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Thesis (Ph. D. in Cell and Developmental Biology)--Vanderbilt University, Dec. 2008. / Title from title screen. Includes bibliographical references.

Biomedical image processing is a very important research area. Image analysis is one of the most important techniques in studies related to heart functions. The clinical assessment of LV function is very important to evaluate the heart function for patients or suspected heart disease sufferers. 2D echocardiography allows us to study the dynamic analysis of the heart which results in obtaining the quantitative and qualitative analysis of the LV. Cardiac function quantitative analysis depends on the heart’s shape characteristics like the enclosed area and heart wall thickness. The segmentation of medical images and obtaining the traces of the LV boundaries is an essential procedure to get the quantitative and qualitative analysis. Yet, in clinical procedure, this task depends on manual tracing which is slow, tedious and time consuming job. Hence, automating this clinical procedure during the cardiac cycle is of great importance. The aim of this thesis is to automate the manual process of detecting and tracking the LV boundaries of 2D echocardiographic image sequence. Instead of depending only on the imaging based techniques, the designed and implemented framework utilizes the LV mechanics beside the imaging based techniques. When it comes to information extraction from patterns which have been classified, it has been proved that the different contour detection methods complement each other. As a result, efficient combination of different contour detectors is expected to achieve better contour detection than if only one detector is used. This combination of contour detectors produces incremental gains in overall performance. In the first framework, the detection and tracking are accomplished by employing the extended Kalman filter framework to combine the contours estimated by the biomechanical model and the contours extracted using the deformable models. An alternative framework is used by employing averaging fusion followed by level set method. A gold standard is created from three manual outlines and utilized in the experimental results to evaluate the automated results. The tracking and segmentation of LV during the cardiac cycle was accomplished successfully in all cases. The results showed limits of agreement for an average perpendicular distance of 1.277 ±0.252 mm versus the created gold standard. This proved that this framework achieved better performance in tracking and segmenting the LV through the cardiac cycle.

L'acide rétinoïque (AR), métabolite actif de la vitamine A, est une molécule qui a une fonction pléiotropique au cours du développement embryonnaire dont l'excès ou le déficit entraine diverses pathologies cardiaques. Les mutants perte de fonction pour l'enzyme de synthèse de l'AR, la rétinaldéhyde déshydrogénase 2 Raldh2), possèdent de multiples défauts cardiaques. Ces embryons meurent vers le neuvième jour de développement mais cette létalité peut être sauvée en ajoutant de l'AR dans la nourriturre des femelles en gestation. Les mutants Raldh2-/- sauvés ont un Tronc Artériel Commun (TAC) qui est un vaisseau unique au pôle artériel du coeur à la place de l'AO et du TP. Le but de ma thèse a été de comprendre les mécanismes moléculaires et cellulaires conduisant à ce TAC. Ce TAC est à dominance aortique et les connexions des artères coronaires au TAC sont malpositionnées. Nos résultats montrent que la réduction de la longueur de la VE des mutants Raldh2-/- sauvés est associée à une hypoplasie du mésoderme pharyngé. Les mutants Raldh2-/- sauvés possèdent une altération de l'expression de gènes essentiels pour l'élongation de la VE, la rotation de la VE est aussi affectée . Les cellules de la crête neurale cardiaque (CCNC) sont nécessaires pour la septation de la VE et leur contribution à la VE n'est pas altérée dans les mutants Raldh2-/- sauvés. En revanche, elles sont anormalement localisées à proximité du myocarde et anormalement orientées perpendiculairement au futur plan de septation. Cette délocalisation des CCNC est corrélée à une augmentation du processus de transition endothélio-mésenchymateux. L'AR est donc une molécule essentielle pour la morphogenèse de la VE. / Retinoic acid (RA), the active metabolite of vitamin A, is a molecule with pleiotropic functions during development. An excess or deficiency of RA during development leads to various cardiac pathologies. Loss-of-function of retinaldehyde dehydrogenase 2 (Raldh2), the enzyme that synthesises RA, results in various cardiac defects. Mutant embryos die at around the ninth day of embryonic development (E9), but this lethality can be rescued by supplementing the gestating female's diet with RA. RA-rescued Raldh2-/- displayed a persistent truncus arteriosus (PTA), a unique artery at the arterial pole of the heart, rather than separate aorta and pulmonary trunk. The aim of my thesis was to understand the molecular and cellular mechanisms leading to PTA. This PTA is predominantly an aortic phenotype, associated with malpositioned of the coronary artery connections. Our results show that the reduced length of RA-rescued Raldh2-/- OFTs was linked to pharyngeal mesoderm hypoplasia. RA-rescued Raldh2-/- mutants expressed altered levels of several genes that are essential for OFT elongation and OFT rotation was also affected. Cardiac neural crest (CNC) cells play an essential role in OFT septation and their contribution to the OFT was not altered in RA-rescued Raldh2-/- mutants. However, CNC cells display abnormal characteristics, and are found in close proximity to the myocardium, oriented perpendicularly to the plane of septation. This mis-location of the CNC cells was associated with increased endothelial-to-mesenchymal transition (EMT). Accordingly, an increased contribution of endocardial EMT to valve mesenchyme. In conclusion, RA is essential for OFT morphogenesis.

Ultraljud är en metod som kan användas för att bedöma hjärtfunktionen, en så kallad ekokardiografi undersökning. Ekokardiografi är en svårbemästrad metod som är mycket beroende av handhavaren. Tvådimensionell ekokardiografi är en etablerad metod som används inom klinisk diagnostik. Idag är även tredimensionella registreringar möjliga att utföra, men bör endast utföras av en erfaren handhavare och på patienter med adekvat bildkvalitet. Syftet med studien var att jämföra vänsterkammarvolym och ejektionsfraktion mellan tvådimensionell och tredimensionell ekokardiografi. Även intraobservatörsvariation hos två oerfarna handhavare har granskats.  I studien inkluderades 46 försökspersoner med normal sinusrytm och inga kända hjärt- och kärlsjukdomar. Vänsterkammarvolym och ejektionsfraktion beräknades med hjälp av Siemens automatiska funktioner eSie Left Heart och eSie LVA. Studiens resultat visade att det föreligger det en signifikant skillnad mellan tvådimensionell- och tredimensionell ekokardiografi för både vänsterkammarvolym och ejektionsfraktion. De tredimensionella mätningarna gav en större vänsterkammarvolym men mindre ejektionsfraktion jämfört med de tvådimensionella mätningarna. Intraobservatörsvariationen för tredimensionell ekokardiografi gav en större standardavvikelse för vänsterkammarvolym hos båda handhavarna jämfört med tvådimensionell ekokardiografi. För ejektionsfraktionen fick handhavare 1 samma standardavvikelse mellan metoderna medan handhavare 2 fick en större standardavvikelse i tredimensionell ekokardiografi. / Ultrasound is a method that can be used to assess heart function, so-called echocardiography. The method is difficult and highly operator dependent. Two-dimensional echocardiography is an established method in clinical diagnostics. Three-dimensional registrations are possible to perform, but should only be performed by an experienced operator and on patients with adequate image quality. The aim of this study was to compare left ventricular volume and ejection fraction between two-dimensional and three-dimensional echocardiography. Intraobserver variation in two inexperienced operators has also been studied. The study included 46 subjects with normal sinus rhythm and no known cardiovascular diseases. Left ventricular volume and ejection fraction were calculated using Siemens automatic functions, eSie Left Heart and eSie LVA. Based on the result, there is a significant difference between two-dimensional and three-dimensional echocardiography for both left ventricular volume and ejection fraction. The three-dimensional measurements yielded a greater left ventricular volume but a smaller ejection fraction compared to the two-dimensional measurements. The intraobserver variation for three-dimensional echocardiography yielded a greater standard deviation for left ventricular volume in both operators compared to two-dimensional echocardiography. For ejection fraction, operator 1 obtained the same standard deviation between methods, while operator 2 obtained a greater standard deviation in three-dimensional echocardiography.

No infarto, o remodelamento da região ventricular remota tem sido pouco examinado. Previamente, observamos que a redução da pressão de perfusão coronariana (PPC) associa-se ao aparecimento de fibrose subendocárdica. O objetivo do presente estudo foi investigar o papel da PPC no remodelamento e na função ventricular esquerda após o infarto. Medidas hemodinâmicas foram determinadas em ratos Wistar imediatamente após o infarto (IM) ou cirurgia fictícia (SH) e ao final dos seguimentos de 1, 3, 7, e 28 dias. Cortes teciduais do coração foram submetidos a coloração com HE, Sirius red, e a imunohistoquímica para a-actina. Duas regiões distintas do ventrículo esquerdo remotas ao infarto foram examinadas: subendocárdio (SE) e interstício (INT). A necrose de miócitos, a infiltração leucocitária e de miofibroblastos, e a fração de volume do colágeno foram determinadas. Comparados com SH, os grupos IM apresentaram menor PPC e disfunção sistólica e diastólica do ventrículo esquerdo. A necrose foi evidente em SE no dia 1. A inflamação e a fibroplasia ocorreram predominantemente em SE até o dia 7. A fibrose foi restrita a SE e evidente desde o dia 3. Em INT, a inflamação ocorreu predominantemente nos dias 1 e 3, mas em menor grau comparada a SE. A queda da PPC associou-se à dilatação progressiva do ventrículo esquerdo. Em SE, a PPC relacionou-se inversamente com a necrose (r =- 0,65, p = 0,003, no dia 1), com a inflamação (r = -0,76, p < 0,001, no dia 1), com a fibroplasia (r = -0,47, p = 0,04, no dia 7) e com a fibrose (r = -0,83, p < 0,001, no dia 28). A necrose no dia 1, a inflamação nos dias 3 e 7 e a fibroplasia no dia 7 relacionaram-se inversamente com a função do ventrículo esquerdo. A PPC é um fator determinante da integridade de SE e interfere com o remodelamento e a função do ventrículo esquerdo. / Left ventricular (LV) subendocardial remodeling has been poorly investigated after myocardial infarction. Previously, we have demonstrated that low coronary driving pressure (CDP) early in the course of infarction was associated with the subsequent development of subendocardial fibrosis. The present study aimed at the investigation of the role of CDP in LV remodeling and function following infarction. Hemodynamics were determined in Wistar rats immediately after infarct surgery (MI group) or sham (SH group) and at days 1, 3, 7, and 28. Heart tissue sections were stained with HE, Sirius red and immunostained for a- actin. Two distinct LV regions remote to MI were examined: subendocardium (SE) and interstitium (INT). Myocyte necrosis, leukocyte and myofibroblast infiltration, and collagen volume fraction were determined. Compared with SH, MI groups showed lower CDP and LV systolic and diastolic dysfunction. Necrosis was evident in SE at day 1. Inflammation and fibroplasia occurred predominantly in SE as far as day 7. Fibrosis was restricted to SE and was evident beginning from day 3. Inflammation occurred predominantly at days 1 and 3 in INT, but at a lower extent than in SE. CDP fall was associated with progressive LV dilatation. In SE, CDP correlated inversely with necrosis (r = -0.65, p=0.003, at day 1), inflammation (r = -0.76, p < 0.001, at day 1), fibroplasia (r = -0.47, p = 0.04, at day 7) and fibrosis (r = -0.83, p < 0.001, at day 28). Necrosis at day 1, inflammation at days 3 and 7, and fibroplasia at day 7 correlated inversely with LV function. CDP is a key factor to SE integrity following infarction and interferes with LV remodeling and function.

No infarto, o remodelamento da região ventricular remota tem sido pouco examinado. Previamente, observamos que a redução da pressão de perfusão coronariana (PPC) associa-se ao aparecimento de fibrose subendocárdica. O objetivo do presente estudo foi investigar o papel da PPC no remodelamento e na função ventricular esquerda após o infarto. Medidas hemodinâmicas foram determinadas em ratos Wistar imediatamente após o infarto (IM) ou cirurgia fictícia (SH) e ao final dos seguimentos de 1, 3, 7, e 28 dias. Cortes teciduais do coração foram submetidos a coloração com HE, Sirius red, e a imunohistoquímica para a-actina. Duas regiões distintas do ventrículo esquerdo remotas ao infarto foram examinadas: subendocárdio (SE) e interstício (INT). A necrose de miócitos, a infiltração leucocitária e de miofibroblastos, e a fração de volume do colágeno foram determinadas. Comparados com SH, os grupos IM apresentaram menor PPC e disfunção sistólica e diastólica do ventrículo esquerdo. A necrose foi evidente em SE no dia 1. A inflamação e a fibroplasia ocorreram predominantemente em SE até o dia 7. A fibrose foi restrita a SE e evidente desde o dia 3. Em INT, a inflamação ocorreu predominantemente nos dias 1 e 3, mas em menor grau comparada a SE. A queda da PPC associou-se à dilatação progressiva do ventrículo esquerdo. Em SE, a PPC relacionou-se inversamente com a necrose (r =- 0,65, p = 0,003, no dia 1), com a inflamação (r = -0,76, p < 0,001, no dia 1), com a fibroplasia (r = -0,47, p = 0,04, no dia 7) e com a fibrose (r = -0,83, p < 0,001, no dia 28). A necrose no dia 1, a inflamação nos dias 3 e 7 e a fibroplasia no dia 7 relacionaram-se inversamente com a função do ventrículo esquerdo. A PPC é um fator determinante da integridade de SE e interfere com o remodelamento e a função do ventrículo esquerdo. / Left ventricular (LV) subendocardial remodeling has been poorly investigated after myocardial infarction. Previously, we have demonstrated that low coronary driving pressure (CDP) early in the course of infarction was associated with the subsequent development of subendocardial fibrosis. The present study aimed at the investigation of the role of CDP in LV remodeling and function following infarction. Hemodynamics were determined in Wistar rats immediately after infarct surgery (MI group) or sham (SH group) and at days 1, 3, 7, and 28. Heart tissue sections were stained with HE, Sirius red and immunostained for a- actin. Two distinct LV regions remote to MI were examined: subendocardium (SE) and interstitium (INT). Myocyte necrosis, leukocyte and myofibroblast infiltration, and collagen volume fraction were determined. Compared with SH, MI groups showed lower CDP and LV systolic and diastolic dysfunction. Necrosis was evident in SE at day 1. Inflammation and fibroplasia occurred predominantly in SE as far as day 7. Fibrosis was restricted to SE and was evident beginning from day 3. Inflammation occurred predominantly at days 1 and 3 in INT, but at a lower extent than in SE. CDP fall was associated with progressive LV dilatation. In SE, CDP correlated inversely with necrosis (r = -0.65, p=0.003, at day 1), inflammation (r = -0.76, p < 0.001, at day 1), fibroplasia (r = -0.47, p = 0.04, at day 7) and fibrosis (r = -0.83, p < 0.001, at day 28). Necrosis at day 1, inflammation at days 3 and 7, and fibroplasia at day 7 correlated inversely with LV function. CDP is a key factor to SE integrity following infarction and interferes with LV remodeling and function.

Indiana University-Purdue University Indianapolis (IUPUI) / The heart is a complex organ that is composed of numerous cell types, which must integrate their programs for proper specification, differentiation, and cardiac morphogenesis. During cardiac development the basic helix-loop-helix transcription factor Hand2 is dynamically expressed within the endocardium and extra-cardiac lineages such as the epicardium, cardiac neural crest cells (cNCCs), and NCC derived components of the autonomic nervous system. To investigate Hand2 function within these populations we utilized multiple murine Hand2 Conditional Knockout (H2CKO) genetic models. These studies establish for the first time a functional requirement for Hand2 within the endocardium, as several distinct phenotypes including hypotrabeculation, tricuspid atresia, aberrant septation, and precocious coronary development are observed in endocardial H2CKOs. Molecular analyses reveal that endocardial Hand2 functions within the Notch signaling pathway to regulate expression of Nrg1, which encodes a crucial secreted growth factor. Furthermore, we demonstrate that Notch signaling regulates coronary angiogenesis via Hand2 mediated modulation of Vegf signaling. Hand2 is strongly expressed within midgestation NCC and endocardium derived cardiac cushion mesenchyme. To ascertain the function of Hand2 within these cells we employed the Periostin Cre (Postn-Cre), which marks cushion mesenchyme, a small subset of the epicardium, and components of the autonomic nervous system, to conditionally ablate Hand2. We find that Postn-Cre H2CKOs die shortly after birth despite a lack of cardiac structural defects. Gene expression analyses demonstrate that Postn-Cre ablates Hand2 from the adrenal medulla, causing downregulation of Dopamine Beta Hydroxylase (Dbh), a gene encoding a crucial catecholaminergic biosynthetic enzyme. Electrocardiograms demonstrate that 3-day postnatal Postn-Cre H2CKO pups exhibit significantly slower heart rates than control littermates. In conjunction with the aforementioned gene expression analyses, these results indicate that loss of Hand2 function within the adrenal medulla results in a catecholamine deficiency and subsequent heart failure.

Le cœur des vertébrés est un organe modulaire qui requiert le " patterning " complexe des champs morphogénétiques cardiogènes et la convergence coordonnée des diverses sous-populations de progéniteurs cardiogéniques. Au moins 7 facteurs de transcription de la famille T-box coopèrent au sein de ces nombreuses sous-populations de progéniteurs cardiogéniques afin de réguler la morphogenèse et l’agencement de multiples structures le long de l’ébauche cardiaque, ce qui explique que les mutations humaines de ces gènes engendrent diverses malformations congénitales cardiaques (MCCs). L’un de ces gènes T-box, Tbx5, dont l’haploinsuffisance génère le syndrome de Holt-Oram (SHO), intervient dans une grande variété de réseaux de régulation géniques (RRGs) qui orchestrent la morphogenèse des oreillettes, du ventricule gauche, de la valve mitrale, des septums inter-auriculaire et inter-ventriculaire, ainsi que du système de conduction cardiaque. La diversité des RRGs impliqués dans la formation de ces structures cardiaques suggère que Tbx5 détient une profusion de fonctions qui ne seront identifiables qu’en répertoriant ses activités moléculaires dans chaque lignée cardiaque examinée isolément. Afin d’aborder cette problématique, une ablation génétique de Tbx5 dans l’endocarde a été réalisée. Cette expérience a démontré le rôle crucial de Tbx5 dans la survie des cellules endocardiques bordant le septum primum et des cardiomyocytes au sein de cette structure embryonnaire qui contribuera à la morphogenèse du septum inter-auriculaire. En outre, cette étude a révélé l’existence d’une communication croisée entre la sous-population de cellules endocardiques Tbx5+ et le myocarde au niveau du septum primum, afin d’assurer la survie des cardiomyocytes, et ultimement de garantir la maturation du septum inter-auriculaire. Nos résultats confirment aussi l’importance de l’interdépendance génétique (Tbx5 et Gata4 ainsi que Tbx5 et Nos3) entre différents loci dans la morphogenèse de la cloison inter-auriculaire, et particulièrement de l’influence que peut avoir l’environnement sur la pénétrance et l’expressivité des communications inter-auriculaires (CIAs) dans le SHO. En outre, puisque les fonctions d’un gène dépendent ordinairement des différents isoformes qu’il peut générer, une deuxième étude a focalisé davantage sur l’aspect transcriptionnel de Tbx5. Cette approche a mené à la découverte de 6 transcrits alternatifs exhibant des fonctions à la fois communes et divergentes. La caractérisation de 2 de ces isoformes a révélé le rôle de l’isoforme long (Tbx5_v1) dans la régulation de la croissance des cardiomyocytes durant la cardiogénèse, tandis que l’isoforme court (Tbx5_v2), préférentiellement exprimé dans le cœur mature, réprime la croissance cellulaire. Il est donc entièrement concevable que les mutations de TBX5 entraînant une troncation de la région C-terminale accroissent la concentration d’une protéine mutée qui, à l’instar de Tbx5_v2, interfère avec la croissance de certaines structures cardiaques. En revanche, la divergence de fonctions de ces isoformes, caractérisée par les disparités de localisation subcellulaire et de d’interaction avec d’autres cofacteurs cardiaques, suggère que les mutations affectant davantage un isoforme favoriseraient l’émergence d’un type particulier de MCC. Finalement, un dernier objectif était d’identifier le ou les mécanisme(s) moléculaire(s) par le(s)quel(s) Tbx5 régule son principal gène cible, Nppa, et d’en extraire les indices qui éclairciraient sa fonction transcriptionnelle. Cet objectif nécessitait dans un premier lieu d’identifier les différents modules cis-régulateurs (MCRs) coordonnant la régulation transcriptionnelle de Nppa et Nppb, deux gènes natriurétiques dont l’organisation en tandem et le profil d’expression durant la cardiogénèse sont conservés dans la majorité des vertébrés. L’approche d’empreinte phylogénétique employée pour scanner le locus Nppb/Nppa a permis d’identifier trois MCRs conservés entre diverses espèces de mammifères, dont un (US3) est spécifique aux euthériens. Cette étude a corroboré que la régulation de l’expression du tandem génique Nppb/Nppa requérait l’activité transcriptionnelle d’enhancers en complément aux promoteurs de Nppa et Nppb. La concordance quasiment parfaite entre les profils d’expression de Tbx5 et de ces deux gènes natriurétiques chez les mammifères, suggère que le gradient d’expression ventriculaire de Tbx5 est interprété par le recrutement de ce facteur au niveau des différents enhancers identifiés. En somme, les études présentées dans cette thèse ont permis de clarifier la profusion de fonctions cardiaques que possède Tbx5. Certaines de ces fonctions émanent de l’épissage alternatif de Tbx5, qui favorise la synthèse d’isoformes dotés de propriétés spécifiques. Les diverses interactions combinatoires entre ces isoformes et d’autres facteurs cardiaques au sein des diverses sous-populations de progéniteurs cardiogènes contribuent à l’émergence de RRGs cardiaques divergents. / The vertebrate heart is a modular organ, which requires the complex patterning of the morphogenetic heart fields and the coordinated convergence of the diverse subpopulations of cardiogenic progenitors. At least 7 transcription factors of the T-box family cooperate within these numerous subpopulations of cardiogenic progenitors to regulate the morphogenesis and the layout of multiple structures along the primordial heart tube, which explains that the human mutations of these genes induce various congenital heart defects (CHDs). One of these T-box genes, Tbx5, whose haploinsufficiency generates the Holt-Oram syndrome (HOS), intervenes in a wide variety of gene regulatory networks (GRNs) that orchestrate the morphogenesis of the atria, the left ventricle, the mitral valve, the inter-atrial and inter-ventricular septa, as well as the cardiac conduction system. The diversity of GRNs involved in the formation of these cardiac structures suggests that Tbx5 holds a profusion of functions which will be identifiable only by indexing its molecular activities in each separately examined cardiac lineage. To address this problem, a conditional knockout of Tbx5 in the endocardium was generated. This experiment demonstrated a crucial role of Tbx5 in the survival of the endocardial cells lining the septum primum and the cardiomyocytes within this embryonic structure, which will contribute to the morphogenesis of the inter-atrial septum. Moreover, this study revealed a crosstalk between the Tbx5-positive endocardial cells subpopulation and the myocardium at the level of the septum primum to ensure the survival of cardiomyocytes, and ultimately to guarantee the maturation of the inter-atrial septum. Our results also confirmed the importance of genetic interdependence (Tbx5 and Gata4 as well as Tbx5 and Nos3) between different loci in the morphogenesis of the inter-atrial septum, and particularly the influence that the environment can have on the penetrance and the expressivity of atrial septal defects (ASDs) in the HOS. Besides, since the functions of a gene usually depend on the different isoforms it can generate, a second study focused more on the transcriptional aspect of Tbx5. This approach led to the discovery of 6 alternative transcripts exhibiting both common and specific functions. The characterization of 2 of these isoforms revealed the role of the long isoform (Tbx5_v1) in the regulation of cardiomyocytes growth during cardiogenesis, whereas the short isoform (Tbx5_v2), preferentially expressed in the mature heart, represses cell growth. It is thus entirely conceivable that TBX5 mutations leading to a C-terminal truncation increase the concentration of a mutated protein, which, like Tbx5_v2, interferes with the growth of certain cardiac structures. On the other hand, the divergence of functions of these isoforms, characterized by the disparities of subcellular localization and interaction with other cardiac cofactors, suggests that mutations affecting more one isoform would favor the emergence of a particular type of CHD. Finally, a last objective was to identify one or several molecular mechanism(s) by which Tbx5 regulates its main target gene, Nppa, and to extract clues that might clarify its transcriptional function. This objective required in a first place to identify the various cis-regulatory modules (CRMs) coordinating the transcriptional regulation of Nppa and Nppb, two natriuretic genes whose tandem organization and expression pattern during cardiogenesis are preserved in most vertebrates. The phylogenetic footprint approach employed to scan the Nppb/Nppa locus allowed the identification of three CRMs evolutionary conserved between different mammals species, one of which (US3) is specific to eutherians. This study confirmed that the regulation of the tandem genes Nppb/Nppa required the transcriptional activity of enhancers in complement to Nppa and Nppb promoters. The almost perfect concordance between the expression profiles of Tbx5 and these two natriuretic genes in mammals, suggests that the ventricular expression gradient of Tbx5 is interpreted by the recruitment of this factor to the identified enhancers. Altogether, the studies presented in this thesis allowed clarifying the profusion of Tbx5 cardiac functions. Some of these functions emanate from the alternative splicing of Tbx5, which favors the synthesis of isoforms endowed with specific properties. The diverse combinatorial interactions between these isoforms and other cardiac factors within the various cardiogenic progenitor subpopulations contribute to the emergence of distinct cardiac RRGs.

Le cœur des vertébrés est un organe modulaire qui requiert le " patterning " complexe des champs morphogénétiques cardiogènes et la convergence coordonnée des diverses sous-populations de progéniteurs cardiogéniques. Au moins 7 facteurs de transcription de la famille T-box coopèrent au sein de ces nombreuses sous-populations de progéniteurs cardiogéniques afin de réguler la morphogenèse et l’agencement de multiples structures le long de l’ébauche cardiaque, ce qui explique que les mutations humaines de ces gènes engendrent diverses malformations congénitales cardiaques (MCCs). L’un de ces gènes T-box, Tbx5, dont l’haploinsuffisance génère le syndrome de Holt-Oram (SHO), intervient dans une grande variété de réseaux de régulation géniques (RRGs) qui orchestrent la morphogenèse des oreillettes, du ventricule gauche, de la valve mitrale, des septums inter-auriculaire et inter-ventriculaire, ainsi que du système de conduction cardiaque. La diversité des RRGs impliqués dans la formation de ces structures cardiaques suggère que Tbx5 détient une profusion de fonctions qui ne seront identifiables qu’en répertoriant ses activités moléculaires dans chaque lignée cardiaque examinée isolément. Afin d’aborder cette problématique, une ablation génétique de Tbx5 dans l’endocarde a été réalisée. Cette expérience a démontré le rôle crucial de Tbx5 dans la survie des cellules endocardiques bordant le septum primum et des cardiomyocytes au sein de cette structure embryonnaire qui contribuera à la morphogenèse du septum inter-auriculaire. En outre, cette étude a révélé l’existence d’une communication croisée entre la sous-population de cellules endocardiques Tbx5+ et le myocarde au niveau du septum primum, afin d’assurer la survie des cardiomyocytes, et ultimement de garantir la maturation du septum inter-auriculaire. Nos résultats confirment aussi l’importance de l’interdépendance génétique (Tbx5 et Gata4 ainsi que Tbx5 et Nos3) entre différents loci dans la morphogenèse de la cloison inter-auriculaire, et particulièrement de l’influence que peut avoir l’environnement sur la pénétrance et l’expressivité des communications inter-auriculaires (CIAs) dans le SHO. En outre, puisque les fonctions d’un gène dépendent ordinairement des différents isoformes qu’il peut générer, une deuxième étude a focalisé davantage sur l’aspect transcriptionnel de Tbx5. Cette approche a mené à la découverte de 6 transcrits alternatifs exhibant des fonctions à la fois communes et divergentes. La caractérisation de 2 de ces isoformes a révélé le rôle de l’isoforme long (Tbx5_v1) dans la régulation de la croissance des cardiomyocytes durant la cardiogénèse, tandis que l’isoforme court (Tbx5_v2), préférentiellement exprimé dans le cœur mature, réprime la croissance cellulaire. Il est donc entièrement concevable que les mutations de TBX5 entraînant une troncation de la région C-terminale accroissent la concentration d’une protéine mutée qui, à l’instar de Tbx5_v2, interfère avec la croissance de certaines structures cardiaques. En revanche, la divergence de fonctions de ces isoformes, caractérisée par les disparités de localisation subcellulaire et de d’interaction avec d’autres cofacteurs cardiaques, suggère que les mutations affectant davantage un isoforme favoriseraient l’émergence d’un type particulier de MCC. Finalement, un dernier objectif était d’identifier le ou les mécanisme(s) moléculaire(s) par le(s)quel(s) Tbx5 régule son principal gène cible, Nppa, et d’en extraire les indices qui éclairciraient sa fonction transcriptionnelle. Cet objectif nécessitait dans un premier lieu d’identifier les différents modules cis-régulateurs (MCRs) coordonnant la régulation transcriptionnelle de Nppa et Nppb, deux gènes natriurétiques dont l’organisation en tandem et le profil d’expression durant la cardiogénèse sont conservés dans la majorité des vertébrés. L’approche d’empreinte phylogénétique employée pour scanner le locus Nppb/Nppa a permis d’identifier trois MCRs conservés entre diverses espèces de mammifères, dont un (US3) est spécifique aux euthériens. Cette étude a corroboré que la régulation de l’expression du tandem génique Nppb/Nppa requérait l’activité transcriptionnelle d’enhancers en complément aux promoteurs de Nppa et Nppb. La concordance quasiment parfaite entre les profils d’expression de Tbx5 et de ces deux gènes natriurétiques chez les mammifères, suggère que le gradient d’expression ventriculaire de Tbx5 est interprété par le recrutement de ce facteur au niveau des différents enhancers identifiés. En somme, les études présentées dans cette thèse ont permis de clarifier la profusion de fonctions cardiaques que possède Tbx5. Certaines de ces fonctions émanent de l’épissage alternatif de Tbx5, qui favorise la synthèse d’isoformes dotés de propriétés spécifiques. Les diverses interactions combinatoires entre ces isoformes et d’autres facteurs cardiaques au sein des diverses sous-populations de progéniteurs cardiogènes contribuent à l’émergence de RRGs cardiaques divergents. / The vertebrate heart is a modular organ, which requires the complex patterning of the morphogenetic heart fields and the coordinated convergence of the diverse subpopulations of cardiogenic progenitors. At least 7 transcription factors of the T-box family cooperate within these numerous subpopulations of cardiogenic progenitors to regulate the morphogenesis and the layout of multiple structures along the primordial heart tube, which explains that the human mutations of these genes induce various congenital heart defects (CHDs). One of these T-box genes, Tbx5, whose haploinsufficiency generates the Holt-Oram syndrome (HOS), intervenes in a wide variety of gene regulatory networks (GRNs) that orchestrate the morphogenesis of the atria, the left ventricle, the mitral valve, the inter-atrial and inter-ventricular septa, as well as the cardiac conduction system. The diversity of GRNs involved in the formation of these cardiac structures suggests that Tbx5 holds a profusion of functions which will be identifiable only by indexing its molecular activities in each separately examined cardiac lineage. To address this problem, a conditional knockout of Tbx5 in the endocardium was generated. This experiment demonstrated a crucial role of Tbx5 in the survival of the endocardial cells lining the septum primum and the cardiomyocytes within this embryonic structure, which will contribute to the morphogenesis of the inter-atrial septum. Moreover, this study revealed a crosstalk between the Tbx5-positive endocardial cells subpopulation and the myocardium at the level of the septum primum to ensure the survival of cardiomyocytes, and ultimately to guarantee the maturation of the inter-atrial septum. Our results also confirmed the importance of genetic interdependence (Tbx5 and Gata4 as well as Tbx5 and Nos3) between different loci in the morphogenesis of the inter-atrial septum, and particularly the influence that the environment can have on the penetrance and the expressivity of atrial septal defects (ASDs) in the HOS. Besides, since the functions of a gene usually depend on the different isoforms it can generate, a second study focused more on the transcriptional aspect of Tbx5. This approach led to the discovery of 6 alternative transcripts exhibiting both common and specific functions. The characterization of 2 of these isoforms revealed the role of the long isoform (Tbx5_v1) in the regulation of cardiomyocytes growth during cardiogenesis, whereas the short isoform (Tbx5_v2), preferentially expressed in the mature heart, represses cell growth. It is thus entirely conceivable that TBX5 mutations leading to a C-terminal truncation increase the concentration of a mutated protein, which, like Tbx5_v2, interferes with the growth of certain cardiac structures. On the other hand, the divergence of functions of these isoforms, characterized by the disparities of subcellular localization and interaction with other cardiac cofactors, suggests that mutations affecting more one isoform would favor the emergence of a particular type of CHD. Finally, a last objective was to identify one or several molecular mechanism(s) by which Tbx5 regulates its main target gene, Nppa, and to extract clues that might clarify its transcriptional function. This objective required in a first place to identify the various cis-regulatory modules (CRMs) coordinating the transcriptional regulation of Nppa and Nppb, two natriuretic genes whose tandem organization and expression pattern during cardiogenesis are preserved in most vertebrates. The phylogenetic footprint approach employed to scan the Nppb/Nppa locus allowed the identification of three CRMs evolutionary conserved between different mammals species, one of which (US3) is specific to eutherians. This study confirmed that the regulation of the tandem genes Nppb/Nppa required the transcriptional activity of enhancers in complement to Nppa and Nppb promoters. The almost perfect concordance between the expression profiles of Tbx5 and these two natriuretic genes in mammals, suggests that the ventricular expression gradient of Tbx5 is interpreted by the recruitment of this factor to the identified enhancers. Altogether, the studies presented in this thesis allowed clarifying the profusion of Tbx5 cardiac functions. Some of these functions emanate from the alternative splicing of Tbx5, which favors the synthesis of isoforms endowed with specific properties. The diverse combinatorial interactions between these isoforms and other cardiac factors within the various cardiogenic progenitor subpopulations contribute to the emergence of distinct cardiac RRGs.