<p>Sensor technology is evolving rapidly, offering new opportunities for environmental data collection. Yet, despite the large number of sensors now available, there is a lack of logging platforms that can be used to operate these sensors in situ. To address this shortfall, River Restoration Intelligence and Verification (RRIV) has developed an environmental data logger that meets the needs of the environmental sensing community. This platform has several advantages that reduce the time, effort, and technical know-how required to deploy environmental sensors. An extensive low-power mode is available, and hardware such as a real-time clock with an independent power source is incorporated. A driver system has been developed that allows users to incorporate sensors into the platform with minimal effort. RRIV loggers also include a command line interface that allows user to add or remove sensors, calibrate sensors, or configure deployments without the need for C/C++ programming, something that is not possible with out-of-the-box microcontrollers such as Arduino and ST Nucleo products. The technology incorporated into RRIV and how it is applied and deployed in the field is described. This includes a description of power consumption. Protocols and descriptions of case construction are also included. RRIV loggers configured to monitor carbon dioxide and methane are used to demonstrate how this platform is used in the field.</p>

<p dir="ltr">In the Midwest, tile drainage is used to lower water tables and remove excess water from the soil to improve crop production. This network of underground pipes (i.e., tiles) and expansive agriculture also increases nutrient export, contributing to ecological harm in local lakes and rivers and further downstream in the Gulf of Mexico. Conservation practices that avoid, control, or trap nutrients can mitigate these losses, but studies quantifying their impact at the watershed scale are challenging. This work uses water quality monitoring data collected throughout the Midwest to identify potential nutrient sources and pathways, the hydroclimatic variables influencing them, and the effects of conservation practices. In a study in northeast Indiana, nutrient travel times for total phosphorus, soluble reactive phosphorus, nitrate, and dissolved organic carbon were observed to be faster during winter storm events, likely due to a lack of vegetative processes. Tile drains were the primary contributor to in-stream nitrogen and phosphorus during spring storms but were not a primary contributor for phosphorus in the winter. Data from nitrate sensors across the Midwest were used to quantify the effect of sampling frequency on hysteresis and flushing indices, showing that sampling intervals greater than 8 hours estimates could lead to inaccurate values, and that caution should be used when interpreting outcomes when using longer sampling intervals. Wet antecedent conditions were associated with a dilution pattern of nitrate during storm events, and tile drainage exacerbates this by causing greater leaching during wet periods. A systematic review of water quality monitoring studies at the watershed scale showed the limits using current data, and suggested how providing better statistics could be used to facilitate a more robust meta-analysis to determine effect sizes and sources of heterogeneity among studies. In a monitoring study located in the central Indiana, agricultural conservation practices reduced nitrate concentrations by 27% in an artificially drained watershed. While tile drainage is a critical pathway for nutrients in the Midwest, the combined effect of various conservation practices can improve water quality at the watershed scale.</p>

<p>  </p> <p>The rise of technology as a data source for ecological research and biodiversity conservation has led to a host of new opportunities, and new challenges, for researchers, conservationists, policymakers, and land managers. As these technologies have become more common and more capable, researchers need improved methods and improved theoretical frameworks to integrate these technologies with each other; with social science and policy; and with land-use planning. This thesis proposes several of these conceptual and theoretical frameworks—one for integration of heterogeneous data and another for the integration of ecological data with economic decision-making and policy analysis. It then suggests new methodologies for data quality assurance. Lastly, it demonstrates the applicability of acoustic monitoring in a key land-use context: agriculture in a premium crop that is grown in global biodiversity hotspots. </p>

<p>  </p> <p>The pandemic prompted buildings globally to transition to low or no occupancy as social distancing to reduce the spread of Coronavirus Disease (COVID-19). This consequence prompted concerns about the chemical and microbiological safety of building drinking water due to stagnation. At the same time, microplastic (MP) pollution received increasing global attention due to their presence in the environment and recent discoveries within water distribution systems and at building faucets. MP sources have primarily been targeted as originating within the drinking water sources, but plastic plumbing components are less discussed and known to deteriorate into fragments and smaller pieces that reach faucets. Literature at the time of this work as sparse on stagnation impacts to drinking water quality and the fate of MPs in plumbing. In particular, health officials and building owners issued and received many differed guidance documents telling building owners do different things and no standard guideline was available to reduce the health risks caused by stagnant building drinking water. This dissertation  examined three different types of buildings during closed to low water use conditions and conducted bench-scale testing to explore the phenomena observed in the field. Chapter 1 describes water quality impacts during a 7 year old ‘green’ middle school as it transitioned from Summer (low water use) to Fall (normal use). Field experiments revealed that more than half of first draw water samples exceeded the copper (acute) health-based action limit during low water use. Copper concentration within the school increased as distance from building entry point increased. Chapter 2 and 3 describe report on chemical and microbiological water quality in buildings at a university buildings (Chapter 2), and elementary school (Chapter 3). Chapters 2 and 3 revealed that stagnation negatively impacted chemical and microbiological building water quality (cold and hot) but flushing was effective at remediating high concentration of heavy metals and <em>Legionella pneumophila</em> at most locations. But in large buildings, where building plumbing system was more complicated, flushing did not always result in improved water quality. Also discovered was that water quality again deteriorated even after whole building water system was flushed. It is important to understand own building systems to maintain water quality as each building complexity requires specific knowledge and solutions. Chapter 4 describes current knowledge associated with MPs in drinking water and results of bench scale experiments on MP fate and transport in building plumbing. This work identified that while MPs have been reported at building faucets, sampling details lacking from available studies often resulted in study results not being comparable across others. Based on the review of the issue, it was found that MPs have likely reached building faucets for decades but have received no characterization until recently. Bench-scale testing using two MPs, of different density, in copper and crosslinked polyethylene (PEX) pipes revealed size influenced the amount of MPs retained in a pipe. Research needs were identified to determine the fundamental factors that control MP fate in plumbing and their presence at building faucets. </p>

<p dir="ltr">To examine how forest management affects terrestrial salamanders, this dissertation: (1) examines the effects of timber harvesting strategies on salamanders; (2) examines the effects of prescribed fire for oak regeneration on salamander populations; and (3) explores the influence of artificial cover object (ACO) wood type, size and shape, and placement on salamander monitoring results. These projects were conducted at the Hardwood Ecosystem Experiment (HEE) and Martell Experimental Forest in Indiana. Long-term salamander monitoring data from the HEE were used to examine the effects of clearcuts, shelterwoods, and patch cuts on salamander captures collected up to eleven years post-harvest and were analyzed with a before-after-control-impact (BACI) design. Clearcuts and patch cuts had negative effects on salamanders 4-6 years post-harvest, which coincided with a drought; however, preparatory and establishment shelterwood harvests showed no effects on salamander captures, suggesting that retaining canopy cover may protect salamanders from compound disturbances such as drought. Also at the HEE, capture-recapture techniques were used to examine salamander population estimates before and after fire. Only two of three fires affected salamander populations. In the short term, prescribed fire effects on salamanders may be weak and intermittent and microclimate may have a greater effect on populations, although the longer-term effects of fire remain unknown. At Martell Experimental Forest, salamander numbers were compared beneath ACOs of different wood types, sizes and shapes, and grid arrays of different spacings. Pine ACOs were preferred over ash, while several small ACOs yielded equal salamander numbers to one large ACO of equal total area. High ACO density may increase capture probability but reduce the area sampled by each ACO, while lower density ACO grids may cover a larger area with the same sampling effort and produce more comparable results, but with less precision; choice of ACO experimental design will therefore require careful consideration of management goals. This dissertation also suggests strategies to support salamander populations as guidelines for managers to consider in management planning.</p>

<p dir="ltr">Non-native biological invasions are one of the leading concerns for global biodiversity. The establishment of invasive species reduces local biodiversity, shifts species composition, changes successional trajectories, and alters ecosystem functions. This thesis examines two aspects of invasive plants: (1) the distribution and the most important climatic and anthropogenic drivers of invasive trees across the eastern United States, and (2) an evaluation of invasive plant removal and herbaceous recovery from a government cost-share program that provides financial support for invasive plant management by private landowners.</p><p><br></p><p dir="ltr">Our first study focused on identifying the distribution of invasive trees, and the factors associated with their distribution. This is essential to predicting spread and planning subsequent management. Using USDA Forest Inventory Analysis (FIA) data and random forest modeling, we examined the distribution, and variables associated with the distribution, of invasive tree species. Invasive trees were found in 10,511 out of 299,387 FIA plots. Invasive species basal area and density (trees per ha; TPH) were highest within the central and southern Appalachian Mountains, Michigan, the Northeast, and the southern Coastal Plain of the United States. A random forest model of invasive species basal area (R²= 0.47, RMSE = 0.47) and density (R²=0.46, RMSE=0.50) vs. environmental variables found that both invasive basal area and density were most strongly associated with human footprint, followed by various climatic variables. An equivalent model of native tree basal (R²=0.53, RMSE=9.25) and TPH (R²=0.47, RMSE=8.64) found that native tree basal area and density were most strongly associated with aridity followed by various climatic variables. As human footprint increased, invasive tree basal area and density increased. These results suggest that the distribution of invasive trees is reliant on human alterations to forests.</p><p><br></p><p dir="ltr">Our second study focused on Environmental Quality Incentives Program (EQIP), a federal cost-share program that has provided $25 billion of financial assistance to farmers and non-industrial private forest owners. Few studies have examined whether this program facilitates the recovery of the herbaceous layer while decreasing the dominance of invasive plant species. We surveyed the herbaceous layer of EQIP-treated and untreated (reference) forests across three physiographic regions of Indiana. Using non-metric multidimensional scaling (NMDS) ordination and linear mixed effects models, we evaluated the species composition, richness, diversity, evenness, floristic quality index, and herbaceous-layer cover of EQIP and reference sites. We also used linear mixed models to evaluate how EQIP site treatment affected the diversity of native plant species. Sites treated with EQIP contracts typically had significantly higher native species richness, Shannon’s diversity, and floristic quality than reference sites. There were significant separations in species composition between EQIP treated and reference forests state-wide and in the southern non-glaciated region of Indiana, although composition overlapped between EQIP and reference forests. Our study suggests that EQIP-funded treatments promote increased species richness and diversity. However, the persistent overlap in species composition we observed may signify biotic homogenization due to a long-shared history of anthropogenic disturbances between EQIP and reference sites. Therefore, active restoration of the herbaceous layer might be needed to allow a full recovery after invasive removal.</p>

<p dir="ltr">To reduce the establishment and spread of invasive plant species, the Environmental Quality Incentive Program (EQIP) was created in 1996 to provide financial and technical assistance to private landowners to aid in conservation practices and address environmental concerns. From 2014-2022, approximately $90 million dollars was obligated to the EQIP for completed contracts of over 240,000 hectares in Indiana. However, to date, there has been no examination of whether participation in conversation cost sharing programs has resulted in the recovery of native tree diversity, growth, and reproduction following the treatment of invasive plants. Furthermore, there is a gap in our understanding of the effectiveness of EQIP and its success in achieving and maintaining management goals. This thesis quantifies the composition, diversity, regeneration density and growth of tree species in response to invasive plant treatments at sites that participated in the EQIP. In particular, I investigated how the species composition of woody seedlings (stems < 2 cm dbh) and woody saplings (2 – 5 cm dbh) differed across EQIP-treated and untreated reference plots. I then examined how native species richness and diversity values differed between EQIP-treated and untreated plots. Lastly, I used dendroecological methods to determine how treatment of invasive shrubs affected overstory tree growth. Across the state, I found that native species richness of seedlings and saplings was greater in EQIP-treated plots then within reference plots. Reference plots were associated with invasive species such as <i>Lonicera maackii</i> (Amur honeysuckle), <i>Rosa multiflora</i> (multiflora rose), <i>Elaeagnus umbellata</i> (autumn olive) and <i>L. japonica</i> (Japanese honeysuckle), while EQIP-treated plots were associated with native tree species, such as <i>Carya ovata</i> (shagbark hickory),<i> Ulmus americana </i>(American elm), <i>Fraxinus americana</i> (white ash), <i>Liriodendron tulipifera</i> (yellow-poplar), <i>Quercus alba</i> (white oak), <i>Q. velutina</i> (black oak), and shrubs, such as <i>Rubus allegheniensis</i> (Allegheny blackberry) and <i>Lindera benzoin</i> (spicebush). I observed that trees generally had greater basal area increment growth following invasive shrub treatments; therefore, the reduction of invasive shrub dominance on EQIP-enrolled lands has led to a small, but significant, increase in overstory tree growth. I observed high within-group variability in growth for EQIP-treated and reference plots, likely due to differing management strategies across privately owned forests. Overall, my results demonstrate that participation in the EQIP has positively benefited species richness, and native species composition, and tree growth.</p>