The aim of this study was to investigate various aspects of the life history of white sharks Carcharodon carcharias at Dyer Island, South Africa, between August 1999 and January 2001. Inter-specific predatory interactions between the white shark and various potential prey species such as the Cape fur seal (Arctocephalus pusillus pusillus), African penguin (Spheniscus demersus), Cape cormorant (Phalacrocorax capensis), bank cormorant (P. neglectus), crown cormorant (P. coronatus) and white-breasted cormorant. (P. carbo) were observed. White sharks were attracted daily to a research vessel positioned at various anchorages in the vicinity of Dyer Island. Spatial and temporal abundance, and population composition of white sharks were recorded throughout the year and revealed seasonal trends in habitat utilisation. White sharks occupied inshore waters, away from the Geyser Rock seal colony in the summer. Sharks became abundant in the near vicinity of Geyser Rock in the winter period. The summer inshore population was characterised by the increased total length of sharks and the exclusive presence of female sharks. Prey resembling decoys were used to investigate trends in the 'predatory motivation' of white sharks in relation to various independent variables. White sharks displayed greatest predatory motivation in close proximity to a seal colony, in overcast conditions, and when water clarity was low. White sharks evidently elevate their motivation to hunt large prey, which are difficult to catch, in situations where the likelihood of encountering valued prey and completing a successful attack is greatest. Ontogenetic difference in predatory motivation towards the decoys existed, with sharks above 325 cm TL displaying greater predatory motivation than smaller sharks. Various choice tests were conducted to determine the visual discriminatory ability and prey preference of white sharks at Dyer Island. The results suggested that white sharks preferred a biologically familiar shape (pinniped) over an inanimate shape (rectangle), smaller (75 mm TL pinniped) over larger (1800 mm TL pinniped) prey, and a pinniped decoy over a penguin decoy of similar size. Selectivity in larger white sharks (>375 cm TL) was most noticeable in the prey shape (pinniped vs. rectangle) experiment, which suggests they may readily utilise a speculative hunting strategy based on rough similarities between detected potential prey and recognised prey. In this situation mistaken identification of prey is more possible. Smaller white sharks (a majority of the sample) displayed most selectivity in the prey size experiment, with strong preference for the smaller seal decoy over the large one. This pattern indicates that prey size may be a partial limiting factor in the feeding of smaller white sharks. Negative impacts (such as conditioning or distraction) of cage-diving on white sharks were assessed by the measurement of white shark contact time and visit time in relation to the chumming vessel. These results revealed that smaller sharks had longest visit times, and that sharks in the vicinity of Geyser Rock displayed visitation patterns indicative of hunting sharks. Particular vigilance should be kept by operators not to allow small sharks to take bait (reward). The channel area appears to be an important hunting ground and white shark cage-diving should perhaps be restricted in this area. White sharks also showed greater activity around the chumming vessel on cloudy days and operators must be particularly vigilant to deny sharks any rewards (bait) under these conditions. Both the white sharks and Cape fur seals predate and/or attack seabirds and predatory interactions were quantified and qualified by the routine collection and inspection of seabird carcasses and injured birds, as well as opportunistic observations of live attacks throughout this study. White sharks are infrequent predators of seabirds in this ecosystem, perhaps due to an abundance of Cape fur seals (a preferred prey), anti¬predator behaviour by penguins, and seabirds not being a sought after prey type. Cape fur seals were a more conspicuous seabird predator, annually attacking a significant percentage of the adult penguin (1.99-2.52%), white-breasted cormorant (5.21-5.72%), and crowned cormorant (3.13%) populations. A minimum estimate of 1.09% of the fledgling Cape cormorant population also succumbed to Cape fur seal predation. / Dissertation (MSc(Zoology))--University of Pretoria, 2006. / Zoology and Entomology / unrestricted

This thesis examines the extent and intensity of the effects of impoundments on selected physical, chemical and biotic conditions in an impounded southern African river. Life-history characteristics and environmental requirements which determine the success of impoundment-outlet blackflies in southern Africa were studied. Difficulties with the identification of immature blackflies led to a search for additional diagnostic characters, the description of larvae of seven species previously unknown, and the development of new keys to the species of Simulium (larvae and pupae) in southern Africa. Distribution records for each species are presented, and their ecology is summarised. Three pairs of closely related species, which were formerly indistinguishable, can now be recognised by differences between the structure of their cephalic fan microtrichia. Monthly physical, chemical and invertebrate samples at 16 sites upstream and downstream of four impoundments in the Buffalo River, eastern Cape, were taken over a period of two years. The downstream effects of impoundments on these parameters depended on the variable examined, the position of the impoundment along the river profile, the depth from which water was released, and the quality of the inflowing water. Impoundments in the Buffalo River caused an upstream shift of the thermal and suspended organic conditions, and the distribution of blackfly species. Surface-release impoundments in the clean, upper-reaches of the river caused increases in water temperature (by as much as 8ºC) and chlorophyll a (by as much as 600%). Recovery to riverine conditions was within 2.6 to 18.4 km, depending on flow. A polluted, surface-release impoundment in the middle-reaches of the river had a slight dampening effect on river temperatures, converted the particle size spectrum of the river from small (<80 μm) to large (250-1000 μm), and improved the water quality of the downstream reaches (with the exception of nitrate concentrations, which were higher in the tailwaters compared to inflowing water). An impoundment in the lower reaches caused reductions in maximum temperature of up to 6ºC when releasing water from the surface, and up to 16ºC when releasing water from the bottom. Bottom-released water carried high concentrations (36 to 190 g m³) of small (<5 μm) and largely inorganic (86 to 93%) material.Twenty species of blackflies were found in the Buffalo River, of which 18 were distinguishable as larvae. They were divided into those which were widespread (5 taxa), those restricted to waterfalls and mountain torrents (2 taxa), those found in the foothill stony run zone (6 taxa), and rare taxa (5 taxa). Impoundments in the Buffalo River did not alter population densities of blackfly larvae, but did alter blackfly species composition, favouring five species commonly found in mid-order streams in southern Africa (s. meduseaforme, S. hargreavesi, S. nigritarse, S. adersi and s. damnosum s.l.) at the expense of upper-reach species (s. rutherfoordi, S. letabum and s. impukane). These five species are regarded as typical of impoundment-outlets, and were small, multivoltine flies whose larvae shared a generalised cephalic fan microtrichial structure, consisting of a single row of moderately differentiated microtrichia. A strong relation was found between cephalic fan microtrichial structure and larval habitats: Taxa found in fast-flowing, clear water had a more complex fan structure compared to those found in slow-flowing, turbid water. It is concluded that impoundment-induced changes to hydrodynamics and transported material (food) are important factors which have changed the distribution of blackflies in southern Africa in recent times. These changes are more severe downstream of upper-reach impoundments than middle or lower-reach impoundments.

Introduction. On the coast of the Bathurst Division, Eastern Cape Province, some 42 miles south- east of Grahamstown, lie two estuaries opening within a few yards of one another. These are known as the Kleinemonde. This paper embodies the results of an ecological survey of the fauna of the Larger Kleinmond Estuary. The chief concern has been the aquatic fauna but animals living along the banks have also been dealt with as far as possible, as have the birds. This is the second of South Africa's blind estuaries to be studied, the Klein River, Hermanus, having been investigated in 1947-49 by workers from the University of Cape Town. Though common in South Africa, blind estuaries are rare in parts of the world such as Europe, and present an almost entirely new field of research for the ecologist. It is hoped, therefore, that the investigation of the Kleinmond Estuary and a comparison with the results obtained from the Klein River, Hermanus, will add to our knowledge of this subject and be of service to future investigators. The history of the Kleimnond River is worthy of mention, for the lagoon was not always blind and shallow. The early maps of the 1820 settlers show the river as a navigable stream; sailing vessels anchored out at sea and sent lighters up what was then known as the Lydendoch River to collect fresh meat. The area at the mouth of the river was called Port Jessie. In these early days the region abounded with game. Hippo and elephant were common. the former inhabiting deep pools in the upper reaches of the river; pools which have since completely silted up. Constant ploughing of the slopes adjoining the river has caused vast amounts of soil to be washed by rains into the stream, and today what was within living memory a deep, clear stream is a shallow, blind and muddy river, a reflection of man's destructive methods of farming. These changes must have had a far-reaching effect on the fauna of the estuary; an effect about which we can, alas, only speculate. It is perhaps significant that though rich in numbers, the fauna is poor in species, tunicates and echinoderms being apparently entirely absent. The work involved in this survey was undertaken between September 1952 and November 1953, under the direction of Professor J . Omer-Cooper of Rhodes University, frequent and regular visits being made to the estuary. The entire month of February, 1953, was spent on the shore of the lagoon, so that animals could be observed over a continuous period. The starting date of the survey was particularly fortunate, as on September 28th, 1952, the river came down in flood and broke through the sand-bar separating the lagoon from the sea. The work thus began at a definite point in the estuarine cycle, the importance of which it is hoped to show.

Aspects of the life history of Myxus capensis which were likely to be most affected by man-induced habitat changes, were studied in the eastern Cape. Myxus capensis was found to be specialized for a catadromous life history. The fry migrate into freshwater reaches of rivers within a few months of being spawned at sea and return to an estuarine or marine environment when maximum size has been attained and large energy reserves necessary for spawning have been accumulated. Myxus capensis penetrates considerable distances up eastern Cape rivers and although present in the upper reaches of some estuaries, is only common in freshwater-dominated systems. Myxus capensis has adapted its life history style in a number of ways to overcome the constraints associated with the spatial separation of the freshwater feeding areas and the marine spawning grounds in a region prone to droughts and erratic river flow. Research on the more estuarine-dependent Mugil cephalus, which is also found in the freshwater reaches of eastern Cape rivers, enabled useful comparisons to be drawn. As the latter species is not dependent on a freshwater phase in its life cycle, it is subject to different selection pressures. This comparative approach gave insights into the adaptive significance of the life history tactics of Myxus capensis. Myxus capensis displays a number of life history tactics characteristic of migratory fish species which are thought to increase population fecundity by increasing the number of large females and hence maximizing egg production. These include a sex ratio in favour of females, faster female growth, females remaining longer in the freshwater feeding areas and reaching a larger ultimate size. Possible adaptations to the periodic isolation of the feeding and spawning areas include: (i) the development of ripe gonads only in estuarine or marine areas when access to the spawning grounds is ensured; (ii) year-round spawning and hence recruitment which enables the erratic floods to be used at any time for downriver spawning migrations and reduces the chances of total recruitment failure due to short-term adverse environmental conditions and (iii) a relatively wide range of size and age at first (and final) sexual maturity (2+ to 5+ years); this tends to ensure successful reproduction and recruitment in spite of a series of poor years, as well as dampen population fluctuations after long periods of isolation in fresh water. The dependence of Myxus capensis on the freshwater reaches of eastern Cape rivers makes this species vulnerable to man-induced habitat changes. The erection of barriers to migration has cut off large stretches of suitable habitat and almost completely eliminated Myxus capensis from certain rivers. This detrimental effect has been largely responsible for the recent inclusion of this species on the Red Data list of endangered fish species in South Africa. This study demonstrated the considerable fisheries potential of both mullet species and this should ensure that their conservation and wise utilization be given high priority. Management proposals include: (i) the netting and lifting of Myxus capensis over barriers to migration; (ii) the construction of fish ladders when feasible and (iii) the artificial propagation of this species to enable large-scale stockings of existing man-made impoundments as well as natural habitats to be carried out. It is predicted that the life history characteristics of Myxus capensis, which evolved in response to an erratic freshwater environment, should ensure that when man-induced habitat changes are rectified, this species will again flourish in eastern Cape rivers.

Globally the failure of traditional fisheries management approaches is evident through the increasing number of overexploited or depleted marine stocks. Past sectoral management has failed to address cumulative impacts of fisheries activities on ecosystem health. Ecosystem based approaches have been advocated as a viable alternative for sustainable management of marine ecosystems as they present a holistic and precautionary approach, which integrates management of multiple activities with that of maintaining ecological health. Although conceptually advanced, implementation has been poor due to the complexities of competing ecological and socio-economic management objectives. Marine spatial planning can facilitate the implementation of ecosystem based management as it is able to address the spatial heterogeneity of biological communities and anthropogenic activities. Ecosystem based management approaches aim to address the full range of anthropogenic drivers on the marine environment, including but not limited to fisheries, tourism, coastal development, and land and marine based pollution sources amongst others. Fisheries activities have a direct impact on the local marine environment and were therefore the focus of this study which forms a starting point for implementing ecosystem based management in Algoa Bay. It is envisaged that future research will build on this foundation and include additional anthropogenic drivers into the management and monitoring strategies developed in this study in order to achieve a truly holistic ecosystem approach to management in Algoa Bay. Algoa Bay is situated centrally within the warm-temperate Agulhas bioregion along the east coast of South Africa and is the largest and best formed logarithmic spiral bay along this section of coastline. A large city, two commercial ports and several coastal settlements are located within Algoa Bay and a wide range of marine based activities occur within the area. A large section of the coastline is proclaimed as a National Park yet only two small offshore marine areas are formally protected. The development of a large marine protected area (MPA) adjoining the terrestrial section was proposed in the mid-1990s but a lack of adequate spatial data with which to quantify the fishery costs and conservation benefits led to wide scale public opposition and halted the declaration process. The primary goal of this study was to obtain and analyse baseline data to understand spatial and temporal trends in the distribution and abundance of fish populations and fisheries activities in order to develop a spatial framework for marine conservation and management in a data limited situation using Algoa Bay, South Africa as a case study. Furthermore, it aims to contribute to the development of a monitoring framework to evaluate the success of implementation and the resultant changes in biological and socio-economic environments. This information will be used to re-initiate the stakeholder engagement process in the future.

Early stage fishes, namely larvae and early juveniles, were collected from 12 estuaries and associated habitats in the warm temperate region of South Africa between July 1998 and December 2000. This study served to provide new information and expand on existing knowledge of early stage fish assemblages associated with various types of Eastern Cape estuaries. A total of 65 536 predominantly postflexion fish larvae were collected. Together with early juveniles, taxa comprised 72 species from 25 teleost fish families. Surf zones associated with two intermittently open estuaries showed that estuary-dependent marine species predominated in this zone. Early stage fishes responded positively during natural estuary opening events and concentrated along the estuary outflow plume, suggesting that cueing from estuary and/or river water may be taking place. A habitat study in the Swartkops Estuary, using light traps, showed that newly recruited larval fishes concentrated along the margins of the estuary and unlike their older juvenile counterparts, were poorly represented in eelgrass beds. A multi-estuary comparison, including seven permanently open and five intermittently open estuaries, indicated that early stage fish assemblages were more diverse than indicated by past investigations. Early stage fishes were also shown to concentrate in the mesohaline regions of these estuaries. Studies of estuaries with altered freshwater flow regimes were also included in the research. A regulated release of dam water in the euhaline Kromme Estuary failed to induce a cueing response from estuary-dependent marine fish larvae. This project showed that large amounts of freshwater are required to reverse the negative effects of river impoundments. The release study did show that estuary-resident fishes were sensitive to small natural pulses of freshwater and responded by spawning. However, excessive river supply through an inter-basin water transfer scheme was shown to have a flushing effect on the larvae and early juveniles of the estuary-resident Gilchristella aestuaria in the upper reaches of the Great Fish Estuary. This effect was evident in comparisons with the freshwater starved Kariega Estuary where concentrations of G. aestuaria, a species usually more abundant in freshwater rich estuaries, were considerably higher. This finding suggests that freshwater minima and maxima be considered when assessing and managing estuarine systems.

Fishways are devices that are increasingly being used worldwide to assist aquatic biofauna to migrate through man-made barriers such as weirs and large-scale dams that are used for water storage, electricity generation etc. and have a negative impact on both the upstream and downstream movement of aquatic organisms. Fishways are usually low gradient channels with evenly placed chambers which allow such migrating aquatic species minimal stress on their passage over these barriers. Despite the existence of national and regional policies for their provision, their construction has often been inhibited through a lack of local assessment of the available designs, and use of ineffective international designs. As part of a larger national research programme, sponsored by the Water Research Commission, to develop a protocol for fishway design and implementation, this study sought to investigate the suitability of vertical slot and sloping baffle designs to assist the migrations of juvenile catadromic fish species in the ebb and flow region of rivers in the Eastern Cape, South Africa. These fishways were initially tested under controlled conditions at the Experimental Fish Farm at the Department of Ichthyology and Fisheries Science, Rhodes University using various fish species. Using the performance data thus collected they were then installed and monitored in the field for the catadromic Myxus capensis (freshwater mullet) and Monodactylus falciformis (cape moony) migrations during March and November of 2005 at the Kowie River ebb and flow weir. The laboratory tests showed that there was a significantly higher level of migration success in the vertical slot compared with the sloping baffle fishway under all conditions (F=82.157; p<0.001). There was, however, a slow decline in levels of success with increased discharge in the vertical slot fishway. This was in contrast to the sloping baffle design where success increased as discharge increased at a steep gradient (F=74.894; p<0.005). The level of success with the M. capensis was related to the size of the fish for both systems with success increasing from the small to the large fish (F=17.755; p<0.001). For the M. falciformis higher levels of success were found to occur in the vertical slot fishway compared to the sloping baffle fishway (F=11.792; p<0.00086), with no significant differences being found with an increase in discharge. Field data indicated similar trends with higher migration success using the vertical slot fishway. M. capensis were better able to negotiate both devices compared to the M. falciformis and overall levels of success were higher for both species in the field than under laboratory conditions where the migration urge may have declined.

The annual biomass of fish caught from estuaries in South Africa is currently estimated at over 24,800 tons. These estuarine fishes are caught by over 73,000 fishers, most of them recreational. Annual income derived from South Africa’s total estuarine fishery was worth approximately R430,000,000 in 1997. There is increasing concern that unless our estuarine fisheries are effectively managed, we will not be able to sustain these benefits into the future. Two factors that contribute to inadequate management of the estuarine fisheries in South Africa are a lack of data on which to base management decisions, and the lack of indicators by which to assess trends towards sustainability. The main aims of this study were to provide a description of the Kowie estuary fishery, identify suitable indicators of sustainability for this fishery, and assess its sustainability. Boat-based and shore-based roving creel surveys were carried out on the Kowie estuary between July 2000 and June 2001; 1,091 interviews were conducted with linefishers, and 277 interviews with bait collectors. In the boat-based interviews, data were collected on fisher demographics, fishing site, fishing method, choice of bait, fishing duration and catch statistics. In the shore-based surveys, additional data were collected from shore-based linefishers and bait collectors on their perceptions, attitudes, and knowledge of fishery regulations. Total annual fishing effort on the Kowie estuary was estimated at 30,952 angler hours (SD=154); 84% of it recreational, and the rest subsistence. Most fishing occurred during December and January, and decreased during winter, especially June and July. The annual yield of fish from the estuary was estimated at 16,240 fish (SD=667) or 5.99 tons (SD=0.81). By number, recreational anglers caught 69% of the annual catch. Three species dominated the catch by number: Rhabdosargus holubi (62%), Pomadasys commersonnii (17%) and Argyrosomus japonicus (7%). By mass, the dominant species caught were Argyrosomus japonicus (60%) and Pomadasys commersonnii (19%). Overall catch rate on the estuary was 0.57 fish.ang.⁻¹h⁻¹ (SD=0.24), or 0.298 kg ang.⁻¹h⁻¹ (SD=0.31). Overall catch rate by number was highest in the subsistence sector at 1.13 fish.ang.⁻¹h⁻¹(SD=0.70), while the boat-based recreational sector recorded the highest overall catch rate by mass (0.427 kg.ang.⁻¹h⁻¹, SD=0.625). Argyrosomus japonicus had the highest overall catch rate by mass on the estuary (0.496 kg ang.⁻¹h⁻¹), and Rhabdosargus holubi the highest overall catch rate by number (1.233 fish.ang.⁻¹h⁻¹). Only 19% of the catch of R. holubi was above the minimum legal size, while the estimates for P. commersonnii and A. japonicus were 21% and 25%, respectively. The annual number of bait collecting outings on the estuary was estimated at 2,889, of which 75% were subsistence. The highest numbers of bait collecting outings were recorded in December and April. The Bay of Biscay was the most popular site for bait collecting. A total of five invertebrate species were collected from the estuary to be used as bait, of which the mud prawn Upogebia africana was the dominant species. Total annual number of mud prawns collected from the estuary was estimated at 260,648; of which 41% was collected by subsistence bait collectors. Thirteen indicators were selected to assess sustainability in three fishery sectors on the Kowie estuary: namely, the shore-based recreational linefishery, the subsistence linefishery and the subsistence bait fishery. Social sustainability was evaluated on the basis of the use fishery resources to fulfil Maslow's basic human needs of food and employment, safety and security, affiliation, self-esteem and selfactualisation. Indicators of ecosystem sustainability assessed the productivity, diversity, disturbance and degree of water quality in the estuary. Institutional sustainability was assessed on the basis that management systems in the fishery should be results-oriented, consent-based, truth-seeking and adaptable. Data on indicator performance was collected during the shore-based roving creel survey, and from published literature. Arbitrarily set reference points were used to assess indicator performance, which was graded on a scale from 1 (indicating minimum probability of sustainability) to 4 (indicating maximum probability of sustainability). Sustainability was illustrated with the aid of amoeba plots. Overall sustainability was low in all three fishery sectors investigated. Nine of the 13 indicators in the shore-based recreational fishery performed poorly, while 11 of 13 in the subsistence line fishery, and 10 of 13 in the subsistence bait fishery, performed poorly. In all three fishery sectors all four selected indicators of institutional sustainability performed poorly. The probability of social sustainability was higher in the shore-based recreational line fishery, where the performance of two of the five selected indicators was very good. The probability of ecological sustainability was lowest in the shore-based recreational linefishery, while in the subsistence linefishery only one selected indicator performed very well. Recommendations made towards assessing sustainability in small-scale estuarine fisheries include the formulation of national policy for assessing sustainability in fisheries, the involvement of fishers in the assessment process, use of fisher perceptions where data gaps exist, and the use of research results to guide future management decisions. Management changes recommended for the Kowie estuary fishery include the formulation of an effective and integrated management plan, identification of the key stakeholders in the fishery, inclusion of fishers in management, the protection of the estuary’s Zostera capensis beds, and the establishment of a programme to increase research and monitoring in the fishery.

The Nelson Mandela Bay Municipality (NMBM) is a semi-arid area along the southern coastline of South Africa (SA). Until recently, there was no systematic approach to research on wetland systems in the NMBM. The systematic identification of wetlands was made more difficult by the relatively large number of small, ephemeral systems that can be difficult to delineate. This has meant that fundamental knowledge on wetland distribution, structure and function has been limited and, consequently, management and conservation strategies have been based on knowledge on systems from other regions of the country. Environmental processes occur at different spatial and temporal scales. These processes have an effect on the abiotic factors and biotic structure of wetlands, resulting in inherently complex systems. The location of the NMBM provides a good study area to research some of these environmental and biological attributes at different spatial scales, due to the variability in the underlying geology, geomorphology, vegetation types and the spatial and temporal variability in rainfall, within a relatively small area of 1951 km2. Thus, the aim of this study was to determine the factors influencing wetland distribution, structure and ecosystem functioning within the NMBM. The first Research Objective of work presented here was to identify wetlands using visual interpretation of aerial photographs. A total of 1712 wetlands were identified within the NMBM using aerial photographs, covering an area of 17.88 km2 (Chapter 5). The majority of these wetlands were depressions, seeps and wetland flats. Valley bottom wetlands (channelled and unchannelled) and floodplain wetlands were also identified. A range of wetland sizes was recorded, with 86% of the wetlands being less than 1 ha in size and the largest natural wetland being a floodplain wetland of 57 ha, located south of the Swartkops River. The identified wetlands were used to create a wetland occurrence model using logistic regression (LR) techniques (Chapter 5), in accordance with Objective 2 of the study. An accuracy of 66% was obtained, which was considered acceptable for a semi-arid climate with a relatively high degree of spatial and temporal rainfall variability. The model also highlighted several key environmental variables that are associated with wetland occurrence and distribution at various spatial scales. Some of the important variables included precipitation, evapotranspiration, temperature, flow accumulation and groundwater occurrence. Wetland distribution patterns were described in Chapter 6. Spatial statistics were used to identify whether wetlands are clustered and, therefore, form mosaics within the surrounding landscape (Objective 3). Systems were found to be highly clustered, with 43% of wetlands located within 200 m of another system. Clustering and wetland presence was especially prominent in the southern portion of the Municipality, which is also associated with a higher mean annual precipitation. Smaller wetlands were also significantly more clustered than larger systems (Average Nearest Neighbour statistic, p-value < 0.0001). Average distances also significantly varied according to HGM type, with depressions being the most geographically isolated wetland type compared to the other HGM types. Overall, distances between wetlands indicated good proximal connectivity. Potentially vulnerable areas associated with wetland systems were identified successfully using landscape variables, in accordance with Objective 4. These variables were: land cover, slope gradient, flow accumulation, APAN evaporation, mean annual precipitation (MAP) and annual heat units. The existing Critical Biodiversity Network was also used in connection with these variables to further identify potentially vulnerable areas. The abiotic and biotic characteristics were decribed for three hydrogeomorphic (HGM) types at a total of 46 wetland sites (Chapter 7), as per Objective 5. Depressions, seeps and wetland flats were sampled across the different geological, vegetation and rainfall zones within the NMBM. The wetland sites were delineated up to Level 6 of the Classification System used in SA, and the various abiotic and biotic characteristics of these systems were defined. A total of 307 plant, 144 aquatic macroinvertebrate and 10 tadpole species were identified. Of these species, over 90 species were Eastern Cape and SA endemic species, as well as three threatened species on the IUCN Red List. Multivariate analyses (including Bray-Curtis similarity resemblance analyses, distance-based redundancy analyses, SIMPER analyses and BIOENV analysis in Primer), together with environmental data, were used to define community structure at an HGM level, in accordance with Objective 5. The importance of the spatial scale of the environmental data used to define plant and macroinvertebrate community structure was described in Chapter 7, to address Objective 6. The results showed that both broad-scale and site-level characteristics were important in distinguishing community structure within the HGM types that superseded general location, the sample timing or the stage of inundation. These results also indicated that a combination of both landscape and site-level data are important in defining the community structure in the various HGM types. Some of the important environmental variables that explained some of species assemblages were similar to those in the wetland occurrence model (Chapter 5), with some additional hydrological and soil physico-chemical parameters (e.g. soil electrical conductivity, soil pH, and surface and subsurface water nutrients). These significant variables indicate the complex, multi-scalar role of environmental attributes on wetland distribution, structure and function.

Many of the larger estuaries along the South African coastline are highly degraded due to human impacts, highlighting the need to conserve pristine systems. There are approximately 100 micro-estuaries along our coastline which have not yet been identified or classified and hence their ecological functioning is unknown. The aim of this study was to identify and classify micro-estuaries along the Eastern Cape coast. Specific objectives of the study were to: 1) map the distribution of estuarine habitats in a selection of micro-estuaries and assess changes over time; 2) measure the physico-chemical characteristics of the micro-estuaries in the field; 3) investigate the distribution of vegetation, identify macrophyte species and habitat integrity and classify the micro-estuaries sampled using abiotic and botanical characteristics. A total of 30 systems were identified of which 10 were selected for sampling which took place seasonally (2015-2016). A relationship between open water surface area and short term rainfall was only evident in Cunge, Sandy Bottom and Ichabana. In the field it was observed that after heavy rainfall, open water surface area increased and mouth breaching occurred. Salinity was the only water column characteristic that showed differences; salinity increased in response to over wash events. Sand was dominant in all systems and there were no differences in sediment characteristics. A total of 8 macroalgal species, 16 estuarine macrophyte species, six freshwater species and 72 riparian plant species were found. Seed bank reserves were low in all systems despite them being vegetated. Only abiotic characteristics were used for classification using Principle Components Analysis since there were no botanical differences between systems. Micro-estuaries were larger (> 0.03 ha), had a higher salinity (oligohaline, mesohaline and polyhaline conditions) and a constant water body. Micro-outlets were smaller (< 0.03 ha), had a lower salinity (oligohaline conditions were most common) and showed periods of drying. Five micro-estuaries (Shelbertsstroom, Kwesani, Cunge, Mtwendwe and Mtendwe) and five micro-outlets (Stromatolite, Sandy Bottom, Ichabana, Palm Tree and Black Rock) were classified. This study has shown that the micro-estuaries along the Eastern Cape coast are pristine (i.e. intact riparian zone and catchment), untouched and highly dynamic systems (i.e. great variation in water surface area and mouth condition) highlighting their need for protection.