The chondrichthyan (shark, batoid and holocephalan) bycatch of the Queensland East Coast Trawl Fishery (ECTF) was examined through a series of fishery-independent trawl surveys, together with fishery-dependent (opportunistic) sampling. Project aims were to document the chondrichthyan bycatch composition in order to test the effectiveness of turtle exclusion devices (TEDs) and bycatch reduction devices (BRDs), to examine biological aspects of bycatch species, and to combine data collected through these parts to assess the conservation status and sustainability of bycatch species. A total of 37 chondrichthyan species (one holocephalan, 19 batoids and 17 sharks) from 18 families were recorded in the bycatch of the fishery. The most speciose families recorded were the stingrays (Dasyatidae; 7 species), the requiem sharks (Carcharhinidae; 5 species), the catsharks (Scyliorhinidae; 4 species) and the stingarees (Urolophidae; 3 species). Chondrichthyan bycatch was highly variable between fishery sectors; catch rates were low in the tiger/Endeavour prawn sector (north Queensland; 0.02–0.12 individuals ha-1 trawled) and in the eastern king prawn (deepwater) sector (southern Queensland; 0.08 individuals ha-1 trawled), intermediate in Hervey Bay (southern Queensland; 0.25 individuals ha-1 trawled) and in the scallop sector (central Queensland coast; 0.31 individuals ha-1 trawled) and highest in the eastern king prawn (shallow water) sector (southern Queensland; 0.96 individuals ha-1 trawled). Chondrichthyan bycatch in the eastern king prawn (shallow water) sector was dominated by the three batoids Aptychotrema rostrata, Trygonoptera testacea and Urolophus kapalensis (~92% of the chondrichthyan bycatch by number), in the eastern king prawn (deepwater) sector by the skate Dipturus polyommata and the two catsharks Asymbolus rubiginosus and Figaro boardmani (~83% of the chondrichthyan bycatch by number), in the scallop sector by the three batoids A. rostrata, Neotrygon kuhlii and Neotrygon picta (~91% of the chondrichthyan bycatch by number), and in the tiger/Endeavour prawn sector by the two batoids Himantura astra and Gymnura australis and the two sharks Chiloscyllium punctatum and Hemigaleus australiensis (~67% of the chondrichthyan bycatch by number). The testing of TEDs and BRDs, which are mandatory throughout the fishery, demonstrated only a limited ability to reduce chondrichthyan bycatch in the ECTF, which is comprised mainly of relatively small species. The shorter trawl durations of the surveys compared with normal commercial activities may have under-represented larger species. No significant reductions in chondrichthyan bycatch were found using a TED and a radial escape section BRD in the eastern king prawn (shallow water) sector, using a TED and a square-mesh codend BRD in the eastern king prawn (deepwater) sector, or using a TED and a fisheye BRD in Hervey Bay. There was however, a significant difference in the probability of capturing the group ‘sharks and guitarfishes’ (comprised largely of A. rostrata) between codend types in the scallop sector, with the lowest probability of capture in nets fitted with both a TED and a square-mesh codend BRD (the difference was largely attributed to the effects of the TED). In the tiger/Endeavour prawn sector, in which three different BRDs were trialed (fisheye, square-mesh codend, square-mesh panel), the probability of capturing chondrichthyans was significantly lower in nets fitted with a fisheye BRD than in the standard (control) net, and the probability of capturing batoids was significantly lower in nets fitted with a fisheye BRD or with a square-mesh codend BRD than in the standard (control) net. The small sample size of chondrichthyan catches in some sectors may have reduced to power to detect bycatch reduction. The biology of several bycatch species from the families Rajidae, Rhinobatidae, Urolophidae and Scyliorhinidae was examined. For D. polyommata, size at birth was estimated at ~100–110 mm total length (LT), size at first feeding at ~105–110mm LT, size at 50% maturity (LT50 and 95% CI) at 321 (305–332) mm LT for females and 300 (285–306) mm LT for males. Diet (described by the index of relative importance as a percentage) was predominantly crustacean based, with carid shrimps (53.6%) and penaeoid prawns (23.3%) being the most significant prey groups. For A. rostrata, size at birth was estimated at <170 mm LT, size at 50% maturity (LT50 and 95% CI) at 640 (618–663) mm LT for females and 597 (551–649) mm LT for males, and litter size was 9–20 (n = 9; mean ± S.E. = 15.1 ± 1.2). For T. testacea, size at birth was estimated at 77–100 mm disc width (WD), size at 50% maturity (WD50 and 95% CI) at 163 (156–169) mm WD for females and 146 (140–150) mm WD for males, and litter size was always one (n = 6). For U. kapalensis, size at birth was estimated at 75–100 mm WD, size at 50% maturity (WD50 and 95% CI) at 154 (145–160) mm WD for females and 155 (149–159) mm WD for males, and litter size was always one (n = 16). The catsharks A. analis, A. rubiginosus and F. boardmani were all confirmed as single oviparous species (carrying only one egg case in each uterus at one time). Ovarian fecundity (the number of vitellogenic follicles) averaged 13.6 (range 13–20) in A. analis, 13.5 (range 5–23) in A. rubiginosus and 10.4 (range 9–13) in F. boardmani. While only limited data were available from southern Queensland, several indicators suggest that Asymbolus catsharks are reproductively active year-round. A general lack of small-sized or immature catsharks captured during the study made assessments of size at maturity difficult for these species. The conservation status of ECTF bycatch species was examined through the application of the IUCN Red List of Threatened SpeciesTM Categories and Criteria, which considers extinction risk at the global level. Of the 24 ECTF chondrichthyan bycatch species evaluated against the IUCN Red List Categories and Criteria, four have been assessed globally as Vulnerable (a threatened category indicating that a species is ‘facing a high risk of extinction in the wild’), seven as Near Threatened, 11 as Least Concern and two as Data Deficient. While the four globally threatened species (A. nichofii, Heteroscyllium colcloughi, Rhynchobatus australiae and Urolophus sufflavus) were only minor components of the ECTF bycatch, their global conservation status warrants that fisheries management and industry should act to ensure minimal impacts on these species. An ecological risk assessment method (Susceptibility-Recovery Analysis) was used to assess the relative sustainability or risk of individual species to the fishing activities of the ECTF. Two separate approaches were taken to the technique, which considers sustainability to be dependent on the susceptibility of a species to the fishery and the recovery potential of a species after depletion by fishing activities. The first approach applied the precautionary principal when data were lacking for the calculation of recovery attributes, while the second used biological data from similar species when species-specific data were lacking. The precautionary approach tended to overestimate risk to poorly known oviparous species. The biological approach suggested that A. nichofii, F. boardmani, Rhizoprionodon acutus, Rhizoprionodon taylori and Rhynchobatus palpebratus face the least risk (i.e. were the most sustainable) while several medium-large batoids and the sharks Loxodon macrorhinus and Heteroscyllium colcloughi were the species most at risk (i.e. least sustainable). Demonstrating ecological sustainability of the ECTF will need to be a continued management objective into the future. To further improve the ecological sustainability of the fishery in relation to sharks, batoids and holocephalans, a number of management recommendations are proposed: (1) give warranted conservation consideration to listed threatened species as well as species identified as being at risk; (2) expand required logbook information on chondrichthyan species to include recording of catches of these species; (3) encourage safe release practices for all chondrichthyans to maximise survivorship of discards; (4) initiate research into the survivorship of discards; (5) ensure long-term observer coverage on commercial vessels to monitor bycatch levels; and, (6) test and quantify reduced TED bar spacings (presently 120 mm) in fishery sectors which show the highest chondrichthyan bycatch levels, that is, the eastern king prawn (shallow water) and scallop sectors.

The chondrichthyan (shark, batoid and holocephalan) bycatch of the Queensland East Coast Trawl Fishery (ECTF) was examined through a series of fishery-independent trawl surveys, together with fishery-dependent (opportunistic) sampling. Project aims were to document the chondrichthyan bycatch composition in order to test the effectiveness of turtle exclusion devices (TEDs) and bycatch reduction devices (BRDs), to examine biological aspects of bycatch species, and to combine data collected through these parts to assess the conservation status and sustainability of bycatch species. A total of 37 chondrichthyan species (one holocephalan, 19 batoids and 17 sharks) from 18 families were recorded in the bycatch of the fishery. The most speciose families recorded were the stingrays (Dasyatidae; 7 species), the requiem sharks (Carcharhinidae; 5 species), the catsharks (Scyliorhinidae; 4 species) and the stingarees (Urolophidae; 3 species). Chondrichthyan bycatch was highly variable between fishery sectors; catch rates were low in the tiger/Endeavour prawn sector (north Queensland; 0.02–0.12 individuals ha-1 trawled) and in the eastern king prawn (deepwater) sector (southern Queensland; 0.08 individuals ha-1 trawled), intermediate in Hervey Bay (southern Queensland; 0.25 individuals ha-1 trawled) and in the scallop sector (central Queensland coast; 0.31 individuals ha-1 trawled) and highest in the eastern king prawn (shallow water) sector (southern Queensland; 0.96 individuals ha-1 trawled). Chondrichthyan bycatch in the eastern king prawn (shallow water) sector was dominated by the three batoids Aptychotrema rostrata, Trygonoptera testacea and Urolophus kapalensis (~92% of the chondrichthyan bycatch by number), in the eastern king prawn (deepwater) sector by the skate Dipturus polyommata and the two catsharks Asymbolus rubiginosus and Figaro boardmani (~83% of the chondrichthyan bycatch by number), in the scallop sector by the three batoids A. rostrata, Neotrygon kuhlii and Neotrygon picta (~91% of the chondrichthyan bycatch by number), and in the tiger/Endeavour prawn sector by the two batoids Himantura astra and Gymnura australis and the two sharks Chiloscyllium punctatum and Hemigaleus australiensis (~67% of the chondrichthyan bycatch by number). The testing of TEDs and BRDs, which are mandatory throughout the fishery, demonstrated only a limited ability to reduce chondrichthyan bycatch in the ECTF, which is comprised mainly of relatively small species. The shorter trawl durations of the surveys compared with normal commercial activities may have under-represented larger species. No significant reductions in chondrichthyan bycatch were found using a TED and a radial escape section BRD in the eastern king prawn (shallow water) sector, using a TED and a square-mesh codend BRD in the eastern king prawn (deepwater) sector, or using a TED and a fisheye BRD in Hervey Bay. There was however, a significant difference in the probability of capturing the group ‘sharks and guitarfishes’ (comprised largely of A. rostrata) between codend types in the scallop sector, with the lowest probability of capture in nets fitted with both a TED and a square-mesh codend BRD (the difference was largely attributed to the effects of the TED). In the tiger/Endeavour prawn sector, in which three different BRDs were trialed (fisheye, square-mesh codend, square-mesh panel), the probability of capturing chondrichthyans was significantly lower in nets fitted with a fisheye BRD than in the standard (control) net, and the probability of capturing batoids was significantly lower in nets fitted with a fisheye BRD or with a square-mesh codend BRD than in the standard (control) net. The small sample size of chondrichthyan catches in some sectors may have reduced to power to detect bycatch reduction. The biology of several bycatch species from the families Rajidae, Rhinobatidae, Urolophidae and Scyliorhinidae was examined. For D. polyommata, size at birth was estimated at ~100–110 mm total length (LT), size at first feeding at ~105–110mm LT, size at 50% maturity (LT50 and 95% CI) at 321 (305–332) mm LT for females and 300 (285–306) mm LT for males. Diet (described by the index of relative importance as a percentage) was predominantly crustacean based, with carid shrimps (53.6%) and penaeoid prawns (23.3%) being the most significant prey groups. For A. rostrata, size at birth was estimated at <170 mm LT, size at 50% maturity (LT50 and 95% CI) at 640 (618–663) mm LT for females and 597 (551–649) mm LT for males, and litter size was 9–20 (n = 9; mean ± S.E. = 15.1 ± 1.2). For T. testacea, size at birth was estimated at 77–100 mm disc width (WD), size at 50% maturity (WD50 and 95% CI) at 163 (156–169) mm WD for females and 146 (140–150) mm WD for males, and litter size was always one (n = 6). For U. kapalensis, size at birth was estimated at 75–100 mm WD, size at 50% maturity (WD50 and 95% CI) at 154 (145–160) mm WD for females and 155 (149–159) mm WD for males, and litter size was always one (n = 16). The catsharks A. analis, A. rubiginosus and F. boardmani were all confirmed as single oviparous species (carrying only one egg case in each uterus at one time). Ovarian fecundity (the number of vitellogenic follicles) averaged 13.6 (range 13–20) in A. analis, 13.5 (range 5–23) in A. rubiginosus and 10.4 (range 9–13) in F. boardmani. While only limited data were available from southern Queensland, several indicators suggest that Asymbolus catsharks are reproductively active year-round. A general lack of small-sized or immature catsharks captured during the study made assessments of size at maturity difficult for these species. The conservation status of ECTF bycatch species was examined through the application of the IUCN Red List of Threatened SpeciesTM Categories and Criteria, which considers extinction risk at the global level. Of the 24 ECTF chondrichthyan bycatch species evaluated against the IUCN Red List Categories and Criteria, four have been assessed globally as Vulnerable (a threatened category indicating that a species is ‘facing a high risk of extinction in the wild’), seven as Near Threatened, 11 as Least Concern and two as Data Deficient. While the four globally threatened species (A. nichofii, Heteroscyllium colcloughi, Rhynchobatus australiae and Urolophus sufflavus) were only minor components of the ECTF bycatch, their global conservation status warrants that fisheries management and industry should act to ensure minimal impacts on these species. An ecological risk assessment method (Susceptibility-Recovery Analysis) was used to assess the relative sustainability or risk of individual species to the fishing activities of the ECTF. Two separate approaches were taken to the technique, which considers sustainability to be dependent on the susceptibility of a species to the fishery and the recovery potential of a species after depletion by fishing activities. The first approach applied the precautionary principal when data were lacking for the calculation of recovery attributes, while the second used biological data from similar species when species-specific data were lacking. The precautionary approach tended to overestimate risk to poorly known oviparous species. The biological approach suggested that A. nichofii, F. boardmani, Rhizoprionodon acutus, Rhizoprionodon taylori and Rhynchobatus palpebratus face the least risk (i.e. were the most sustainable) while several medium-large batoids and the sharks Loxodon macrorhinus and Heteroscyllium colcloughi were the species most at risk (i.e. least sustainable). Demonstrating ecological sustainability of the ECTF will need to be a continued management objective into the future. To further improve the ecological sustainability of the fishery in relation to sharks, batoids and holocephalans, a number of management recommendations are proposed: (1) give warranted conservation consideration to listed threatened species as well as species identified as being at risk; (2) expand required logbook information on chondrichthyan species to include recording of catches of these species; (3) encourage safe release practices for all chondrichthyans to maximise survivorship of discards; (4) initiate research into the survivorship of discards; (5) ensure long-term observer coverage on commercial vessels to monitor bycatch levels; and, (6) test and quantify reduced TED bar spacings (presently 120 mm) in fishery sectors which show the highest chondrichthyan bycatch levels, that is, the eastern king prawn (shallow water) and scallop sectors.

The chondrichthyan (shark, batoid and holocephalan) bycatch of the Queensland East Coast Trawl Fishery (ECTF) was examined through a series of fishery-independent trawl surveys, together with fishery-dependent (opportunistic) sampling. Project aims were to document the chondrichthyan bycatch composition in order to test the effectiveness of turtle exclusion devices (TEDs) and bycatch reduction devices (BRDs), to examine biological aspects of bycatch species, and to combine data collected through these parts to assess the conservation status and sustainability of bycatch species. A total of 37 chondrichthyan species (one holocephalan, 19 batoids and 17 sharks) from 18 families were recorded in the bycatch of the fishery. The most speciose families recorded were the stingrays (Dasyatidae; 7 species), the requiem sharks (Carcharhinidae; 5 species), the catsharks (Scyliorhinidae; 4 species) and the stingarees (Urolophidae; 3 species). Chondrichthyan bycatch was highly variable between fishery sectors; catch rates were low in the tiger/Endeavour prawn sector (north Queensland; 0.02–0.12 individuals ha-1 trawled) and in the eastern king prawn (deepwater) sector (southern Queensland; 0.08 individuals ha-1 trawled), intermediate in Hervey Bay (southern Queensland; 0.25 individuals ha-1 trawled) and in the scallop sector (central Queensland coast; 0.31 individuals ha-1 trawled) and highest in the eastern king prawn (shallow water) sector (southern Queensland; 0.96 individuals ha-1 trawled). Chondrichthyan bycatch in the eastern king prawn (shallow water) sector was dominated by the three batoids Aptychotrema rostrata, Trygonoptera testacea and Urolophus kapalensis (~92% of the chondrichthyan bycatch by number), in the eastern king prawn (deepwater) sector by the skate Dipturus polyommata and the two catsharks Asymbolus rubiginosus and Figaro boardmani (~83% of the chondrichthyan bycatch by number), in the scallop sector by the three batoids A. rostrata, Neotrygon kuhlii and Neotrygon picta (~91% of the chondrichthyan bycatch by number), and in the tiger/Endeavour prawn sector by the two batoids Himantura astra and Gymnura australis and the two sharks Chiloscyllium punctatum and Hemigaleus australiensis (~67% of the chondrichthyan bycatch by number). The testing of TEDs and BRDs, which are mandatory throughout the fishery, demonstrated only a limited ability to reduce chondrichthyan bycatch in the ECTF, which is comprised mainly of relatively small species. The shorter trawl durations of the surveys compared with normal commercial activities may have under-represented larger species. No significant reductions in chondrichthyan bycatch were found using a TED and a radial escape section BRD in the eastern king prawn (shallow water) sector, using a TED and a square-mesh codend BRD in the eastern king prawn (deepwater) sector, or using a TED and a fisheye BRD in Hervey Bay. There was however, a significant difference in the probability of capturing the group ‘sharks and guitarfishes’ (comprised largely of A. rostrata) between codend types in the scallop sector, with the lowest probability of capture in nets fitted with both a TED and a square-mesh codend BRD (the difference was largely attributed to the effects of the TED). In the tiger/Endeavour prawn sector, in which three different BRDs were trialed (fisheye, square-mesh codend, square-mesh panel), the probability of capturing chondrichthyans was significantly lower in nets fitted with a fisheye BRD than in the standard (control) net, and the probability of capturing batoids was significantly lower in nets fitted with a fisheye BRD or with a square-mesh codend BRD than in the standard (control) net. The small sample size of chondrichthyan catches in some sectors may have reduced to power to detect bycatch reduction. The biology of several bycatch species from the families Rajidae, Rhinobatidae, Urolophidae and Scyliorhinidae was examined. For D. polyommata, size at birth was estimated at ~100–110 mm total length (LT), size at first feeding at ~105–110mm LT, size at 50% maturity (LT50 and 95% CI) at 321 (305–332) mm LT for females and 300 (285–306) mm LT for males. Diet (described by the index of relative importance as a percentage) was predominantly crustacean based, with carid shrimps (53.6%) and penaeoid prawns (23.3%) being the most significant prey groups. For A. rostrata, size at birth was estimated at <170 mm LT, size at 50% maturity (LT50 and 95% CI) at 640 (618–663) mm LT for females and 597 (551–649) mm LT for males, and litter size was 9–20 (n = 9; mean ± S.E. = 15.1 ± 1.2). For T. testacea, size at birth was estimated at 77–100 mm disc width (WD), size at 50% maturity (WD50 and 95% CI) at 163 (156–169) mm WD for females and 146 (140–150) mm WD for males, and litter size was always one (n = 6). For U. kapalensis, size at birth was estimated at 75–100 mm WD, size at 50% maturity (WD50 and 95% CI) at 154 (145–160) mm WD for females and 155 (149–159) mm WD for males, and litter size was always one (n = 16). The catsharks A. analis, A. rubiginosus and F. boardmani were all confirmed as single oviparous species (carrying only one egg case in each uterus at one time). Ovarian fecundity (the number of vitellogenic follicles) averaged 13.6 (range 13–20) in A. analis, 13.5 (range 5–23) in A. rubiginosus and 10.4 (range 9–13) in F. boardmani. While only limited data were available from southern Queensland, several indicators suggest that Asymbolus catsharks are reproductively active year-round. A general lack of small-sized or immature catsharks captured during the study made assessments of size at maturity difficult for these species. The conservation status of ECTF bycatch species was examined through the application of the IUCN Red List of Threatened SpeciesTM Categories and Criteria, which considers extinction risk at the global level. Of the 24 ECTF chondrichthyan bycatch species evaluated against the IUCN Red List Categories and Criteria, four have been assessed globally as Vulnerable (a threatened category indicating that a species is ‘facing a high risk of extinction in the wild’), seven as Near Threatened, 11 as Least Concern and two as Data Deficient. While the four globally threatened species (A. nichofii, Heteroscyllium colcloughi, Rhynchobatus australiae and Urolophus sufflavus) were only minor components of the ECTF bycatch, their global conservation status warrants that fisheries management and industry should act to ensure minimal impacts on these species. An ecological risk assessment method (Susceptibility-Recovery Analysis) was used to assess the relative sustainability or risk of individual species to the fishing activities of the ECTF. Two separate approaches were taken to the technique, which considers sustainability to be dependent on the susceptibility of a species to the fishery and the recovery potential of a species after depletion by fishing activities. The first approach applied the precautionary principal when data were lacking for the calculation of recovery attributes, while the second used biological data from similar species when species-specific data were lacking. The precautionary approach tended to overestimate risk to poorly known oviparous species. The biological approach suggested that A. nichofii, F. boardmani, Rhizoprionodon acutus, Rhizoprionodon taylori and Rhynchobatus palpebratus face the least risk (i.e. were the most sustainable) while several medium-large batoids and the sharks Loxodon macrorhinus and Heteroscyllium colcloughi were the species most at risk (i.e. least sustainable). Demonstrating ecological sustainability of the ECTF will need to be a continued management objective into the future. To further improve the ecological sustainability of the fishery in relation to sharks, batoids and holocephalans, a number of management recommendations are proposed: (1) give warranted conservation consideration to listed threatened species as well as species identified as being at risk; (2) expand required logbook information on chondrichthyan species to include recording of catches of these species; (3) encourage safe release practices for all chondrichthyans to maximise survivorship of discards; (4) initiate research into the survivorship of discards; (5) ensure long-term observer coverage on commercial vessels to monitor bycatch levels; and, (6) test and quantify reduced TED bar spacings (presently 120 mm) in fishery sectors which show the highest chondrichthyan bycatch levels, that is, the eastern king prawn (shallow water) and scallop sectors.

Orientador: Roberto Goitein / Banca: Teodoro Vaske Júnior / Banca: Leandro Muller Gomiero / Resumo: O presente estudo pretende avaliar a relação entre morfologia e alimentação em duas espécies de raias comumente encontradas no sudeste do Estado de São Paulo. A parte referente à alimentação avaliou quali e quantitativamente a alimentação de Zapteryx brevirostris e Rioraja agassizi através da análise de seus conteúdos estomacais. Avaliou-se também o tamanho de nicho utilizado para cada espécie e possível sobreposição destes nichos. Os resultados revelaram que as duas espécies utilizam quase os mesmos recursos alimentares, com pequenas diferenças no que se refere à frequência de ocorrência de alguns itens entre sexo, maturidade, estações do ano, e entre as espécies. Apenas adultos se alimentaram de peixes, provavelmente por causa do tamanho da presa e agilidade necessária para captura. Z. brevirostris apresentou amplitude de nicho significativamente maior que R. agassizi, e que a sobreposição de nichos das duas espécies é moderada. No que diz respeito à parte relacionada à ecomorfologia, foram analisadas variáveis previamente consideradas importantes para alimentação e locomoção para aquisição de presas. Os resultados referentes à análise intraespecífica não revelaram diferença entre jovens e adultos para as duas espécies, porém quando se avaliou as diferenças entre os sexos algumas medidas se apresentaram diferentemente para machos e fêmeas, principalmente no que se refere à variáveis relacionadas à regiões relacionadas aos caracteres sexuais secundários conhecidos para estes animais. Par a análise interespecífica, todas as variáveis analisadas foram consideradas diferentes estatisticamente, menos a protrusão da mandíbula. Pode-se notar uma padrão quando se observa os resultados comparados para as duas espécies: Z. brevirostris apresentou maiores valores médios para variáveis morfológicas relacionadas à locomoção utilizando... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: The present study intends to evaluate the relationship between morphology and feeding in two species of skates found commonly in the southeast coast of São Paulo. With respect to feeding analisis, the feeding habits of Zapteryx brevirostris and Rioraja agassizi were stabilished through the analysis of your stomach contents. It was evaluated the niche breadth also used for each species and possible niche overlap. The results revealed that the two species almost use the same feeding resources, with small differences in what refers to the occurrence frequency of some items among sex, maturity, seasons, and between species. Adults just fed of fish, probably because of the size of the prey and necessary agility for capture. Z. brevirostris presented niche width significantly larger than R. agassizi, and the niche overlap for the two species is moderated. Whem we starts the ecomorphological part of this study, variables considered previously important were analyzed for feeding and locomotion for acquisition of preys. The referring results to the intraspecific analysis didn't reveal differences between juvenile and adults for the two species, however when it was evaluated the differences among the sexes some measures presented differently for males and females, mainly in what refers to body areas related to secondary sexual characters. What refers to the interespecific analysis, all the analyzed variables were statistically diferent, except for protrusion of the jaw. We can note a pattern when observing the results compared for the two species: Z. brevirostris presented larger values for morphologic variables related to the locomotion using the scaudal peduncle as main propeller, and R. agassizi revealed more important data with relationship to the use of the undulation of the pectoral fins fused to the head. The absence of caudal fin in R. agassizi still corroborates more the fact than... (Complete abstract click electronic access below) / Mestre

Made available in DSpace on 2014-06-11T19:30:15Z (GMT). No. of bitstreams: 0 Previous issue date: 2010-11-29Bitstream added on 2014-06-13T20:20:38Z : No. of bitstreams: 1 pasquino_af_me_rcla.pdf: 1012394 bytes, checksum: 0d26d627c0c897ba4a37855577d00a60 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / O presente estudo pretende avaliar a relação entre morfologia e alimentação em duas espécies de raias comumente encontradas no sudeste do Estado de São Paulo. A parte referente à alimentação avaliou quali e quantitativamente a alimentação de Zapteryx brevirostris e Rioraja agassizi através da análise de seus conteúdos estomacais. Avaliou-se também o tamanho de nicho utilizado para cada espécie e possível sobreposição destes nichos. Os resultados revelaram que as duas espécies utilizam quase os mesmos recursos alimentares, com pequenas diferenças no que se refere à frequência de ocorrência de alguns itens entre sexo, maturidade, estações do ano, e entre as espécies. Apenas adultos se alimentaram de peixes, provavelmente por causa do tamanho da presa e agilidade necessária para captura. Z. brevirostris apresentou amplitude de nicho significativamente maior que R. agassizi, e que a sobreposição de nichos das duas espécies é moderada. No que diz respeito à parte relacionada à ecomorfologia, foram analisadas variáveis previamente consideradas importantes para alimentação e locomoção para aquisição de presas. Os resultados referentes à análise intraespecífica não revelaram diferença entre jovens e adultos para as duas espécies, porém quando se avaliou as diferenças entre os sexos algumas medidas se apresentaram diferentemente para machos e fêmeas, principalmente no que se refere à variáveis relacionadas à regiões relacionadas aos caracteres sexuais secundários conhecidos para estes animais. Par a análise interespecífica, todas as variáveis analisadas foram consideradas diferentes estatisticamente, menos a protrusão da mandíbula. Pode-se notar uma padrão quando se observa os resultados comparados para as duas espécies: Z. brevirostris apresentou maiores valores médios para variáveis morfológicas relacionadas à locomoção utilizando... / The present study intends to evaluate the relationship between morphology and feeding in two species of skates found commonly in the southeast coast of São Paulo. With respect to feeding analisis, the feeding habits of Zapteryx brevirostris and Rioraja agassizi were stabilished through the analysis of your stomach contents. It was evaluated the niche breadth also used for each species and possible niche overlap. The results revealed that the two species almost use the same feeding resources, with small differences in what refers to the occurrence frequency of some items among sex, maturity, seasons, and between species. Adults just fed of fish, probably because of the size of the prey and necessary agility for capture. Z. brevirostris presented niche width significantly larger than R. agassizi, and the niche overlap for the two species is moderated. Whem we starts the ecomorphological part of this study, variables considered previously important were analyzed for feeding and locomotion for acquisition of preys. The referring results to the intraspecific analysis didn't reveal differences between juvenile and adults for the two species, however when it was evaluated the differences among the sexes some measures presented differently for males and females, mainly in what refers to body areas related to secondary sexual characters. What refers to the interespecific analysis, all the analyzed variables were statistically diferent, except for protrusion of the jaw. We can note a pattern when observing the results compared for the two species: Z. brevirostris presented larger values for morphologic variables related to the locomotion using the scaudal peduncle as main propeller, and R. agassizi revealed more important data with relationship to the use of the undulation of the pectoral fins fused to the head. The absence of caudal fin in R. agassizi still corroborates more the fact than... (Complete abstract click electronic access below)

In chapter 1 I describe the population dynamics of an understudied species of gulper shark, Centrophorus uyato (common name, the Little Gulper), found in the Northern Gulf of Mexico. Sharks in the family Centrophoridae are mid-sized, demersal fish, with seven species identified in North American waters. These deepwater species can be difficult to study due to the extreme depths at which they occur. During four longlining cruises from 2012-2014, 593 sharks were landed, predominantly in the Mississippi Canyon off the Louisiana coast. Mean depth of capture was 290 m. Supplementing these data are catch records for C. uyato from a second series of cruises east of these stations. These data suggest the Little Gulper displays sexual dimorphism in its population size structure, similar to other elasmobranchs. Length frequency distributions, sex ratios by length, and length-weight curves were similar for both catch series, however females comprised a greater fraction of the catch from Mississippi Canyon stations compared to those further east. The high incidence of females in the region may indicate the use of Mississippi Canyon as a nursery for C. uyato, and the species' tendency to sexually segregate at some point in its life history. A high number of large, pregnant females, along with observations of recently delivered animals, was noted at the Mississippi Canyon sites. Little Gulper sex ratios by length exhibited a characteristic "notch", indicative of a low female-to-male ratio at intermediate lengths, then a reversal to female dominance at the largest sizes captured. I modeled this curve under various assumptions of growth, mortality, and longevity for the species. The combination of the von Bertalanffy growth parameter, K, and the total instantaneous mortality rate, Z, that best fit the data suggests a population of slow growing, long-lived animals with a differentially higher growth rate for males. In chapter 2, I examine species associations among elasmobranchs in the Northern Gulf of Mexico in relation to depth of capture. From 2011-2014, 3609 sharks, comprising 31 species in 10 families, were landed on five long-lining cruises throughout the Northern Gulf and along the West Florida Shelf. Stations were grouped a priori according to depth into one of three categories, based on pre-existing divisions in the station data: 0-73 m (shallow), 110-146 m (intermediate), and 183 m or greater (deep). Using a non-parametric multivariate analysis of variance (NP-MANOVA) and a pairwise test found I found significant differences in species composition among all three depth groupings. Gulf Smoothhound (Mustelus sinusmexicanus) and Atlantic Sharpnose (Rhizoprionodon terraenovae) contributed most to the differences, and also accounted for over 65% of the total catch. A canonical analysis of principal coordinates (CAP) showed mid-water species such as the Scalloped Hammerhead (Sphyrna lewini) to be more indicative of intermediate depth stations, while the Little Gulper (Centrophorus uyato) and Shortspine Dogfish (Squalus mitsukurii) distinguished deepwater sites. A "leave-one-out cross-validation" (LOO-CV) procedure correctly re-classified 78% of the samples back into their a priori groupings; catches from the shallow and deep groups were never confused for one another, although there was moderate confusion with classifying catches from intermediate stations. Taking into consideration the potentially large movements undertaken by many shark species on both small and large time scales, as well as additional biological and physical drivers for range and location, it is unsurprising that these animals would be present in two or more depth groups, and thus more frequently misclassified. I also performed a second analysis grouping the stations according to their location on the West Florida Shelf, or in the eastern or western quadrants of the Northern Gulf of Mexico. Again I found significant differences among the species composition of all three station groups, but the LOO-CV overall reclassification success rate was lower than when the stations were grouped according to depth. There was also a smaller interval between this reclassification success rate and one performed using random group allocation. Both of these chapters provide data on previously poorly understood species and phenomena in the Northern Gulf of Mexico. These data are important in defining the potential susceptibility of shark species and communities to future threats, including by-catch in fisheries and contamination events such as shallow and deepwater oil spills.

The blue shark (Prionace glauca) is among the most abundant and widely distributed of all oceanic elasmobranchs. Millions of blue sharks are caught annually worldwide in pelagic long line fisheries, and it accounts for the largest component of auctioned fin weight in the international shark fin trade. There is growing concern about the depletion of its populations worldwide and impacts of such large scale removal of an apex predator on oceanic ecosystem stability. The fragmentary nature of life history information available for blue sharks, including on its detailed movement and migratory behavior, continues to limit management efforts that require such data for stock assessment and sustainable catch modeling. To assist in obtaining a better understanding of blue shark movement behavior in the western north Atlantic, I used satellite telemetry to investigate the detailed habitat utilization and movements of sharks during the summer months when the sharks form aggregations on the continental shelf off the Northeast United States, and during their fall , pelagic migrations. Thirty-one (26 male, 5 female) blue sharks were tagged with pop-up archival satellite transmitters. The transmitters reported data from a total of 1,656 combined days, yielding 74,163 depth recordings and 74,125 temperature recordings. Tracked sharks exhibited two distinct movement patterns: During the summer months, the sharks remained within a restricted geographical area south of Nantucket Island and spent nearly 80% of their time in the uppermost part of the water column in <20 m depth (mean depth of 8 m). During fall months (October and November) the sharks made fairly directed offshore and southerly movements, with several sharks associating with waters east of Bermuda. During their pelagic migrations, the sharks demonstrated markedly different water column utilization behavior. They occupied much greater depths (127 m mean depth) and exhibited a clear diel depth pattern, occupying deeper water during the day and shallower water at night, not observed on the shelf. The longest duration track was that of an immature female for nine months. The greatest distance traveled was by a mature male that moved from Martha's Vineyard, MA to waters near Puerto Rico (a linear distance > 4,000 km). There was some indication that the different demographic groups (mature males, immature males, and immature females) may display different movement behavior, especially during their pelagic migrations. This study provides the first detailed information on habitat utilization and movement patterns of blue sharks in the Western North Atlantic, and points to the need for further investigation of movement behavior by different demographic segments of the population.

In many vertebrate and invertebrate species mediators of innate immunity include antimicrobial peptides (AMPs) such as peptide fragments of histones and other proteins with previously ascribed different functions. Shark AMPs have not been described and this research examines the antibacterial activity of nurse shark (Ginglymostoma cirratum) peripheral blood leukocyte lysates. Screening of lysates prepared by homogenizing unstimulated peripheral blood leukocytes identified muramidase (lysozyme-like) and non-muramidase antibacterial activity. Lysates were tested for lysozyme using the lysoplate assays, and antibacterial (AB) activity was assayed for by a microdilution growth assay that was developed using Planococcus citreus as the target bacterium. Fractionation of crude lysates by ion exchange and affinity chromatography was followed by a combination of SDS-PAGE with LC/MS-MS and/or N-terminal sequence analysis of low molecular weight protein bands (kDa). This yielded several peptides with amino acid sequence similarity to lysozyme, ubiquitin, hemoglobin, human histones H2A, H2B and H4 and to antibacterial histone fragments of the catfish and the Asian toad. Not all peptide sequences corresponded to peptides potentially antibacterial. The correlation of a specific protein band in active lysate fractions was accomplished by employing the acid-urea gel overlay assays in which AB activity was seen as zones of growth inhibition on a lawn of P. citreus at a position corresponding to that of the putative AB protein band. This study is the first to describe putative AMPs in the shark and their potential role in innate immunity.

Chondrichthyans—sharks, rays, skates, and chimaeras—influence top down control of food webs and connect disparate ecosystems, yet populations of many species around the world have experienced sharp declines in abundance. Marine protected areas (MPAs) have a long history of conserving marine biodiversity, but their effectiveness to protect representative and critical habitat for threatened species on a global scale is controversial and hindered by a lack of biological and ecological data for the majority of chondrichthyan species. In this thesis, I use non-invasive baited remote underwater video (BRUV) and citizen science diver data to explore diverse chondrichthyan communities in two countries, South Africa and Costa Rica, with data-poor chondrichthyan fisheries and limit conservation funding, and the relationships of these chondrichthyans to biotic and abiotic factors in their habitats in and around MPAs. First, through a literature review, I find substantial taxonomic and geographic biases in understanding of reef shark biology, ecology, and conservation, which impair ability to implement effective conservation measures for these species. After identifying these research gaps, I used BRUVs to explore the diversity of a chondrichthyan hotspot in South Africa, finding many poorly understood endemic chondrichthyans. I discovered strong associations of the chondricthyan community to different habitat types (sand versus reef and kelp habitat), which resulted in poor diversity within one of the region’s larger MPAs—a whale sanctuary whose focus on large charismatic whales left mostly poorer quality sand habitat protected. However, a high occurrence of chondrichthyans within a neighbouring MPA suggested even small MPAs can conserve a high abundance of smaller species, especially if residency can be demonstrated. I then used the BRUV data to examine the relationships amongst these chondrichthyans and the community of other marine animals within the region, finding strong co-occurrence patterns that suggest chondrichthyans, particularly the endemic catsharks, could serve as effective ‘umbrella’ species for conservation in this region where little other information is available for conservation planning and monitoring. Finally, at Cocos Island, an MPA off Costa Rica, I discovered similarly strong, species-specific associations to another aspect of habitat: temperature. I found significant and species-specific responses to the El Niño–Southern Oscillation (ENSO). For example, the scalloped hammerhead Sphryna lewini counts declined by 224.7% during strong El Niño conditions and by 14.7% with just a 1°C rise in SST, while the benthic whitetip reef shark Triaenodon obesus had a weaker response, dropping by only 7.9% and 4.4%, respectively. In general, strong El Niño events reduced sightings within the MPA, providing some of the first indications of how a rising frequency and intensity of these events will impact the spatial distribution of both chondrichthyans and their habitat in the Eastern Tropical Pacific. Overall, this thesis provides insight into the factors influencing chondrichthyan abundance and diversity, demonstrating the importance of considering both biotic and abiotic factors during MPA design and the need to study these factors across diverse taxonomic groups and ecosystems. / Graduate / 2021-05-08

Once so abundant as to be called the ‘common’ angelshark, Squatina squatina has been extirpated from nearly the entirety of its historical range, from the eastern North Atlantic, to the Mediterranean Sea [International Union for the Conservation of Nature (IUCN) Red List: Critically Endangered]. The angelshark now only occurs in any abundance in the waters surrounding the Canary Islands. I present the first genetic assessment of the angelshark’s population dynamics and diversity from three locations within the Canary Islands archipelago: Gran Canaria, Tenerife, and Lanzarote. Using a suite of individual mitochondrial genome regions [Control region (CR), NADH dehydrogenase subunit 2 (ND2), NADH dehydrogenase subunit 4 (ND4), and Cytochrome c oxidase subunit 1 (COI)], the complete mitogenome, and nuclear markers [microsatellites and Internal Transcribed Spacer 2 (ITS2)] this work aimed to i) assess the genetic diversity of the angelshark in comparison to other endangered or historically overfished elasmobranchs, ii) examine the relative nucleotide variability across different marker sets, and iii) assess fine-scale multi-locus population structure within the Canary Islands, as well as broad-scale population genetic structure of angelsharks throughout its historic Eastern Atlantic and Mediterranean range. Results revealed exceptionally low genetic diversity across all individual mitochondrial regions sequenced (CR, π % = 0.0046 ± 0.016; ND2, π % = 0; ND4, π % = 0; COI, π % = 0), yielding some of the lowest values reported to date in any elasmobranch. Mitogenome analysis followed this low diversity trend with only 11 single nucleotide polymorphisms seen across all Canary Island individuals in a genome of 16,689 bp (π % = 0.0257 ± 0.0166). Furthermore, screening of 35 microsatellite markers across 34 individuals revealed all but two loci to be monomorphic and nuclear ITS2 showed negligible diversity. Lanzarote showed significant population differentiation from both Gran Canaria (ΦST = 0.073, p = 0.004, FST = 0.113, p = 0.00) and Tenerife (ΦST = 0.029, p = 0.001, FST = 0.065, p = 0.001) at the CR. Haplotype analysis of whole mitogenomes also demonstrated Lanzarote individuals forming a separate lineage from angelsharks at the other two islands. Broad- scale structure across the angelshark’s historical range was detected between the Canary Islands and Mediterranean (ΦST = 0.792, p = 0.000, FST = 0.785, p = 0.000), indicating a regional break between populations. The exceptionally low levels of genetic diversity in angelsharks in the Canary Islands, as well as indications of population isolation from the rest of the angelshark’s historical range, suggest an immediate need for strong conservation measures to ensure the protection and continued persistence of this highly vulnerable and ecologically unique species.