This study focused on the dispersal and dispersion of southern elephant seals, Mirounga leonina, at Marion Island in relation to their natal site, and to their site of first reproduction. Movements from the natal site to terrestrial haulouts used for reproduction, and between successive reproductive sites, were defined as dispersal, while movements from the natal site to sites used for purposes other than reproduction, were defined as dispersion. Some 33000 records collected over 12 years, of haul outs at 54 different sites of 5700 tagged seals, formed the database analysed. Both male and female seals were found to use sites closer to their natal site than expected, for reproductive, moult and winter haulouts. However, breeding seals used sites closer to their site of first reproduction than their natal site, on subsequent reproductive haulouts. No difference was found between the mean distances dispersed to moult sites and to winter haulout sites, but distances of dispersal were significantly less than distances of dispersion. Female seals dispersed further than males to reproductive sites, but no difference between the sexes was apparent for moult and winter dispersion. While the number of male seals hauling out to reproduce was too small to assess the effects of various factors on the dispersal of males, a number of factors influenced the dispersion of male seals, and dispersion and dispersal of female seals. These included age, isolation of natal site, anthropogenic disturbance, natal harem size and natal harem pre-weaning mortality. A number of hypotheses are proposed to explain the reasons behind the results found, and the direction of future research concerning the movements of southern elephant seals and their choice of terrestrial environment is suggested. / Dissertation (MSc (Zoology))--University of Pretoria, 2006. / ab2013 / Zoology and Entomology / unrestricted

The demography of two elephant seal populations was examined and compared. This was done to investigate the reasons for the observed decreases in populations at Marion and Macquarie islands. While a well-established demographic programme had been in place at Marion Island since the 1980's (see Pistorius et al. (l999a) for a review) one had to be established at Macquarie Island. A long-term demographic programme was initiated at Macquarie Island in 1993 and hot brands were used to mark seals. Hot-iron branding was a rapid and reliable method of permanently identifying elephant seals that did not prejudice survival and did not appear to cause undue stress (in the short-term). Neither branding nor handling showed any long-term effects as measured by survival after one year. From the inter-island comparison of survivorship, age at first breeding and wean mass I concluded that the observed decreases in elephant seal numbers between the I 950s and 1990s in the Pacific and Indian Ocean sectors were driven by resource limitation in the Southern Ocean. A conglomerate of factors including local predation by killer whales and intra-specific resource competition was postulated as a cause for the inter-island (regional) differences in population trends. Presently it appears that per capita more resources are available to the Marion Island population than are available to the Macquarie Island population. The vital rates that had the greatest impact (elasticity) on fitness (population growth) for all populations i.e. Marion Island, Macquarie Island and South Georgia, were, in order of importance: (I) juvenile survival, (2) adult survival, (3) adult fecundity and (4) juvenile fecundity. At Marion Island juvenile and adult survival contributed equally to the fitness of the population while at Macquarie Island and at South Georgia Island juvenile survival was more important than adult survival in determining population fitness. The global population of elephant seals in 200 I was estimated at approximately 738 772 which represents an increase of I I % from the last world estimate (664 000). It seems clear from the evidence presented and reviewed here that the present changes in seal populations, unlike the period of direct exploitation in the 19th and 20th centuries, are neither a consequence of direct human interactions nor present-day commercial activities. While the significance of inter-specific competition between elephant seals and other Antarctic predators remain largely unknown or quantified, it would seem prudent that these relationships be studied. This is because resource competitors (toothed whales) have been increasing in number since the cessation of commercial whaling. Even though elephant seals are considered the most studied of all pinnipeds (Ling&Bryden, 1992) much remains to be learnt. Foremost are to gain a clear understanding of the in situ, diet of elephant seals and to assess the role pathogens play in the regulation of seal populations. In addition to these studies it is also important that the current long-term monitoring programmes at Marion and Macquarie islands continue, as they provide valuable base line information on the fate of elephant seal populations. / Thesis (PhD (Zoology))--University of Pretoria, 2005. / Zoology and Entomology / unrestricted

The southern elephant seal (SES), Mirounga leonina, was intensively harvested during the 18th and 19th centuries, though never reduced to the levels seen for the northern species (Mirounga angustirostris). Although a number of putative populations occurring within the species’ circumpolar distribution in the Southern Ocean have been genetically assessed, no data was previously available for the Marion Island population. This study integrates Marion Island into the broader database by genetically profiling individuals with 9 microsatellite DNA loci (n = 73) and a single mitochondrial DNA (mtDNA, n = 68) locus corresponding to hypervariable region I (HVRI) of the non-coding displacement loop (D-loop). These data were then combined with existing haplotype datasets from five island populations, namely Heard Island, Peninsula Valdés, Macquarie Island, South Georgia, Elephant Island, and Sea Lion Island breeding colonies, and with comparable microsatellite typing data from four populations, namely Peninsula Valdés, South Georgia, Elephant Island and Sea Lion island, respectively, permitting inter-population level comparisons. Genetic variation of the Marion Island population was high for both microsatellite and mtDNA and consistent with levels previously reported for the other populations, with the exception of Peninsula Valdés (Argentina) where diversity levels are low. Forty polymorphic sites defined 44 mtDNA haplotypes from 68 Marion Island individuals. Of the 44 sequence haplotypes, three were shared with Sea Lion Island, one with Elephant Island, two with Heard Island and one with Macquarie Island. From the microsatellite data, it was found that Marion Island, like most other SES populations, had no private alleles. The one exceptional population is that at Sea Lion Island which has several private alleles at two loci. Marion Island was significantly differentiated from each of the other breeding colonies included in the study based on FST analyses for both microsatellite and mtDNA data. The magnitude of genetic differentiation between Marion Island and the South Georgia, Sea Lion and Elephant Islands was somewhat higher than that previously reported when the latter three islands were compared, but considerably less than the differentiation found between Marion Island and either Peninsula Valdés or Macquarie Island. Though the two markers showed similar trends with respect to population structuring, the pairwise differentiation at microsatellite loci was an order of magnitude lower than that of mtDNA, suggesting more frequent male-mediated gene flow between putative populations than female-mediated gene flow. Higher male dispersal was also confirmed by migration rate estimates from the microsatellite data compared to estimates from the mtDNA locus. These data are consistent with the earlier interpretation that most putative island populations show moderate levels of differentiation not directly related to geographic distance, while the mainland population in Argentina and the population at Macquarie Island stand out as being highly differentiated from the rest. / Dissertation (MSc)--University of Pretoria, 2008. / Zoology and Entomology / unrestricted

While studies of dispersal note significant fidelity to natal site and to the site of first reproduction, few consider fidelity to other sites, and none have done so systematically. This study examined fidelity to all terrestrial sites within the study area during the course of its life, by a migratory marine predator, the southern elephant seal, Mirounga leonina. It also attempted to assess the role played by the winter haulout in terms of site fidelity. Finally it examined the influence of possible deterioration in spatial memory over time on site fidelity. The data used in this study were generated by a long-term mark-recapture programme conducted at subantarctic Marion Island. Although immature elephant seals of both sexes return to the vicinity of their natal sites, they appear to avoid popular breeding beaches, returning closest to the site previously used. At the first reproductive haulout, however, females return closer to their natal site than any other site, while males, although hauling out in the vicinity of their natal site, haul out closest to sites used in the year prior to the first breeding haulout. Subsequently, adults of both sexes breed closest to the breeding haulout of the previous year and moult closest to the moult haulout of the previous year. While males show greater site fidelity during the breeding season, there is no difference in site fidelity during the moult. Primiparous females show greater levels of site fidelity if recorded in the study site as an immature animal during either the winter or the moult haulouts. Also in female elephant seals, lower site fidelity is associated with an increase in the duration of period of absence from a site, and a lower number of visits to a site. Various factors related to site familiarity, social factors and anthropogenic disturbance may be responsible for the lack of strict site fidelity that is evident. Dispersal patterns may differ between the sexes due to differences in their life history. While purpose of the winter haulout by immature seals may be to increase familiarity with haulout sites, and thus site fidelity, the moult haulout also plays a role. / Thesis (PhD)--University of Pretoria, 2013. / Zoology and Entomology / Unrestricted

Thesis (PhD)--University of Pretoria, 1992. / gm2014 / Zoology and Entomology / unrestricted

The Vertebrate Integrative Physiology (VIP) lab monitors the population of northern elephant seals at the largest mainland breeding colony, located at Piedras Blancas (San Simeon, CA). As the population expands, more human-seal interactions and conflicts over land use occur. The VIP lab's work informs California State Parks and helps with the management of the rookery. Currently, members of the VIP lab fly a drone over the beaches, capture multiple images, and manually count the seals, which takes around 14 to 21 hours of analysis per survey. Machine learning methods such as Convolutional Neural Networks (CNN) and Region-based Convolutional Neural Networks (RCNN) have been shown to quickly and accurately determine the count but require lots of data, which is not feasible for this task due to the 79 available beach images. By dividing larger beach images into smaller sub-images, it is possible to generate more data, facilitating the use of deep learning techniques. This thesis outlines a pipeline to use these sub-images and determine the seal count of a beach image.

Les mammifères marins de l'Océan Austral sont des éléments essentiels des écosystèmes marins antarctiques et des sentinelles de l’état des océans polaires. Comprendre comment les conditions océanographiques déterminent leurs habitats préférentiels est essentiel pour identifier de quelle façon et dans quelle région ces mammifères acquièrent les ressources nécessaires à leur déplacement, leur croissance, leur reproduction et donc leur survie. Les éléphants de mer du Sud (Mirounga leonina) se déplacent dans l’océan austral à l’échelle des bassins océaniques pour s’alimenter en plongeant en moyenne à 500 m et jusqu’à 2000 m de profondeur. En fonction de leur colonie d’origine, de leur sexe, et de leur âge, ils exploitent des régions radicalement différentes de l’océan austral, mettant ainsi en œuvre des stratégies alimentaires diversifiées. Les éléphants de mer de Kerguelen utilisent deux zones préférentiellement: la zone du Front Polaire ou la zone Antarctique couverte par la banquise. Dans cette thèse, les stratégies alimentaires des voyages post-mue Antarctiques de 46 mâles et femelles éléphants de mer de Kerguelen ont été étudiées. Une série temporelle de 11 années (2004-2014) de données de déplacement, de plongées et de données hydrologiques a été analysée pour déterminer le rôle des paramètres océanographiques et de glaces de mer impliqués dans l’acquisition des ressources alimentaires des éléphants de mer en Antarctique. L’influence de la variabilité spatio-temporelle et interannuelle de la glace de mer associée à la position des mâles et des femelles ainsi que le rôle des polynies côtières sur les stratégies alimentaires des mâles en hiver ont été examinés. / Understanding how physical properties of the environment underpin habitat selection of large marine vertebrates is crucial in identifying how and where animals acquire resources necessary for locomotion, growth and reproduction and ultimately their fitness. The Southern Ocean harbors one of the largest and most dynamic marine ecosystems on our planet which arises from the presence of two majors physical features, (i) the Antarctic Circumpolar Current and (ii) the seasonal sea ice cover region. In the Antarctic, marine predators are exposed to climate-induced shifts in atmospheric circulation and sea ice. However, because these shifts vary regionally, and because much remains to be understood about how individual animals use their environment, it has been difficult to make predictions on how animals may respond to climate variability. Southern elephant seals (Mirounga leonina) are a major consumer of Southern Ocean resources and use two main large scale foraging strategies, (i) feeding in the frontal zone of the Southern Ocean, or (ii) feeding in the seasonal sea ice region. In the present thesis I examined the winter post-moulting foraging strategies of 46 male and female Kerguelen southern elephant seals which utilized the second strategy. Using an eleven year time-series of tracking, diving, and seal-collected hydrographic data (from 2004-2014) I assessed their movements and foraging performance in relation to in situ hydrographic and sea ice conditions. The influence of both the spatio-temporal and inter-annual variability of sea ice around seal locations was investigated, and an investigation on the role of polynya for male elephant seal during winter conducted.

The waters of the open ocean constitute the largest living space on Earth but despite its obvious significance to the biosphere, the open ocean remains an unexplored frontier. With a regional focus on the Indian Ocean, this thesis investigates (i) the distribution of pelagic biota on basin scales, (ii) the effect of abrupt topography on pelagic biota and their predator-prey relationships, and (iii) the use of genetic techniques to elucidate population connectivity and dispersal of pelagic taxa. (i) Pelagic scattering layers (SLs) were surveyed with scientific echosounders across the southwest (SWIO) and central Indian Ocean to investigate their vertical and geographical distribution. Structurally distinct SL regimes were found across the Subantarctic Front, and may explain recently observed foraging behaviours of southern elephant seals. Regression models indicated a close relationship between sea surface temperature and mean volume backscatter, with significantly elevated backscatter in the subtropical convergence zone. The heterogeneous distribution of scattering layer biota may have implications for predator foraging and carbon cycling in the Indian Ocean. (ii) Acoustic surveys revealed diverse interactions between SLs, aggregations and topography around islands as well as shallow ( < 200m) and intermediate (200-800m) seamounts at spatial scales from 1 to 100 km. Epi-and mesopelagic backscatter was increased around reefs and banks of the Chagos archipelago, indicating connectivity between oceanic and neritic systems. SWIO seamounts harboured summit-associated aggregations, but the distributions of surrounding SLs did not follow a general pattern. Downstream SL depletion was observed in one location and combined with stomach content analyses, provides an insight into the mechanics of prey flux between open-ocean and seamount ecosystems. (iii) A mitochondrial marker was used to assess the population structure and demography of the hatchetfish Argyropelecus aculeatus in the SWIO. The results are suggestive of a single, well-connected population and indicate a recent population expansion around 0.14 million years ago. This highlights that even highly abundant mesopelagic populations are vulnerable to global climatic changes. Dispersal and recruitment are key ecological processes structuring seamount communities and are directly relevant for the management of exploited populations. Genetic barcoding was evaluated as a means to identify cryptic larval specimens of eels (leptocephali) and spiny lobsters (phyllosomata). Identification success was limited, but indicated the presence of 3-4 phyllosoma clades and 5-6 leptocephalus clades along the SWIR.

La période juvénile d’espèces longévives demeure peu connue malgré son importance pour la démographie et la conservation des populations. L’objectif de cette thèse a été d’étudier le comportement de dispersion et de nourrissage de 52 juvéniles de trois espèces de prédateurs marins plongeurs des Terres Australes et Antarctiques Françaises (les manchots royaux, les manchots empereurs et les éléphants de mer du Sud) pendant quasiment 1 an après leur indépendance. L’approche a été basée sur l’utilisation de balises retransmettant en direct la localisation et des données de plongée. Les juvéniles de ces trois espèces présentèrent des dispersions sur de très grandes distances dans l’Océan Austral, avec au départ des composantes d‘orientation semblant en partie innées. Le rôle des courants océaniques et des zones frontales est apparu important. Les juvéniles montrèrent aussi une ségrégation spatiale prononcée avec les adultes. Les juvéniles présentèrent d‘impressionnantes capacités de plongée seulement quelques jours après leur départ. Cependant, si leurs capacités de plongée et d‘acquisition de nourriture augmentèrent progressivement avec le temps, elles n‘atteignirent jamais totalement les capacités des adultes. Certains juvéniles ne parvinrent pas à augmenter ces capacités alors que leur environnement devint moins favorable et apparemment décédèrent en mer, vraisemblablement par inanition. La première année en mer apparait alors comme une phase critique puisqu'une mortalité apparente fut observée pour chaque espèce. Cette thèse apporte des éléments de compréhension nouveaux sur l’ontogenèse de la dispersion et de la recherche alimentaire des prédateurs marins plongeurs. / The juvenile phase of long lived-species is poorly understood despite its critical importance for the future of animal populations. Thanks to new bio-technologies, in this thesis we managed to monitor the ontogeny of foraging behaviour in 52 juveniles from 3 deep-diving marine predator species (king penguins, emperor penguins and southern elephant seals) in the French Southern territories over the first year after their independence. The juveniles of these 3 species showed a very large dispersion range over huge distances in the Southern Ocean. Their dispersion was characterized at departure by partially innate behaviour in their orientation preferences. Juveniles showed a strong dependency to the local oceanic currents orientation and frontal zones. More, they showed a spatial segregation with adults. Juveniles were quickly able to dive very deep. Their diving and foraging skills increased progressively with time. However, juveniles never completely reached the efficiency of adults, even after one year at sea. Some juveniles did not manage to increase their foraging skills while their environment became less productive; these juveniles may have died at sea, probably because of starvation. The first year at sea appears thus to be critical for the 3 studied species, as substantial mortality occurred in each case. This thesis presents new information about the ontogeny of dispersion and the foraging behaviour in marine deep-diving predators.

Du fait de l’isolement géographique de l’océan austral et des conditions météorologiques qui y règnent, la collecte de données océanographiques par les moyens conventionnels est particulièrement couteuse dans cette région du globe. Pour pallier à ces difficultés, l’utilisation d’enregistreurs électroniques embarqués sur des prédateurs marins, et notamment sur les éléphants de mer austraux, s’est révélée être une approche intéressante. Les femelles éléphants de mer s’alimentent en grande partie de petits poissons méso-pélagiques bioluminescents, les myctophidés. Leur forte abondance et leur comportement de migration nycthémérale confèrent à ces organismes un rôle écologique de première importance dans l’océan austral. Cependant, la distribution spatiale des proies de l’éléphant de mer, et les processus physiques et biologiques qui influent sur la dynamique de cette distribution sont encore mal connus. Cette thèse se propose d’enquêter sur ces sujets à partir des données à haute fréquence d’échantillonnage collectées par des femelles éléphants de mer. L’analyse du comportement de plongée des femelles éléphants de mer, en relation avec les variations du taux de rencontre de proie dont les données d’accélération permettent d'avoir une estimation, est au cœur des différents travaux développés dans cette thèse. Les résultats obtenus suggèrent notamment, (1) une diminution de l’abondance des proies avec la profondeur ainsi qu’une homogénéisation de leur distribution, (2) une distribution en couches de cette ressource, (3) l’intervention de contraintes verticales délimitant l’étendue verticale de ces couches et ainsi capable de moduler leur densité, (4) au sein des couches, une dispersion relativement importante des proies en comparaison de la portée des capacités de perception du prédateur, et enfin (5) un rôle significatif des tourbillons méso-échelle et de leur bordure sur la structuration de la distribution des ressources alimentaires de l’éléphant de mer durant l’été austral. / Because of the remoteness and harsh meteorological conditions of the southern ocean, data sampling is more costly in this area. Use of electronic devices attached to marine predators (Bio-logging), such as southern elephant seals, has emerged as an interesting approach to cope with this problem. Female southern elephant seals primarily feed on small bioluminescent meso-pelagic fishes called myctophids. Because of their large abundance and of their diel vertical migration behaviour, these organisms have a major ecological importance in the southern ocean. However, the spatial distribution of the elephant seals prey, as well as the bio-physical processes affecting the dynamics of this distribution, are still poorly known. This thesis intends to investigate this issue using high sampling frequency bio-logging data collected by female southern elephant seals. This work is based on the analysis of elephant seals diving behaviour in relation to changes in the occurrence of prey encounter events detected from acceleration data. Our results suggest that (1) prey abundance decreases with depth and that their distribution tend to standardize, (2) prey are distributed into layers, (3) vertical constraints could modulate the prey density by acting on the vertical spread of these layers, (4) prey items are well dispersed in comparison to the perception range of elephant seals, and finally (5) that meso-scale eddies, notably their edges, play a structuring role in the prey distribution during the austral summer.