Thesis (Ph.D. (Zoology & Entomology)) - Rhodes University, 2007.

Thesis (Ph.D.)--University of Delaware, 2007. / Principal faculty advisor: K. Eric Wommack, Dept. of Plant & Soil Sciences. Includes bibliographical references.

Thesis (M. Sc.)--University of Canterbury, 2006. / Typescript (photocopy). Includes bibliographical references (leaves 116-138). Also available via the World Wide Web.

The ecologist Garrett Hardin (1968) introduced a useful concept called the tragedy of the commons, which describes how ecological resources become threatened or lost. The term “commons” is based on the commons of old English villages and is symbolic of a resource that is shared by a group of people. If every person were to use each resource in a sustainable fashion it would be available in perpetuity. However, if people use more than their share they would only increase their personal wealth to the detriment of others. In addition, an increase in the population would mean that the size of each share would have to decrease to accommodate the larger number of people. As a result, resources are threatened by personal greed and uncontrolled population growth. Freshwater is an example of a common resource that is under threat in South Africa where the average annual rainfall is less than 60 percent of the global average (Mukheibir & Sparks 2006). The increasing demands for freshwater as well as its eutrophication are major concerns with regards to estuarine health, environmental resource management and human health. The correct management of water is necessary to ensure that it is utilised in a sustainable manner. The National Water Act (No. 36 of 1998) has provided the rights to water for basic human needs and for sustainable ecological function; the Basic Human Needs Reserve and Ecological Reserve are both provided as a right in law. The amount of water necessary for an estuary to retain an acceptable ecological status, known as the Estuarine Ecological Reserve, is determined through the implementation of procedures (rapid, intermediate or comprehensive) compiled by the Department of Water Affairs and Forestry (1999) in its Resource Directed Measures (RDM) for the Protection of Water Resources. The impact of restricted flow on estuaries can be reduced by manipulating the water released from impoundments, the regulation of water abstractions within the river catchment or both (Hirji et al. 2002). The reserve assessment method is designed to evaluate ecosystem requirements by employing groups of specialists from different disciplines. In South Africa, this includes hydrologists, sedimentologists, water chemists and biologists (including microalgae specialists). The use of microalgae in ecological assessments has largely been based on research that was initiated at the Nelson Mandela Metropolitan University (formerly University of Port Elizabeth) and subsequently at Rhodes University (Grahamstown) and the University of KwaZulu Natal (Durban). The microalgal research can be divided into two main focus areas; phytoplankton and benthic microalgae

From Introduction: Energy passes through an ecosystem via a multiplicity of interconnected routes, which can be broadly categorised into trophic and detrital pathways. The "metabolic activity" of most lakes will be governed predcminantly at the base of these two routes; namely, the primary producer and decanposer levels, respectively (Wetzel and Allen, 1972). The importance of the littoral primary producers (especially the aquatic macrophytes) in the functioning of the Swartvlei ecosystem has been emphasised in a comprehensive report by Howard-Williams and Allanson (1978) dealing with the lake system fran 1975 to 1978. They noted that although the littoral shelf (<2m below low water level) occupies only 43% of the lake's surface area it contributed 64% of the total annual primary production during the period investigated. This was largely due to the dense Potamogeton pectinatus stands which alone accounted for 52% of the total carbon input into the lake by plants. The fact that the production/biomass ratio for P. pectinatus was only 1,2:1 suggested that its importance as a primary producer in Swartvlei was largely due to its high bianass. (Biomass, or standing stock, is used in this report as defined by Waters (1977); namely, "the amount present at a point in time, expressed best as quantity per spatial unit".)

Wetlands are some of the most diverse and productive ecosystems on earth. Water-level fluctuations determine the ecological function of shallow lakes and wetlands. Currently, anthropogenic modification to water-level fluctuations is the leading source of ecological degradation in lake and wetland ecosystems worldwide. I used wading birds nesting in Lake Okeechobee, as a model system to address the challenges of environmental restoration within an ecosystem greatly impacted by anthropogenic activities. Specifically, I 1) identified environmental factors most important for predicting the number of wading bird nests, 2) tested the assumptions of both the match-mismatch and the threshold hypothesis by modeling the relationship between nesting success and prey density with foraging habitat availability, and 3) measured the stress response of Great (Ardea alba) and Snowy Egrets (Egretta thula) to hydrologically-mediated changes in food availability. Collectively, the results suggest that the number of nests was greatest when area of nesting substrate was high and water-levels were moderate (3.9 - 4.4 m). Nest numbers dropped when either nesting substrate or foraging habitat was limited. My investigation into the predictions of the match-mismatch and threshold hypotheses found that indeed, prey density can reduce or intensify the effects of a mismatch event. The interaction of prey density and foraging habitat availability was significant and positive in both models. Saturation thresholds existed for both fledging success (147 prey (m^2)^-1) and total productivity (189 prey (m^2)^-1), above which high concentrations of prey could sustain nesting when foraging habitat availability was low. Finally, my studies of the stress response support the hypothesis that hydrologic factors associated with prey availability play an important role in regulating nesting patterns, although the level of food limitation the birds experience at the lake was not as severe as expected. Model selection identified foraging habitat availability as most influential to the nestling Great Egret stress response, whereas foraging habitat availability and prey density both influenced nestling Snowy Egret stress response. Moreover, the Snowy Egret stress response was more sensitive to changes in prey availability than was the Great Egret stress response. Temperature and foraging conditions influenced yolk corticosterone concentrations for both egret species. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection

Mangrove forests are an integral part of coastal wetlands in temperate and tropical regions of the world, including New Zealand. These coastal plants act as a shelter,feeding and breeding grounds for marine and terrestrial organisms. Many overseas studies have investigated the importance of mangrove and seagrass habitats in sustaining coastal food chains. In New Zealand, however, only a few studies have addressed the ecology and food web dynamics of these temperate ecosystems.As a first step to investigate the nutrient dynamics of estuarine food webs in temperate estuaries, this study aimed to quantify the nutrient concentrations in the catchment and the estuary of Matapouri, northern New Zealand. Field studies involved the collection of surface fresh and estuarine water (during low and high tides). Plant material (mangrove and seagrass), and sediment samples were collected at various sites within the estuary. Chemical analyses were carried out to determine the concentration of C, N, P and Si macronutrients and Fe and Zn micronutrients during different seasonal rainfall events.The results suggest that mangrove habitats may act as a source of POC, but not DOC for the adjacent aquatic habitats (i.e., seagrass, sand flats, channels), while seasgrass beds contribute more N to the estuarine system than the mangrove forests. The concentrations of N and P nutrients are strongly influenced by both the freshwater inputs and the bio-chemical processes within the estuary. The results obtained point to the freshwater streams as the main source of Si and Fe in the estuary. However, Zn was higher in the estuarine water compared to the catchment freshwater. NO3 -, NH4 +, Fe and Zn concentrations showed strong responses to the higher rainfall months reaching their highest level during the winter and early spring seasons. Conversely, P concentrations showed a negative seasonal pattern, which was linked to monthly rainfall events.Mangrove sediments may operate as a sink for the heavy metal Zn in Matapouri estuary. Iron concentration in seagrass leaves exceeded that in mangrove leaves by 65 orders of magnitude. The study suggests that seagrass plants could be used as a biological indicator of iron concentration in the estuary. The complex dynamics of bio-chemical cycles in Matapouri indicate that each habitat within the estuary has specific nutrient contributions to the estuarine food web system. However, the catchment and oceanic influences must also be considered in the nutrient balance of these coastal environments.

Estuarine habitats along the temperate south-eastern shores of Australia are generally made up of salt marsh, mangrove forests and seagrass beds. In urban areas these habitats have been progressively fragmented as a result of population increase and industrial expansion. Salt marshes in particular have been vulnerable to urban expansion and reclamation because of their close proximity to densely populated areas, while mangrove forests have been less often reclaimed because of frequent tidal inundation. The effect of reclamation of salt marshes on the biotic assemblages and functioning of mangrove forests with an adjacent salt marsh, park or bund wall was examined at nine separate locations on the Parramatta River, Sydney NSW. A mensurative approach was used to describe the patterns of distribution and abundance of macro fauna at several temporal and spatial scales. The implications for management are that salt marshes are an integral part of estuaries, and smaller patches of salt marsh are just as important as larger patches in maintaining the diversity of faunal assemblages and ecosystem functioning in mangrove forests in urban areas / Master of Science (Hons)

Estuarine benthic assemblages are often numerically dominated by polychaetes. The limits of these populations are determined by larval, and probably to a lesser extent adult movement. A previous study (Newton 1996), indicated that planktonic polychaete larvae were very abundant over the summer months in the Hopkins River; however, the identification and source of these larvae was not known. Defining the extent of a population, and therefore the likelihood of that population recovering following a perturbation, is crucial for effective estuarine management. This study investigated both the likely source of the larvae, (i.e. estuarine or marine) and the extent of larval dispersal within and between estuaries by addressing the following questions: Which taxa produced the planktonic larvae? Are these taxa resident estuarine species? Are the larvae of different taxa evenly distributed within the estuary or do physicochemical parameters or other factors influence their abundance? Are the same larvae found in other estuaries along the coast? and Is there exchange of these larval taxa with the marine environment and other estuaries? Larvae were identified and described by culturing commonly occurring planktonic larvae until adult characteristics appeared. The spionids, Carazziella victoriensis and Prionospio Tatura, numerically dominated the plankton in the Hopkins and the spionid, Orthoprionospio cirriformia was recorded from the Hopkins, Curdies and Gellibrand estuaries. Two spionids, Carazziella sp. and Polydora sp. were identified from tidal waters. Mouth status and physicochemical conditions (salinity, temperature and dissolved oxygen) were monitored in each estuary. Whereas the Merri and Gellibrand estuaries were predominantly stratified over the sampling period, the Curdies was more often well mixed and the Hopkins varied from well mixed to stratified. The duration of mouth opening and hence the opportunity for larval exchange also varied in each estuary. The Merri River was closed for 13.5% of days over the study period, the Gellibrand River for 18.4%, the Hopkins River for 49% and the Curdies River for 71.0%. The distributions of larvae at spatial scales of metres, 100s of metres and kilometres were investigated within a single estuary. While the same larvae, C. victoriensis, P. Tatura and bivalve larvae, were found along the length of the Hopkins estuary the abundances varied at different spatial scales suggesting different processes were influencing the distribution of P. Tatura larvae, and C. victoriensis and bivalve larvae. The distribution of larvae between several estuaries was investigated by monitoring meroplankton at two sites at the mouth of each of the four estuaries approximately monthly (except for winter months). Different meroplanktonic assemblages were found to distinguish each estuary. Further, C. victoriensis and P. Tatura larvae were only recorded in the Hopkins but larvae of the spionid, Orthoprionopio cirriformia were detected in the Hopkins, Curdies and Gellibrand estuaries. The extent of larval exchange with other estuaries and the marine environment was determined by monitoring tidal waters. Settlement trays were also deployed to determine if larvae were moving into estuaries and settling but not recruiting. P. tatura larvae were not detected in the tidal waters of any estuary and while C. victoriensis and O. cirriformia were found in both flood and ebb tides there was no evidence of movement of theses taxa to other estuaries. Larvae of the spionids, Carazziella sp. and Polydora sp., were found in tidal waters of each estuary but were rarely detected in the plankton within the estuaries. Neither species was found as an adult in background cores from any estuary, nor with the exception of a few individuals in the Merri, were they detected in settlement trays in any estuary. I conclude that the source of the larvae of C. victoriensis, P. Tatura and O. cirriformia is estuarine and while C. victoriensis, and O. cirriformia move in and outh of the source estuary in tidal waters there was no evidence for movement to other estuaries. The spionids, Carazziella sp. and Polydora sp were considered to be marine and while they moved in and out of estuaries in tidal waters they did not usually settle in the estuaries. The results of this study are a crucial first step in the development of ecological models to better understand dispersal in seasonally closed estuaries that are typical of southern Australia. This study emphasises the unique physicochemical characteristics and biological assemblages within these estuaries and the need for estuarine management to reflect these differences.

Estuarine habitats along the temperate south-eastern shores of Australia are generally made up of salt marsh, mangrove forests and seagrass beds. In urban areas these habitats have been progressively fragmented as a result of population increase and industrial expansion. Salt marshes in particular have been vulnerable to urban expansion and reclamation because of their close proximity to densely populated areas, while mangrove forests have been less often reclaimed because of frequent tidal inundation. The effect of reclamation of salt marshes on the biotic assemblages and functioning of mangrove forests with an adjacent salt marsh, park or bund wall was examined at nine separate locations on the Parramatta River, Sydney NSW. A mensurative approach was used to describe the patterns of distribution and abundance of macro fauna at several temporal and spatial scales. The implications for management are that salt marshes are an integral part of estuaries, and smaller patches of salt marsh are just as important as larger patches in maintaining the diversity of faunal assemblages and ecosystem functioning in mangrove forests in urban areas / Master of Science (Hons)