19th IEEE International Conference on Computational Science and Engineering (CSE 2016), is the event, in a series of highly successful International Conferences on Computational Science and Engineering, held mainly as the International Workshop on High Performance Scientific and Engineering Computing for 11 editions. August 24-26, 2016 - Paris, France / Currently multimedia contents dominate the information exchanged in Internet, particularly through social networks. Each actor on the Internet becomes producer and consumer of contents. Nevertheless, social network and other traditional collaborative environments present limitations regarding content selection, categorization, aggregation, linking and interoperability, and usage control and privacy. In [1], we proposed the architecture (based on a peer-to-peer infrastructure and Semantic Web) of a MultiMedia Digital EcoSystem (MMDES), as a new environment for collaboration and sharing of multimedia resources, multimedia processings, as well as for computing and storage capabilities. In this paper, we describe MMDES framework and functionalities related to managing the collective knowledge and equilibrium in MMDES. We also describe the implementation of MMDES using a mobile platform in order to provide resources’ sharing for the Archivo Nacional de Arte Rupestre (ANAR) in Venezuela

A crucial question in the debate about reintroducing elephant culling is whether the long-term effects of elephants and mesobrowsers on woodlands are similar. Sufficiently high biomass-densities of mesobrowsers may, following reduction or removal of elephants, continue to heavily impact earlier life-history stages of a similar suite of woody plants that elephant impacted, preventing these species from maturing. Thus a similar end-point for woodland structure and composition is achieved. No study exists in the literature where woody plant and habitat utilisation of the savanna browser guild has been determined in the same locality over the same period. A review of 49 years of literature implied that the two groups impact the same core woody-species in the same habitats. Dietary and habitat utilisation of guild members was determined in Hluhluwe-iMfolozi Park, South Africa. A small suite (n = 8) of woody species formed the core diet of all guild members. Herbivores’ densities were determined using a novel GIS approach; all members of the guild showed extensive overlap in habitat use. GPS collars and a GIS were then used to detect zones of different density of impala in the landscape, thus defining, for the first time, a natural fine-grain browsing gradient. Densities of woody seedlings were significantly less (average 48% reduction) in areas of high versus low impala density. A simple browse-browser model, incorporating, in a novel approach, functional groups of plant species, was parameterised from these results and an extensive review of the literature. Outputs suggest that over the long-term (100 years), impala will have a similar impact on woodland structure as elephant. An apparently strong synergistic effect between impala and elephant impact, suggests that reduction or removal of either impala or elephant will radically reduce long-term destruction of woodlands. In smaller or medium sized reserves, where control of mesobrowser populations is practical, profitable and more acceptable than elephant culling, these findings imply a re-direction of management efforts. Management should consider the biomass-density of both groups, rather than just focus on the system’s perceived ‘keystone’ species. Such principles may also apply to temperate and other systems.

Annual energy flow and mean annual biocontent of eighteen compartments were determined for a 0.94 ha north central Texas pond ecosystem. Annual primary production was 7,780 kcal m^-2 yr^-2, and community production-to-respiration ratio was 1.49. One-third of annual primary production accumulated on the substrate as silt and sedimentation. Community production, production-respiration ratio, and biocontents of all compartments except aquatic insects were large in summer, small in winter. Biocontents of four trophic levels in the pond were all of the same order of magnitude, approximately 50 kcal m^-2. Suspended and benthic organic material forprimary consumers and terrestrial insects for tertiary consumers were substantial allochthanous energy imports into the pond system.

Urbanization is seen as a threat to biodiversity within urban ecosystems, which are largely reliant on humans for their composition. Two types of extremes exist in the spectrum of urban domestic gardens; on one end, the typical urban garden which is planted by landscapers at the time the house is built and is generally left unchanged, and, at the other, a "wild" landscape planted entirely with native plants which provides habitat for native fauna and pollinators. This study assesses the plant choices made by members of organized gardening groups-the Denton County Master Gardeners (DCMG), the Elm Fork Master Naturalists (EFMN), the Trinity Forks Native Plant Society (TFNPS), and Keep Denton Beautiful (KDB)-and toward which extreme these choices put these gardens on the psectrum. TFNPS and EFMN both fall closer to the wild garden extreme, with TFNPS the closest to a "wild garden." DCMG was almost directly between the two extremes, but fell closer to the typical urban garden. By looking at how these groups manage their gardens, we begin to understand the ways in which gardeners can mitigate and soften the harsh changes between wild landscapes and urban environments. Collaboration between groups could have the potential to encourage more people to use native plants which provide habitat for native fauna and pollinators if those in the typical urban garden spectrum could find in the "wild" gardens of those on the opposite end of the spectrum.

This dissertation includes 3 chapters which focus on algal bloom of the tidal fresh James River. The first chapter describes nutrient and light limitation assays performed on algal cultures and draw conclusions about long-term patterns in nutrient limitation by comparing results with a previous study . This chapter also describes the influence of riverine discharge upon nutrient limitation in a point-source dominated estuary. This chapter was published in Estuaries and Coasts (Wood and Bukaveckas 2014). The second chapter presents the first comprehensive assessment of the occurrence of the cyanotoxin Microcystin in water and biota of the James River. Data presented in this chapter show that bivalve grazing declines in the presence of Microcystin in the water. The chapter also describes feeding habits in fish as a predictor for inter-specific differences in Microcystin accumulation in their tissues. The work presented in this chapter was published in Environmental Science & Technology (Wood et al. 2014). The third chapter describes the fate of algal carbon in the James River Estuary and the importance of autochthonous and allochthonous sources of organic matter in supporting production of higher trophic levels. Here I draw upon ecosystem metabolism data (NPP and R), abundance and grazing estimates for primary consumers and estimates of advective losses of chlorophyll and external inputs of nitrogen to place ‘top-down’ effects in the broader context of factors influencing chlorophyll and nitrogen fluxes in the James. . This chapter also describes results from mesocosm experiments used to assess the influences of grazers on chlorophyll, nutrients and Microcystis. This work will be submitted in the summer of 2014 to the journal Ecosystems.

It is important to understand mechanisms that facilitate expansion of two common shrubs, Morella cerifera and Baccharis halimifolia in coastal environments. The purpose of my study was to investigate the physiological and structural changes that occur as leaves age. Photosynthesis, incident light, chlorophyll, and leaf C:N ratios were quantified for young, intermediate, and old leaves (distal, central and proximal leaves, respectively). Leaf structural differences were also compared. Leaves did not change morphologically with age. Light decreased with leaf age and during winter months. Photosynthesis showed no seasonal or age related patterns. Chlorophyll increased initially and then declined with age due to self shading. Nitrogen content was highest during spring. Seasonality and leaf age had unique effects on the two study species. Understanding senescence adaptations of these two shrubs can help explain their abundance in coastal ecosystems.

In order to predict how terrestrial ecosystems will respond to global change, there is growing recognition that we need to better understand linkages between plant and soil processes. Previously the factors and processes with potential to influence the terrestrial carbon (C) cycle have been investigated in isolation from each other. This study investigated the interactions of nutrient availability and warming in controlling the soil carbon dynamics, with regards to the fate of already sequestered carbon in soil, under conditions of increasing atmospheric temperatures. The project objectives were addressed by three independent experiments designed to explain specific components of the carbon-nutrient cycle interactions, and the findings brought together to describe the implications for future soil carbon storage. The main measurements collected throughout this project included soil carbon dioxide (CO2) fluxes, partitioned into autotrophic and heterotrophic components, net ecosystem exchange and respiration fluxes, and background soil moisture and temperature data, backed by gas, soil and biomass analyses. In the two field experiments, these measurements were taken from plots with or without any inorganic nutrient additions or in the presence or absence of legumes providing biological nitrogen addition to the ecosystem. In the laboratory, temperature and nutrient availability were manipulated within the ecosystem. The reduction in decomposition rates, without reduction of productivity as a result of inorganic nutrient additions, indicated the potential for increasing C storage. There was also evidence that nutrient availability controls the strength of the link between plant and soil processes in semi-natural grasslands. The yields, decomposition rates and soil C fluxes recorded in the presence and absence of legumes provided some evidence of N2 fixation, improving ecosystem productivity and soil properties while reducing soil C effluxes, in a managed grassland. In the laboratory, the warming of soils from lysimeters with and without plants, receiving or not receiving fertiliser, supported the findings from field experiments regarding the importance of the soil-plant link in controlling C fluxes. However, C stocks and δ13C analyses showed that over a year’s worth of warming and nutrient manipulations made little difference to the amount of C stored in the soil, indicating that edaphic factors have greater control over the response of C dynamics to increased temperatures.

Nutrient inputs into the environment greatly impact urban ecosystems. Appropriate management strategies are needed to limit eutrophication of surface water bodies and contamination of groundwater. In many existing urban environments, retrofits or complete upgrades are needed for stormwater and/or wastewater infrastructure to manage nutrients. However, sustainable urban nutrient management requires comprehensive baseline data that is often not available. A Framework for Urban Nutrient (FUN) Management for Geographic Information Systems (GIS) was developed to specifically address those areas with limited data access. Using spatial analysis in GIS, it links water quality, land use, and socio-demographics, thereby reducing data collection and field-based surveying efforts. It also presents preliminary results in a visually accessible format, potentially improving how data is shared and discussed amongst diverse stakeholders. This framework was applied to two case studies, one in Orange County Florida and one in Placencia, Belize. A stormwater pond index (SPI) was developed to evaluate 961 residential wet ponds in Orange County, Florida where data was available for land use and socio-demographic parameters, but limited for water quality. The SPI consisted of three categories (recreation, aesthetics, education) with a total of 13 indicators and provided a way to score the cultural and ecosystem services of 41 ponds based on available data. Using only three indicators (presence of a fence, Dissolved Oxygen (DO) < 4 mg/l, and water depth < 3 ft), 371 out of 961 stormwater ponds were assessed. Additional criteria based on socio-demographic information (distance to a school, population density, median household income under $50,000, percentage of population below the poverty line, and distance to parks) identified seven wet ponds as optimum for potential intervention to benefit residents and urban nutrient management purposes. For the second case study, a water quality analysis and impact assessment was performed for the Placencia peninsula and lagoon in Belize. This study had access to water quality data, but limited land use data and very limited socio-demographic data. Since May 2014, water quality samples have been taken from 56 locations and analyzed monthly. For this study, Dissolved Oxygen (DO), Nitrate (NO3--N), Ammonia (NH3), Chemical Oxygen Demand (COD), and 5-Day Biochemical Oxygen Demand (BOD5), Escherichia coli (E. coli), and Enterococci were selected to assess spatial and temporal variation of water quality in the groundwater on the peninsula as well as the surface water in lagoon, estuaries and along the coast. A spline interpolation of DO, Nitrate, BOD5, and COD for June 2016 indicated the concentration distribution of those parameters and areas of special concern. A spatial analysis was conducted that showed that Nitrate and Enterococci exceeded the effluent limits of Belize very frequently in the complete study area while the other parameters contributed to the identification of key areas of concern. As a high variability of concentrations over time was observed, a temporal analysis was conducted identifying a link between the water quality data and two temporal impact factors, rainfall and tourism. The two case studies showed the broad and flexible application of the FUN management for GIS and the great advantages the use of GIS offers to reduce costs and resources use.

Les changements climatiques et socio-économiques dans la région méditerranéenne constituent une menace importante pour les écosystèmes forestiers en affectant leur fonctionnement direct (augmentation de la sècheresse) et le régime des perturbations (incendies). Les interactions entre végétation, sécheresse, régime des feux et activités anthropiques ont été étudiées à l'échelle régionale sur la région Languedoc-Roussillon (LR) à partir des observations durant les dernières décennies (1971-2006) et de scénarios climatiques pour la fin du 21ième siècle (2071-2100). Les résultats montrent que l'évolution récente du climat dans la région LR est caractérisée par une augmentation des conditions de sècheresse présentant une variabilité spatiale importante. Ces tendances climatiques ont entrainé des modifications des caractéristiques de la période de sècheresse des écosystèmes (augmentation de l'intensité, décalage de la saisonnalité). Malgré cette augmentation des conditions favorables à l'occurrence et au développement des incendies, un nouvelle politique de suppression des incendies initié en 1987 a entrainé une diminution du nombre de départs de feux et des surfaces brulées. Cette politique a également modifié les facteurs explicatifs du développement des feux qui, auparavant majoritairement contrôlés par l'état hydrique de la végétation, sont désormais déterminés par la cooccurrence de la sècheresse et d'épisodes venteux. D'autre part, nos résultats ont pu quantifier la contribution relative des caractéristiques spatiales des activités humaines (densité des infrastructures, interface habitat forêt), de la végétation (composition, continuité) et des conditions météorologiques sur la distribution spatiale des incendies. Ainsi, les prédictions de l'évolution du régime des feux sur le siècle prochain sont fortement dépendantes des futures trajectoires de l'activité anthropique, des stratégies d'occupation du territoire mais également de l'incertitude liée à la régionalisation des modèles climatiques. / Climate and socio-economic changes in the Mediterranean region are expected to affect the functioning of forested ecosystems (increased drought) and the disturbance regime (wildfire). The interactions between vegetation, drought, fire regime and human activities were studied at regional scale in the Languedoc-Roussillon region (LR; Southern France) from observations over recent decades (1971-2006) and climate scenarios for the end of the 21st century (2071-2100). Recent climate changes in the LR region are characterized by an increase in drought conditions with a high spatial variability. These climate changes modified the features of the major drought period in forested ecosystems (increasing intensity, shifting seasonality). However, despite this increase in fire prone conditions, a new policy of fire suppression started in 1987 led to a decrease in the number of fire starts and burnt areas in LR region. This policy also changed the relative contribution of factors explaining fire spread, which previously mainly controlled by the water status of vegetation, are now determined by the co-occurrence of drought and windy events. Furthermore, our results could quantify the relative contribution of the spatial patterns of human activities (infrastructure density, forest habitat interface), vegetation (composition, fuel continuity) and weather on the regional distribution of fires. Thus, predictions on the future fire regime in the region should be mainly controlled by changes in human activities and settlements, as well as climate forecasts and their related uncertainty in downscaling methods, which have a significant impact on predictions of drought of forested ecosystems.

Dans les écosystèmes aquatiques, l'activité anthropique, mais aussi le contexte naturel induisent chez les organismes aquatiques des situations de stress multiples. Parmi les sources potentielles de perturbation, trois d'entre elles, d’origine chimique, ont été étudiées : contamination métallique, une contamination par un herbicide, par un mélange d’alkylphénols polyéthoxylés et enfin une contamination par un produit pétrolier. Cette démarche entre dans le cadre de la directive européenne REACh (Registration Evaluation Autorisation of CHemicals) mais aussi de la directive cadre eau DCE (directive 2000/60/CE) du parlement Européen et du Conseil établissant une politique communautaire dans le domaine de l'eau. Il s’agit en fait d'évaluer la pertinence d’une série d’indicateurs précoces de pollution (ex : biomarqueurs) afin de prédire l'effet des substances chimiques lors de contaminations chroniques ou ponctuelles du milieu aquatique. Une approche intégrée des interactions des substances ou produits sélectionnés sur la réponse génétique, protéique, cellulaire, histologique et individuelle chez la truite arc-en-ciel, Onchorynchus mykiss, a été entreprise en mésocosmes ouverts et dynamiques et en laboratoire. In vivo, une étude multimarqueurs sur des truites juvéniles femelles diploïdes a été menée à chaque exposition, de 21 ou 28 jours, et durant une période de « récupération » afin d'estimer les effets sur la physiologie des truitelles. Le mélange de nonylphénols polyéthoxylés et l’essence utilisés pour les expositions montrent ainsi des effets qui perdurent jusqu’à la fin de cette période de « récupération ». Les mésocosmes, utilisés lors de cette thèse, offrent des conditions favorables au maintien et à la croissance de truites juvéniles. (...) Dans une démarche de recherche de biomarqueurs d’effets chez une espèce modèle, transposer ces travaux chez des poissons (mâles et femelles) à des stades de développement différents pourrait ainsi permettre d’isoler les paramètres les plus pertinents, à chaque stade ou pour l’ensemble du cycle de l’espèce, afin d’apporter de nouveaux outils pour la surveillance des milieux aquatiques. / In the aquatic ecosystems, anthropic activity, but also natural environment induce several kind of stress in aquatic organisms. Among the potential sources of stress, three chemicals were studied here: a metal, a bipyridylium herbicide, a mixture of nonylphenol polyethoxylate and an oil product exposure. This study enters within the framework of the European directive REACh (Registration Evaluation Authorization of CHemicals) but also of the Directive Cadre Eau, DCE (directive 2000/60/CE) of the European Parliament. The aim is to evaluate the relevance of an early pollution indicator pool (biomarkers) in order to predict chemical substance effects during chronic exposure or after specific contaminations of the aquatic compartment. An integrated approach of the substance effects on the genetic, proteinic, cellular, histological and individual answers in the rainbow trout, Onchorynchus mykiss, were undertaken in open and dynamic mesocosms and also laboratory. In vivo, a multibiomarker study on female juvenile trout was done at each exposure, over 21 or 28 days, followed by a period of “recovery». The mixture of nonylphenol polyethoxylate and the gasoline used for the exposures thus show effects which perdurent until the end of this period of “recovery. The mesocosms used in this study offer favorable conditions for juvenile survival and growth. (...) In addition to the assessment of the measurement robustness and the biomarker relevance, we compared the data obtained in this study with the in vivo tests and those obtained using in vitro tests. This approach made possible to highlight coherent answers between in vitro the tests and in vivo markers. But in vitro tests are only one preliminary approach to quickly seek a specific toxic action. The modulation monitoring of key genes in the fish reproduction function, during a gasoline exposure, offers complementary informationabout the pollutant mode of action. We noted that the effects of the contamination on the hormonal rates were differed in time compared to the modulation of the gene transcription. In order to bring new tools for the monitoring, in a model species, of the aquatic environment,transposing this work in male and female fish at different developmental stages would enableisolating still most relevant parameters.