Göttingen, Univ., Diss., 2003.

Göttingen, University, Diss., 2003.

Roughly 79-100% of maize in the United States (US) is treated with a neonicotinoid seed treatment (NST), and transgenic (GMO) maize, Zea mays L. (Poaceae), that produces insecticidal toxins by way of genes derived from Bacillus thuringiensis (Bt), occupies more than 75% of maize acreage. Among a variety of secondary pests targeted by NSTs, the primary soil-dwelling pest targeted by Bt maize is the western corn rootworm (WCR), Diabrotica virgifera virgifera LeConte (Coleoptera: Chrysomelidae). Transgenic Bt technology has dramatically reduced insecticide use for WCR, and insect resistance poses the greatest threat to its utility. To delay resistance to Bt traits, in 2010 the US Environmental Protection Agency (EPA) approved a "refuge-in-a-bag" (RIB) insect resistance management (IRM) strategy, where 5% of seeds do not express Bt toxins (i.e., "refuge" maize). The RIB strategy is intended to preserve Bt trait effectiveness if mating between 'resistant' insects from Bt plants and 'susceptible' insects from refuge plants occurs at a high enough frequency. Investigations into the effectiveness of RIB for WCR have shown that beetles emerged from Bt plants tend to vastly outnumber beetles emerged from refuge plants, which contributes to low rates of mixed mating. Large proportions of Bt beetles is one of several factors that contributes to resistance development, and resistance to all currently-available WCR-Bt traits has been documented. I conducted field experiments in two regions (Indiana and Virginia) comparing refuge beetle proportions in NST-treated (NST+) and NST-untreated (NST-) 5% RIB maize, to determine whether NSTs may be limiting refuge beetle emergence. To assess advantages of combining use of Bt and NSTs, I compared stand, root injury rating, and yield between NST+, NST-, Bt and non-Bt maize in both states. I also measured neonicotinoid residues in soil, water, and stream sediment within and surrounding fields of maize, to study the off-site movement and soil residence time of these compounds. I found that 5% seed blends did not produce large populations of refuge beetles in any site-year, and that NSTs showed inconsistent effects on refuge beetle populations. Treatment comparisons showed inconsistent benefits of NSTs when combined with Bt traits. I detected neonicotinoid residues in soil matrices throughout the growing season (range: 0 – 417.42 ppb), including prior to planting, suggesting year-round presence of these compounds. My results suggest that, while the effects of NSTs on Bt IRM may be inconsistent, the benefits of universally applying NSTs to Bt maize for soil pests may not be worth the ecological costs of doing so in all cases. / Doctor of Philosophy / About 75% of maize planted in the United States is encoded with genetic traits allowing them to manufacture insecticidal proteins which are toxic to key pests. These insecticidal proteins, known as "Bt toxins," are highly specific to targeted insects, and are virtually non-toxic all other animals and non-target insects. One target insect is the western corn rootworm (WCR), which feeds on and damages maize roots. In the past, WCR was controlled by applying millions of kilograms of chemical insecticides every year, at ever-increasing rates, to compensate for reduced effectiveness due to pest resistance. "Bt" plants, were released for commercial use in the late 1990s; they reduced the need for growers to apply chemical insecticides for managing key pests. The Environmental Protection Agency established regulations aiming to maintain the effectiveness of Bt technology, which they declared have "provided substantial human health, environmental, and economic benefit." This Insect Resistance Management (IRM) strategy, also known as the "refuge" strategy, is meant to preserve Bt-susceptible insects so they can pass on their Bt-susceptible genes to successive generations. The refuge strategy works by incorporating a certain percentage of non-Bt plants per every field of Bt plants; if enough insects survive on these "refuge" plants to outnumber "resistant" insects, population-wide Bt-susceptibility may be maintained. While this strategy has been effective for other key maize pests, it is failing for WCR, evidenced by WCR populations that have developed Bt-resistance. We know current refuge configurations aren't producing enough refuge-WCR to mix sufficiently with resistant WCR, likely due to insufficient refuge sizes. I wanted to know whether the refuge strategy could be improved, if increasing refuge proportions is not an option. Considering that Bt toxins are only effective against a narrow range of insects, seed manufacturers always coat seeds with an insecticide to protect seedlings against other insects. These coatings, or neonicotinoid seed treatments (NSTs), are included on nearly all seed, including those reserved for Bt refuges. I conducted two years of field trials to investigate whether removing NSTs from refuge seeds would improve WCR-IRM by providing an insecticide-free "refuge." My results suggest that removing NSTs may increase refuge beetle proportions, however my results also show that refuge plant proportions are simply too small to support large enough refuge-WCR populations to delay resistance, regardless of whether NSTs are present or not. While NSTs may provide extra comfort to growers at little additional cost, questions regarding their necessity at current use patterns have been raised. Several studies have shown inconsistent benefits, and others have shown longer-than-expected persistence in the environment, movement into streams and groundwater, and even alterations to insect and non-insect animal communities associated with their use. I conducted research comparing their relative effectiveness against WCR and non-WCR insect pests in fields of Bt maize. Additionally, I scouted for their residues in soil collected in field margins, forests buffering streams, and in water collected from agricultural ditches and waterways neighboring fields. I found that, while NSTs produced higher plant populations, they rarely resulted in greater yields. I detected neonicotinoid residues in soil matrices throughout the growing season, including prior to planting, suggesting year-round presence of these compounds. My results suggest that, while the effects of NSTs on Bt IRM may be inconsistent, the benefits of universally applying NSTs to Bt maize for soil pests may not be worth the ecological costs of doing so in all cases.

No description available.

La plupart des toxines de Bacillus thuringiensis perméabilisent la membrane intestinale des insectes sensibles en formant des pores qui abolissent le potentiel électrique et les gradients ioniques. Plusieurs toxines ont été étudiées avec des vésicules purifiées de la bordure en brosse intestinale des insectes. Malheureusement, la membrane intestinale de beaucoup d’insectes ne forme pas des vésicules suffisamment étanches pour les expériences de perméabilisation. Une nouvelle technique utilisant des liposomes géants et une sonde de perméabilité membranaire a été développée pour caractériser deux nouvelles toxines particulièrement prometteuses pour le biocontrôle d’un des principaux ravageurs du maïs, la chrysomèle des racines du maïs (Diabrotica virgifera virgifera LeConte), Cry6Aa1 et la toxine binaire DS10/DS11. Les deux toxines perméabilisent efficacement les liposomes. La toxine binaire forme des pores qui sont légèrement sélectifs pour les cations, comme la plupart des toxines de B. thuringiensis. Bien que la Cry6Aa1 puisse former des pores sélectifs pour les anions, les résultats suggèrent aussi qu’elle pourrait, contrairement aux autres toxines de cette bactérie, ne former des pores qu’en présence d’une force ionique élevée. La formation des pores par ces deux toxines semble être sensible à la courbure de la membrane cible étant donné qu’elle est beaucoup plus efficace dans des liposomes géants que dans des liposomes de même composition, mais plus petits. Ce travail jette les bases de la mise au point d’une technique qui permettrait l’étude des toxines dans des liposomes géants enrichis avec des protéines et des lipides provenant de la membrane intestinale des insectes cibles. / Most Bacillus thuringiensis toxins permeabilize the intestinal membrane of susceptible insects by forming pores that abolish transmembrane electrical potentials and ionic gradients. Several toxins have been studied using brush border membrane vesicles purified from the insect midgut. Unfortunately, the intestinal membrane from many insects does not form vesicles that are tight enough to be used in permeabilisation experiments. A new technique using giant liposomes and a membrane permeability probe was developed to evaluate the pore-forming ability of two particularly promising toxins for the biocontrol of a major corn pest, the Western corn rootworm (Diabrotica virgifera virgifera LeConte), Cry6Aa1 and the binary toxin DS10/DS11. Both toxins permeabilized the liposomes efficiently. However, analysis of the permeabilisation rates under different experimental conditions indicates that these toxins differ in their biophysical properties. The binary toxin forms pores which are slightly selective for cations, like most B. thuringiensis toxins. On the other hand, although the results suggest that Cry6Aa1 could form anion-selective pores, they could also indicate that, in contrast with other toxins produced by this bacterium, it could form pores only under high ionic strength conditions. Pore formation by both toxins appears to be sensitive to membrane curvature since it is much more efficient in giant liposomes than in liposomes with identical composition, but smaller in size. This study sets the bases for the development of a technique that would allow the toxins to be studied in giant liposomes enriched with proteins and lipids from the intestinal membrane of target insects.

[ES] Los viroides, genomas mínimos de RNA circular no codificante, monocatenarios y muy estructurados, parasitan factores celulares de las plantas para replicarse autónomamente, establecer infecciones sistémicas y usualmente causar enfermedades. Los de la familia Avsunviroidae se replican y acumulan en cloroplastos por un mecanismo de círculo rodante simétrico. Una RNA polimerasa cloroplástica produce concatémeros lineales de polaridad complementaria que son reducidos a monómeros por las ribozimas de cabeza de martillo (HHR) del concatémero. Producen extremos 5'-hidroxilo y 2',3'-fosfodiéster cíclico, que la isoforma cloroplástica de la tRNA ligasa convierte en enlaces 5',3'-fosfodiéster intramoleculares, generando viroides circulares de polaridad complementaria que pueden entrar en otra ronda de transcripción, simétrica a ésta. En esta Tesis se han analizado las secuencias y estructuras viroidales esenciales para su circularización, usando como modelo el viroide latente de berenjena (ELVd), que induce infecciones asintomáticas en berenjena. Expresamos en Escherichia coli precursores del ELVd(+) lineales flanqueados por dos copias de su HHR. Su procesamiento genera monómeros con los extremos adecuados para la ligación por la tRNA ligasa de la berenjena, que es coexpresada. Mutaciones puntuales y deleciones en el sitio nativo de ligación sugieren que solo el dominio HHR es esencial para la circularización. La conservación de la secuencia y estructura de la HHR con las del sustrato natural del enzima (los tRNAs) nos hacen proponer que la HHR del ELVd secuestra la ligasa mimetizando las características generales del bucle anticodón de los tRNAs. Este sistema de expresión permite también producir RNAs recombinantes, insertándolos en una posición particular del RNA del ELVd. Las quimeras son procesadas por las HHRs flanqueantes y sus extremos ligados por la tRNA ligasa. El andamiaje viroidal circular, compacto y posiblemente asociado a la ligasa, permite aumentar la vida media del RNA de interés y su acumulación en la bacteria. En esta Tesis adaptamos el sistema para producir RNAs de doble cadena (dsRNAs) que desencadenen interferencia por RNA (RNAi), un mecanismo de defensa y regulación génica eucariota basado en la complementariedad de bases entre RNAs. dsRNAs complementarios a genes endógenos reducen los niveles de sus transcritos y generan fenotipos de pérdida de función. Los insectos pueden tomar dsRNAs del ambiente, internalizarlos en sus células y distribuirlos sistémicamente, haciendo al RNAi una estrategia prometedora para el control de plagas. Para producir dsRNAs, separamos las repeticiones invertidas del gen diana que genera la horquilla con el cDNA de un intrón autocatalítico del grupo I de Tetrahymena thermophila, aumentando la estabilidad de los plásmidos de expresión. El intrón es eliminado tras la transcripción, resultando en una molécula viroidal de la que protruye el dsRNA de interés. Flanquear las repeticiones invertidas con una copia adicional permutada del intrón permite separar el ELVd del producto final, un dsRNA circular cerrado en ambos lados por pequeños bucles. Ambas moléculas poseen actividad reguladora: las quimeras viroide-dsRNA con homología al gen de la unión septada suave 1 del gusano de la raíz del maíz (Diabrotica virgifera virgifera) exhiben actividad insecticida oral contra las larvas similar a la de horquillas sintetizadas in vitro, y los dsRNAs circulares sin andamiaje viroidal homólogos al gen de la ATPasa vacuolar (subunidad A) y la proteína ribosomal S13 silencian eficientemente estos genes en adultos de la mosca del Mediterráneo (Ceratitis capitata); este caso es de especial relevancia al ser la primera demostración del RNAi para el control de esta plaga. En conclusión, a pesar de su limitada relevancia agrícola, el ELVd es útil para investigar la biología molecular de la familia Avsunviroidae y una poderosa herramienta biotecnológica en combinación con el sistema de expresión en E. coli. / [CA] Els viroides, genomes mínims d'RNA circular no codificant, monocatenaris i molt estructurats, parasiten factors cel·lulars de les plantes per a replicar-se autònomament, establir infeccions sistèmiques i usualment causar malalties. Els de la família Avsunviroidae es repliquen i acumulen en cloroplasts per un mecanisme de cercle rodant simètric. Una RNA polimerasa cloroplàstica produeix concatèmers lineals de polaritat complementària que són reduïts a monòmers per els ribozims de cap de martell (HHR) del concatèmer. Produeixen extrems 5'-hidroxil i 2',3'-fosfodièster cíclic, que la isoforma cloroplàstica de la tRNA lligasa converteix en enllaços 5',3'-fosfodièster intramoleculars, generant viroides circulars de polaritat complementària que poden entrar en una nova ronda de transcripció, simètrica a la primera. En aquesta Tesi s'han analitzat les seqüències i estructures viroidals essencials per a la seua circularització, emprant com a model el viroide latent d'albergínia (ELVd), que indueix infeccions asimptomàtiques en albergínia. Expressem en Escherichia coli precursors de l'ELVd(+) lineals flanquejats per dos còpies del seu HHR. El seu processament produeix monòmers amb els extrems apropiats per a la lligació mediada per la tRNA ligasa de l'albergínia, que és coexpressada. Mutacions puntuals i delecions en el lloc nadiu de lligació suggereixen que només el domini HHR és essencial per a la circularització. La conservació de la seqüència i estructura del HHR amb les del substrat natural de l'enzim (els tRNAs) ens fan proposar que el HHR de l'ELVd segresta la lligasa mimetitzant les característiques generals del bucle anticodó dels tRNAs. Aquest sistema d'expressió també permet produir RNAs recombinants, inserint-los en una posició particular de l'RNA de l'ELVd. Les quimeres són processades pels HHR flanquejants i els seus extrems lligats per la tRNA lligasa. L'RNA viroïdal circular, compacte i possiblement associat a la lligasa, permet augmentar la vida mitjana de l'RNA d'interés i la seua acumulació en els bacteris. En aquesta Tesi adaptem el sistema per a produir RNAs de doble cadena (dsRNAs) que desencadenen interferència per RNA (RNAi), un mecanisme de defensa i regulació gènica eucariota basat en la complementarietat de bases entre RNAs. dsRNAs complementaris a gens endògens redueixen els nivells dels seus transcrits i generen fenotips de pèrdua de funció. Els insectes poden prendre dsRNAs de l'ambient, internalitzar-los en les seues cèl·lules i distribuir-los sistèmicament, fent a l'RNAi una estratègia prometedora en el control de plagues. Per a produir dsRNAs, separem les repeticions invertides del gen diana que genera la forqueta amb el cDNA d'un intró autocatalític del grup I de Tetrahymena thermophila, augmentant l'estabilitat dels plasmidis d'expressió. L'intró és eliminat després de la transcripció, resultant en una molècula viroïdal de la qual protrueix el dsRNA d'interés. Flanquejar les repeticions invertides amb una còpia addicional permutada de l'intró permet separar l'ELVd del producte final, un dsRNA circular tancat als dos costats per xicotets bucles. Els dos tipus de molècules posseeixen activitat reguladora: les quimeres viroide-dsRNA amb homologia al gen de la unió septada suau 1 del cuc de l'arrel de la dacsa (Diabrotica virgifera virgifera) exhibeixen activitat insecticida oral contra les larves similar a la de forquetes sintetitzades in vitro, i els dsRNAs circulars sense l'RNA viroïdal homòlegs al gen de la ATPasa vacuolar (subunitat A) i la proteïna ribosomal S13 silencien eficientment aquests gens en adults de la mosca del Mediterrani (Ceratitis capitata); aquest cas és d'especial rellevància perquè és la primera demostració de l'RNAi per al control d'aquesta plaga. En conclusió, malgrat la seua limitada rellevància agrícola l'ELVd és útil per a investigar la biologia molecular de la família Avsunviroidae i una poderosa ferramenta biotecnològica en combinació amb el sistema d'expressió en E. coli. / [EN] Viroids, minimal genomes of non-coding circular RNA, single-stranded and highly structured, parasitize plant cellular factors to replicate autonomously, establish systemic infections, and typically cause disease. Those of the family Avsunviroidae replicate and accumulate in chloroplasts by a symmetrical rolling circle mechanism. A chloroplast RNA polymerase produces linear concatemers of complementary polarity that are reduced to monomers by the hammerhead ribozymes (HHR) of the concatemer. They produce 5'-hydroxyl and 2',3'-cyclic phosphodiester ends, which the chloroplastic isoform of tRNA ligase converts to intramolecular 5',3'-phosphodiester bonds, generating circular viroids of complementary polarity that can enter another round of transcription, symmetric to the first one. In this Thesis, the viroid sequences and structures essential for its circularization have been analyzed, using as a model the eggplant latent viroid (ELVd), which induces asymptomatic infections in eggplant. We expressed in Escherichia coli linear ELVd(+) precursors flanked by two copies of its HHR. Its processing generates monomers with suitable ends for ligation by the eggplant tRNA ligase, which is co-expressed. Point mutations and deletions at the wild-type ligation site suggest that only the HHR domain is essential for circularization. The conservation of the sequence and structure of the HHR with those of the natural substrate of the enzyme (the tRNAs) lead us to propose that the HHR of the ELVd hijacks the ligase, mimicking the general characteristics of the anticodon loop of the tRNAs. This expression system also allows the production of recombinant RNAs, inserting them into a particular position of the ELVd RNA. Chimeras are processed by flanking HHRs and their ends ligated by the tRNA ligase. The compact, circular viroidal scaffold, possibly associated with the ligase, allows increasing the half-life of the RNA of interest and its accumulation in the bacteria. In this Thesis we adapt the system to produce double-stranded RNAs (dsRNAs) that trigger RNA interference (RNAi), a eukaryotic gene regulation and defense mechanism based on base complementarity between RNAs. dsRNAs complementary to endogenous genes reduce the levels of their transcripts and generate loss-of-function phenotypes. Insects can take dsRNAs from the environment, internalize them into cells, and distribute them systemically, making RNAi a promising pest control strategy. To produce dsRNAs, we separated the inverted repeats of the target gene that generates the hairpin with the cDNA of a group-I autocatalytic intron from Tetrahymena thermophila, increasing the stability of the expression plasmids. The intron is removed after transcription, resulting in a viroidal molecule from which the dsRNA of interest protrudes. Flanking the inverted repeats with an additional copy of the intron in a permuted form allows the ELVd molecule to be separated from the final product, a circular dsRNA molecule capped on both sides by small loops. Both molecules have regulatory activity: the viroid-dsRNA chimeras with homology to the smooth septate junction 1 gene of the corn rootworm (Diabrotica virgifera virgifera) exhibit oral insecticidal activity against larvae similar to that of in vitro synthesized hairpins, and the circular dsRNAs without the viroid scaffold homologous to the vacuolar ATPase (subunit A) and ribosomal protein S13 genes efficiently silence those genes in adult Medfly (Ceratitis capitata); this case is of special relevance as it is the first demonstration of RNAi for the control of this pest. In conclusion, despite its limited agricultural relevance, the ELVd is useful for investigating the molecular biology of the Avsunviroidae family and a powerful biotechnological tool in combination with the E. coli expression system. / This work was supported by the Ministerio de Ciencia e Innovación (Spain; co-financed by the European Regional Development Fund) [BIO2017-83184-R] and [BIO2017‐ 91865‐EXP]; Universitat Politècnica de València [PAID-01-17]. We acknowledge support of the publication fee by the CSIC Open Access Publication Support Initiative through its Unit of Information Resources for Research (URICI). / Ortolá Navarro, B. (2023). Heterologous expression of circular RNAs in Escherichia coli for analyzing the ligation process of chloroplastic viroids and producing double-stranded RNAs with insecticidal activity [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/192635