Metal–organic materials (MOMs), a type of porous crystalline structure composed of organic ligands jointed with metal ions, have captured the interest of scientists as potentially useful in gas sorption applications. Some of the most crucial avenues of investigation are in H2 storage (for use as a clean burning fuel source) and CO2 capture and sequestration (to remove the greenhouse gas from the environment). A major advantage of MOMs for such applications is their high variability in terms of physical dimensions and chemical moieties, based on composition and synthesis conditions, making them potentially customizable for specific application if necessary structural characteristics are known. Computational experimentation is an important avenue for determining such specifications as it allows examination of gas/MOM interaction at the molecular level. In this dissertation a number of MOM structure are computationally studied in order to elucidate gas sorption mechanisms. These systems were probed by classical simulation using grand canonical Monte Carlo with a carefully chosen set of intermolecular interaction parameters. While the focus of this work is specifically H2 and CO2 sorptive behavior, the insights gained from simulation extend beyond these specific applications. Addressed first are a series of MOMs with rht topology, which possesses asymmetric copper paddle-wheels and easily functionalized linkers. Beginning with a prototypical structure and then branching out into more chemically interesting variants revealed surprising gas sorption behavior about the metal paddle-wheels (with a definite preference for one copper over its counterpart). A synthetic strategy for controlling the preferred open-metal sorption site through the inclusion of electron rich functionality in the linker bodies, was also revealed. An additional MOM with similar composition components, exhibiting zyg topology, also showed this metal preference effect on the asymmetric paddle-wheels. A second class of MOMs, composed of square-pillared grids and known as the SIFSIX series (due to the inclusion of SiF62− as pillaring units) was also examined. These structures have been shown excellent results for CO2 sorption making the elucidation of the sorptive mechanisms of great interest. Six different structures were examined, probing the effects of linker length, metal selection, and interpenitration of unbonded scaffolds. The nature of the CO2-MOM sorption interactions were revealed through simulation and provided insights regarding the synergistic effect of pore dimensions and SiF62− functionality for specifying specific behavior (i.e. high selectivity vs. high uptake). A final MOM, composed of Y3+ ions and chemically complex linkers, was also examined. Disorder in the crystallographic data (e.g. single atoms with multiple positions) indicated the coexistance of notably different unit cells in the same system. Nevertheless, simulations revealed favored sorption sites in conjunction with results from physical experimentation.

With the dwindling availability of petroleum, focus has shifted to renewable energy sources such as lignocellulosic biomass. Lignocellulosic biomass is composed of three main constituents, lignin, cellulose and hemicellulose. Due to the low value of cellulosic ethanol, utilization of the lignin component is necessary for the realization of an economically sustainable biorefinery model. Once depolymerized, lignin has the potential to replace petroleum-derived molecules used as bulk and specialty aromatic chemicals. Numerous lignin depolymerization strategies focus on cleavage of β-aryl ether linkages, usually at high temperatures and under reductive conditions. Alternatively, selective benzylic oxidation strategies have recently been explored for lignin and lignin models. In this work, heterogeneous catalytic methods using supported base metals and layered-double hydroxides were evaluated for the oxidation of lignin models both before and after benzylic oxidation. Additionally, by studying putative reaction intermediates, insights were gained into the mechanisms of oxidative fragmentation of the model compounds. Generally, it was found that after benzylic oxidation models were more susceptible to oxidative fragmentation. Indeed, several heterogeneous oxidation systems were found to convert lignin models to oxygenated aryl monomers (mainly benzoic acids and phenols) using inexpensive primary oxidants (i.e., hydrogen peroxide and molecular oxygen). Reactions were conducted at relatively mild temperatures and at low oxygen concentrations for the purpose of an easy transition to large-scale experiments. Finally, the catalytic systems that resulted in significant cleavage of lignin models were applied to a Kraft lignin. Oxidation of Kraft lignin resulted a mixture of products for which analytical data and increased solubility are consistent with interunit cleavage within the lignin macromolecule.

Beta-N-methylamino-L-alanine (BMAA) is a non-protein amino acid produced by many cyanobacteria, and thought to induce neurotoxic effects through excitotoxicity, contributing to neurodegenerative diseases such as Amyotrophic Lateral Sclerosis/Parkinsonism-dementia complex (ALS-PDC) and Alzheimer’s. The ubiquitous nature of cyanobacteria, and evidence of biomagnification through our food web, creates a dire need for the development of an analytical platform that will provide accurate identification and quantification of BMAA amounts in our ecosystem and potential food supply. The present study evaluated the ability of a MALDI-ToF-MS method to detect and quantify BMAA in a variety of biological matrices. Through validation procedures, it was demonstrated that this MALDI-ToF-MS method provided comparable data to currently accepted analytical methods, specifically LC-MS/MS. Further, the development of said method reduced sample preparation and data acquisition time (1-2 seconds per sample), while providing high throughput analysis and eliminating the need for derivatization, chromatographic separation, and modification of amino acids.

The occurrences of cyanotoxin and organic contaminants threaten drinking water sources and are a serious human health and environmental concern. The control of these problematic contaminants and the remediation of the associated contaminants are critical for ensuring safe drinking water to significant populations. Advanced oxidation processes (AOPs) have received considerable attention as a potential water treatment for various pollutants. In this dissertation, advanced oxidative degradation of four problematic water toxic contaminants (CYN, iopamidol, 4-methylcyclohexane methanol and propylene glycol phenyl ether) were studied to develop the fundamental understanding required to assess AOPs as a potential water treatment process. UV and visible light activated (VLA) TiO2 photocatalysis using nitrogen and fluorine-TiO2 (NF-TiO2), phosphorus and fluorine-TiO2 (PF-TiO2) and sulfur-TiO2 (S-TiO2) were employed for degradation of 6-hydroxymethyl uracil (6-HOMU), a model compound for the potent cyanotoxin cylindrospermopsin (CYN). NF-TiO2 exhibits the most photoactive, followed by marginally active PF-TiO2 and inactive S-TiO2 under visible light irradiation. Our results indicate that O2-• plays an important role in VLA TiO2 photocatalysis. Fe (VI), an environmentally friendly oxidant, was employed for the degradation of CYN and 6-HOMU over a range of pH (7 ~ 9.5). The second order rate constants for the reaction of Fe (VI) with CYN decrease from 38.83 ± 0.07 M-1s-1 at pH 7 to 5.02 ± 0.04 M-1s-1 at pH 9.5. Fe (VI) mediated reactions primarily occur via oxidation of the uracil ring in CYN. ELISA results demonstrate that Fe (VI) oxidation process leads to a significant decrease in the bioactivity of CYN as a function of treatment time. Fe (III)-oxalate/H2O2 process was employed for the remediation of iopamidol, a model for ICM, to determine the formation rates and steady concentrations of •OH and O2-• under UV and visible light irradiation. Reduction by CO2-• and oxidation by •OH contribute to the degradation pathways. Pulse and gamma radiolysis of 4-methylcyclohexane methanol (MCHM) and propylene glycol phenyl ether (PPh) were studied to determine the bimolecular rate constants and reaction pathways. •OH addition to ortho and para positions in PPh are the predominant reaction pathways; H-abstraction are the primary reaction mechanisms for ∙OH mediated oxidation of MCHM

Mercury (Hg) is a global contaminant of ecosystems and human health risk, with complicated biogeochemical processes. Mercury sulfide (HgS) dissolution has been suggested as a key process in Hg cycling, as it could potentially increase the pool of inorganic Hg (iHg) for the production of methylmercury (MeHg). Despite previous sporadic observations of enhanced HgS dissolution under certain conditions, much remains unclear on mechanisms of HgS dissolution. The objective of my research was to advance the mechanistic understanding of HgS dissolution, concerning re-adsorption of released Hg, effects of thiol-ligands, and Hg speciation. Considering the lack of feasible techniques to differentiate dissolution and re-adsorption processes, I first developed an efficient method using isotope tracer and isotope dilution techniques to investigate the re-adsorption of released Hg during HgS dissolution. The HgS dissolution rate with consideration of re-adsorption was two times the rate calculated from detecting Hg alone in the presence of O2, indicating the importance of Hg re-adsorption during HgS dissolution. I further examined the role of Hg-ligand complexation in HgS dissolution and Hg(II) re-adsorption using a thermodynamic adsorption method, selecting L-cysteine (Cys) as a model compound for low molecular weight ligands and Waskish fulvic acid (FA) for natural dissolved organic matter (DOM). My results suggest that the presence of Cys enhanced HgS dissolution through the decreased re-adsorption of Hg-Cys complex, whereas Waskish FA inhibited HgS dissolution, possibly because of the adsorption of FA on HgS surface that covered dissolution sites. I further employed a geochemical modeling method to study Hg speciation and the relation of iHg speciation to MeHg, aiming to provide a methodological example for potentially evaluating the implications of Hg species distribution during HgS dissolution on MeHg production. I applied geochemical model PHREEQC to the Florida Everglades, a well-studied wetland with model input parameters available, to determine the distribution of iHg in surface water at different sites. The modeling results suggest that sulfide and DOM govern iHg speciation, and the Hg-sulfide and Hg-DOM species are related to MeHg in environmental media but not fish, suggesting the importance of iHg speciation in MeHg production and the complexity of Hg bioaccumulation.

Mangos (Mangifera indica L.) are tropical/subtropical fruits belonging to the plant family Anacardiaceae. Anthracnose is the most deleterious disease of mango both in the field and during postharvest handling. It is most commonly caused by the Colletotrichum gloeosporioides complex. Mangiferin, a xanthanoid compound found in at least twelve plant families worldwide (Luo et al., 2012), is present in large amounts of the leaves and edible mangos. Even though this compound plays a pivotal role in the plant’s defense against biotic and abiotic stressors, no correlations been made between the compound and mango anthracnose resistance. Mangos were collected, grouped according to their countries of origin, and evaluated for their mangiferin concentrations at four different stages of development. Extracts of interest were then tested against different strains of C. gloeosporioides. The results demonstrated that mangiferin concentrations are significantly different at different stages in fruit development. The antifungal assays were inconclusive.

Black carbon (BC) is a complex mixture of polycondensed aromatic compounds produced by the incomplete combustion of biomass during events such as wildfires and the burning of fossil fuels. Black carbon was initially considered to be a refractory form of organic matter. However, recent studies have shown that BC can be quite mobile and reactive in the terrestrial environment. Black carbon can be translocated from soils and sediments in the form of dissolved BC (DBC). A global correlation between DBC and bulk dissolved organic carbon (DOC) has been established for fluvial systems where DBC comprises approximately 10% of the total DOC pool, which suggests that DBC may be a significant contributor to the global carbon cycle. The primary objective of this thesis was to further characterize DBC and elucidate some of the specific physical and chemical processes that promote its transfer to the aqueous phase and drive the DBC-DOC relationship. The molecular composition and qualitative distribution of DBC was assessed using Fourier transform ion cyclotron resonance mass spectrometry. Black carbon in both dissolved and particulate (PBC) phases was quantified by the benzenepolycarboxylic acid method. Dissolved BC was found to contain considerable amounts of nitrogen and the export of this dissolved black nitrogen was linked to watershed land use in global rivers. The riverine flux of PBC, a previously unstudied BC removal mechanism, was significantly increased by local wildfire activity. However in-stream DBC did not appear to be affected by short-term fire events. Once translocated to surface waters, DBC is susceptible to photodegradative processes. Dissolved BC in high molecular weight DOC fractions was more photoreactive than DBC associated with lower molecular weight fractions. In the coming decades, wildfire frequency is expected to increase with climate change and natural lands will continue to be altered for anthropogenic use. These processes have already been shown to significantly impact the composition of DOC and associated DBC exported to inland waters. The quality of DBC influences its stability in soil and resistance to degradation. Therefore, it is essential that we aim to fully understand DBC dynamics in natural systems in order to assess its contribution to global carbon cycling.

The Everglades is a sub-tropical coastal wetland characterized among others by its hydrological features and deposits of peat. Formation and preservation of organic matter in soils and sediments in this wetland ecosystem is critical for its sustainability and hydrological processes are important divers in the origin, transport and fate of organic matter. With this in mind, organic matter dynamics in the greater Florida Everglades was studied though various organic geochemistry techniques, especially biomarkers, bulk and compound specific δ13C and δD isotope analysis. The main objectives were focused on how different hydrological regimes in this ecosystem control organic matter dynamics, such as the mobilization of particulate organic matter (POM) in freshwater marshes and estuaries, and how organic geochemistry techniques can be applied to reconstruct Everglades paleo-hydrology. For this purpose organic matter in typical vegetation, floc, surface soils, soil cores, and estuarine suspended particulates were characterized in samples selected along hydrological gradients in the Water Conservation Area 3, Shark River Slough and Taylor Slough. This research focused on three general themes: (1) Assessment of the environmental dynamics and source-specific particulate organic carbon export in a mangrove-dominated estuary. (2) Assessment of the origin, transport and fate of organic matter in freshwater marsh. (3) Assessment of historical changes in hydrological conditions in the Everglades (paleo-hydrology) though biomarkes and compound specific isotope analyses. This study reports the first estimate of particulate organic carbon loss from mangrove ecosystems in the Everglades, provides evidence for particulate organic matter transport with regards to the formation of ridge and slough landscapes in the Everglades, and demonstrates the applicability of the combined biomarker and compound-specific stable isotope approach as a means to generate paleohydrological data in wetlands. The data suggests that: (1) Carbon loss from mangrove estuaries is roughly split 50/50 between dissolved and particulate carbon; (2) hydrological remobilization of particulate organic matter from slough to ridge environments may play an important role in the maintenance of the Everglades freshwater landscape; and (3) Historical changes in hydrology have resulted in significant vegetation shifts from historical slough type vegetation to present ridge type vegetation.

Iron and manganese are relevant constituents of the earth's crust and both show increasing mobility when reduced by free electrons. This reduction is known to be controlled by microbial dissimilation processes. Alternative sources of free electrons in nature are cloud-to-ground lightning events with thermal and galvanic effects. Where thermal effects of lightning events are well described, less is known about the impact of galvanic lightning effects on metal mobilization. Here we show that a significant mobilization of manganese occurs due to galvanic effects of both positive and negative lightning, where iron seems to be unaffected with manganese being abundant in oxic forms in soils/sediments. A mean of 0.025 mmol manganese (negative lightning) or 0.08 mmol manganese (positive lightning) mobilization may occur. We suggest that lightning possibly influences biogeochemical cycles of redox sensitive elements in continental parts of the tropics/subtropics on a regional/local scale.

<p>Swimming is the second most common form of recreational activity in the U.S. Swimming pool water and air quality should be maintained to allow swimmers, pool employees, and spectators to use the pool facility safely. One of the major concerns regarding the health of swimmers and other pool users is the formation of disinfection by-products (DBPs) in swimming pools. Previous research has shown that volatile DBPs can adversely affect the human respiratory system. DBPs are formed by reactions between chlorine and other compounds that are present in water, most of which are introduced by swimmers, including many that contain reduced nitrogen. Some of the DBPs formed in pools are volatile, and their transfer to the gas phase in pool facilities is promoted by mixing near the air/water interface, caused by swimming and pool features.</p> <p><a>Swimming pool water treatment processes can play significant roles in governing water and air quality.</a> Thus, it is reasonable to hypothesize that water and air quality in a swimming pool facility can be improved by renewing or enhancing one or more components of water treatment.</p> <p>The first phase of the study was designed to identify and quantify changes in water and air quality that are associated with changes in water treatment at a chlorinated indoor pool facility. Reductions of aqueous NCl₃concentration were observed following the use of secondary oxidizer with its activator. This inclusion also resulted in significant decreases in the concentrations of cyanogen chloride (CNCl) and dichloroacetonitrile (CNCHCl₂) in pool water. The concentration of urea, a compound that is common in swimming pools and that functions as an important precursor to NCl₃ formation, as well as a marker compound for introduction of contaminants by swimmers, was also reduced after the addition of activator.</p> <p>The second phase of this study involved field measurements to characterize and quantify the dynamic behavior of indoor air quality (IAQ) in indoor swimming pool facilities, particularly as related to volatile compounds that are transferred from swimming pool water to air. Measurements of water and air quality were conducted before, during, and after periods of heavy use at several indoor pool facilities. The results of a series of measurements at different swimming pool facilities allowed for examination of the effects of swimmers on liquid-phase DBPs and gas-phase NCl₃. Liquid-phase NCl₃ concentrations were observed to gradually increase during periods of high swimmer numbers (<i>e.g.</i>, swimming meets), while liquid-phase CHCl₃ concentration was nearly constant in the same period. Concentrations of urea displayed a steady increase each day during these periods of intensive use. In general, the highest urea concentrations were measured near the end of each swimming meet. </p> <p>Measurements of IAQ dynamics during phase 2 of the study demonstrated the effects of swimmers on the concentrations of gas-phase NCl₃and CO₂, especially during swimming meets. The measured gas-phase NCl₃ concentration often exceeded the suggested upper limits of 300 µg/m³ or 500 µg/m³during swimming meets, especially during and immediately after warm-up periods, when the largest numbers of swimmers were in the pool. Peak gas-phase NCl₃ concentrations were observed when large numbers of swimmers were present in the pools; measured gas-phase concentrations were as high as 1400 µg/m³.Concentrations of gas-phase NCl₃ rarely reached above 300 µg/m³ during regular hours of operation. Furthermore, the types of swimmers were shown to affect the transfer of volatile compounds, such as NCl₃, from water to airin pool facilities. In general, adult competition swimmers promoted more rapid transfer of these compounds than youth competition swimmers or adult recreational swimmers. The measured gas-phase CO₂ concentration often exceeded 1000 ppm_v during swimming meets, whereas the gas-phase CO₂ concentration during periods of non-use of the pool tended to be close to the background (ambient) CO₂ concentration or slightly more than 400 ppm_v. This phenomenon was largely attributed to the activity of swimmers (mixing of water and respiratory activity) and the normal respiratory activity of spectators. </p> <p>IAQ models for gas-phase NCl₃ and CO₂ were developed to relate the characteristics of the indoor pool environment to measurements of IAQ dynamics. Several assumptions were made to develop these models. Specifically, pool water and indoor air were assumed to be well-mixed. The reactions that were responsible for the formation and decay of the target compounds were neglected. Two-film theory was used to simulate the net mass-transfer rate of volatile compounds from the liquid phase to the gas phase. Advective transport into and out of the air space of the pool were accounted for. The IAQ model was able to simulate the dynamic behavior of gas-phase NCl₃ during regular operating hours. Predictions of gas-phase NCl₃ dynamics were generally less accurate during periods of intensive pool use; however, the model did yield predictions of behavior that were qualitatively correct. Strengths of the model include that it accounts for the factors that are believed to have the greatest influence on IAQ dynamics and is simple to use. Model weaknesses include that the model did not account liquid-phase reactions that are responsible for formation and decay of the target compounds. The IAQ model for NCl₃ dynamics could still be a useful tool to form the basis for recommendations regarding the design and operation of indoor pool facilities so as to optimize IAQ.</p><p>Measurements of CO₂ dynamics indicated qualitatively similar dynamic behavior as NCl₃. Because of this, it was hypothesized that CO₂ may represent a surrogate for NCl₃ for monitoring and control of IAQ dynamics. To examine this issue in more detail, a conceptually similar model of CO₂dynamics was developed and applied. The model was developed to allow for an assessment of the relative contributions of liquid®gas transfer and respiration by swimmers and spectators to CO₂ dynamics. The results of this modeling effort indicated that the similarity of CO₂ transfer behavior to NCl₃ may allow use of CO₂ as a surrogate during periods with few to no spectators in the pool; however, when large numbers of spectators are present, the behavior of CO₂ dynamics may not be representative of NCl₃ dynamics because of spectator respiration.</p><p></p> <br>