycles in catalysts and enzymes. In the hydrogenase enzymes, adding and removing electrons is one of the key processes for generating H₂ from water molecules. Finding a direct free energy relation between the vertical ionization energies (IE(V)) measured spectroscopically by gas-phase photoelectron spectroscopy and the oxidation potentials (E(1/2)) measured thermodynamically in solution by cyclic voltammetry (CV) for molecules is an important aspect for developing effective catalysts. In this study, a series of organometallic compounds such as metallocenes were used for investigating the free energy relationships and catalysts inspired by the active sites of [FeFe]-hydrogenases enzymes were evaluated for their ability to produce H₂ from electrocatalytic reduction of weak acids. The first part of the dissertation explores metallocenes of the form (η⁵-C₅H₅)₂M (M= Fe, Ru, Os, Co, Ni) as the model for developing the free energy relation between gas phase ionization energies (IE(V)) and solution oxidation potentials (E(1/2)). It was found that computing the electronic properties of Cp₂Fe, Cp₂Ru, and Cp₂Os using VWN-Stoll and OPBE density functional theory (DFT) functional was successful with root mean square deviation (RMSD) of 0.02 eV between the experimental and calculated ionization energies. However, calculated ionization energies of Cp₂Co and Cp₂Ni were less successful with RMSD of 0.3 eV between the experimental and calculated ionization energies. Introduction of the B3LYP or M06 hybrid DFT functionals yielded much improved results (0.1 eV) over the previous combinations of DFT functional for Cp2Co and Cp2Ni. The energy relation between the two experimental measurements was established and further computational studies revealed that the solvation energy was the largest energy contribution between IE(V) and E(1/2) in the five studied metallocenes. The RMSD of the calculated oxidation potentials, after adjusting for the error in gas-phase ionization energies, was 0.09 V. The second part of the dissertation explores a series of catalysts inspired by the active sites of [FeFe]-hydrogenase enzymes; μ-(2,3-pyrazinedithiolato)diironhexacarbonyl (PzDT-cat), Fe₂(μ-X₂C₅H₈O)(CO)₆ (where X = S, Se, Te), and Fe₂(μ-1,3-SC₃H₆X)(CO)₆ (where X = Se and Te) for their ability to produce H₂ from weak acids utilizing the computational techniques and knowledge gained from the metallocene study. Even though the overall electronic perturbation from μ-(1,2-benzenedithiolato)diironhexacarbonyl (BDT-cat) to μ-(2,3-pyridinedithiolato)diironhexacarbonyl (PyDT-cat) to PzDT-cat is found to be small, the reduction potential of PzDT-cat was found to be 0.15 V less negative than that of BDT-cat resulting in less energy required for initiating electrocatalytic H₂ production over the BDT-cat and PyDT-cat. Lower reorganization energy has been achieved by substitutions of larger chalcogens at the Fe₂S₂ core. However, the electrocatalytic production of H₂ from acetic acid in acetonitrile was found to be diminished upon going from analogous S to Se to Te species. This is ascribed to the increase in the Fe–Fe bond distance with a corresponding increase in the size of the chalcogen atoms from S to Se to Te, disfavoring the formation of a carbonyl-bridged structure in the anion which is thought to be critical to the mechanism of H₂ production.

Cubic boron nitride (c-BN) has been in focus for several years due to its interesting properties. The possibility for large area chemical vapor deposition (CVD) is a requirement for the realization of these different properties in various applications. Unfortunately, there are at present severe problems in the CVD growth of c-BN. The purpose with this research project has been to theoretically investigate, using density functional theory (DFT) calculations, the possibility for a layer-by-layer CVD growth of c-BN.  The results, in addition with experimental work by Zhang et al.57,  indicate that plasma-enhanced atomic layer deposition (PEALD), using a BF3-H2-NH3-F2 pulse cycle and a diamond substrate, is a promising method for deposition of c-BN films. The gaseous species will decompose in the plasma and form BFx, H, NHx, and F species (x = 0, 1, 2, 3). The H and F radicals will uphold the cubic structure by completely hydrogenate, or fluorinate, the growing surface. Surface radical sites will appear during the growth process as a result of atomic H, or F, abstraction reactions. However, introduction of energy (e.g., ionic bombardment) is probably necessary to promote removal of H from the surface. The addition of NHx growth species (x = 0, 1, 2) to the B radical sites, and BFx growth species (x = 0, 1, 2) to N radical sites, will then result in a continuous growth of c-BN.

No description available.

Chemical reactions usually involve the conversion of reactants to products by overcoming an energetic barrier. Most commonly, this process can be assisted by adding energy through heat (thermochemistry), light (photochemistry) or electric current (electrochemistry). The fourth option is to overcome the reaction barrier through application of mechanical work, termed mechanochemistry. This method has received much attention from the scientific community in the last decade. Both theoretical and experimental studies have been performed, demonstrating the ability of mechanochemistry to activate reactions, with a strong focus on ringopening reactions. The vast majority of studies have focused on unimolecular reactions involving bond-rupture, which is very intuitively activated by the application of tensile stress. However, bimolecular reactions, which often involve bond formation as well as rupture, have received much less attention. In this thesis, we seek to change this by undertaking an in-depth study of mechanochemical activation of addition reactions to carbon-carbon double bonds, which involve the formation of two single bonds while the double bond becomes a single bond. We observe that large barrier changes can be induced by applying external force to reactions of this type, and the magnitude of these changes can be controlled by the choice of alkene substrate. By studying the changes induced in the geometry of the substrate, we are able to begin explaining the origins of the barrier reduction effect. In addition, by studying the contributions to the barrier change from mechanical work and the contributions from geometry changes, we discover that steric hindrance to a reaction can play a very significant role in the mechanochemical activation of the reaction. / Thesis (Master, Chemistry) -- Queen's University, 2010-11-29 10:43:04.945

In this thesis, we have studied the electronic and optical properties of solar energy m-terials. The studies are performed in the framework of density functional theory (DFT), GW, Bethe-Salpeter equation (BSE) approaches and Kinetic Monte Carlo (KMC). We present four sets of results. In the first part, we report our results on the band gap engineering issues for BiNbO4and NaTaO3, both of which are good photocatalysts. The band gap tuning is required for these materials in order to achieve the maximum solar to hydrogen conversion efficiency. The most common method for the band gap reduction is an introduction of foreign elements. The mono-doping in the system generates electrons or holes states near band edges, which reduce the efficiency of photocatalytic process. Co-doping with anion and cation or anion and anion can provide a clean band gap. We have shown that further band gap reduction can be achieved by double-hole mediated coupling between two anionic dopants. In the second part, the structure and optical properties of (CdSxSe1x)42nanoclusters have been studied. Within this study, the structures of the (CdS)42, (CdSe)42, Cd42Se32S10, Cd42Se22S20, and Cd42Se10S32 clusters have been determined using the simulated annealing method. Factors influencing the band gap value have been analyzed. We show that the gap is most significantly reduced when strongly under coordinated atoms are present on the surface of the nanoclusters. In addition, the band gap depends on the S concentration as well as on the distribution of the S and Se atoms in the clusters. We present the optical absorption spectra calculated with BSE and random phase approximation (RPA) methods based on the GW corrected quasiparticle energies. In the third part, we have employed the state-of-art computational methods to investigate the electronic structure and optical properties of TiO2high pressure polymorphs. GW and BSE methods have been used in these calculations. Our calculations suggest that the band gap of fluorite and pyrite phases have optimal values for the photocatalytic process of decomposing water in the visible light range. In the fourth part we have built a kinetic model of the first water monolayer growth on TiO2(110) using the kinetic Monte Carlo (KMC) method based on parameters describing water diffusion and dissociation obtained from first principle calculations. Our simulations reproduce the experimental trends and rationalize these observations in terms of a competition between different elementary processes. At high temperatures our simulation shows that the structure is well equilibrated, while at lower temperatures adsorbed water molecules are trapped in hydrogen-bonded chains around pairs of hydroxyl groups, causing the observed higher number of molecularly adsorbed species at lower temperature. / <p>QC 20140603</p>

This thesis discusses the chemistry and physics of Cu and H2O on ZnO surfaces, based primarily on results from quantum chemical calculations. The underlying context is heterogeneous catalysis, where Cu/ZnO-mixtures are used in the industrial synthesis of methanol and in the water gas shift reaction. Electron transfer between small Cu clusters and ZnO is central to this thesis, as are the design and use of models that can describe realistic and very large-scale ZnO surface structures while still retaining the electronic nature of the system. Method and model enhancements as well as tests and validations constitute a large part of this thesis. The thesis demonstrates that the charges of small Cu clusters, adsorbed on the non-polar ZnO(10-10) surface, depend on whether the Cu clusters contain an even or odd number of atoms, and whether water is present (water can induce electron transfer from Cu to ZnO). On the polar Zn-terminated ZnO(0001) surface, Cu becomes negatively charged, which causes it to attract positively charged subsurface defects and to wet the ZnO(0001) surface at elevated temperatures. When a Cu cluster on a ZnO surface becomes positively charged, this happens because it donates an electron to the ZnO conduction band. Hence, it is necessary to use a method which describes the ZnO band gap correctly, and we show that a hybrid density functional, which includes a fraction of Hartree-Fock exchange, fulfills this requirement. When the ZnO conduction band becomes populated by electrons from Cu, band-filling occurs, which affects the adsorption energy. The band-filling correction is presented as a means to extrapolate the calculated adsorption energy under periodic boundary conditions to the zero coverage (isolated adsorbate, infinite supercell) limit. A part of this thesis concerns the parameterization of the computationally very efficient SCC-DFTB method (density functional based tight binding with self-consistent charges), in a multi-scale modeling approach. Our findings suggest that the SCC-DFTB method satisfactorily describes the interaction between ZnO surfaces and water, as well as the stabilities of different surface reconstructions (such as triangularly and hexagonally shaped pits) at the polar ZnO(0001) and ZnO(000-1) surfaces.

This thesis presents a number of largely independent forays into developing an understanding of the unique chemistry of transition metal clusters. The first chapter of this thesis represents an initial foray into mapping the chemical reactivity of transition metal clusters - a monumental task that will doubtless continue for some time. The small slice undertaken in this work investigates the reactivity with CO of a series of the smallest possible metal clusters; 4d (Nb - Ag) homonuclear metal trimers. In Chapter 2, two known transition metal clusters were studied using CASSCF (MCSCF) and MRCI methods, only to find that DFT methods provided more accurate Ionisation Potentials (IPs). Thus Chapter 3 was devoted to optimising a density functional to predict IPs. As clusters get larger, the number of possible structures grows rapidly too large for human intuition to handle, thus Chapter 4 is devoted to the use of an automated stochastic algorithm, “Kick”, for structure elucidation. Chapter 5 improves on this algorithm, by permitting chemically sensible molecular fragments to be defined and used. Chapter 6 then comes full circle and uses the new Kick algorithm to investigate the reaction of CO with a series of mono-substituted niobium tetramers (i.e. Nb₃X). / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1350246 / Thesis (Ph.D.) - University of Adelaide, School of Chemistry and Physics, 2009

This thesis presents a number of largely independent forays into developing an understanding of the unique chemistry of transition metal clusters. The first chapter of this thesis represents an initial foray into mapping the chemical reactivity of transition metal clusters - a monumental task that will doubtless continue for some time. The small slice undertaken in this work investigates the reactivity with CO of a series of the smallest possible metal clusters; 4d (Nb - Ag) homonuclear metal trimers. In Chapter 2, two known transition metal clusters were studied using CASSCF (MCSCF) and MRCI methods, only to find that DFT methods provided more accurate Ionisation Potentials (IPs). Thus Chapter 3 was devoted to optimising a density functional to predict IPs. As clusters get larger, the number of possible structures grows rapidly too large for human intuition to handle, thus Chapter 4 is devoted to the use of an automated stochastic algorithm, “Kick”, for structure elucidation. Chapter 5 improves on this algorithm, by permitting chemically sensible molecular fragments to be defined and used. Chapter 6 then comes full circle and uses the new Kick algorithm to investigate the reaction of CO with a series of mono-substituted niobium tetramers (i.e. Nb₃X). / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1350246 / Thesis (Ph.D.) - University of Adelaide, School of Chemistry and Physics, 2009