The Bushmans Estuary is one of the few permanently open estuaries in the Eastern Cape that is characterized by large intertidal salt marshes. Freshwater inflow to the estuary has decreased as a result of abstraction by more than 30 weirs and farm dams in the catchment. The mean annual run-off is naturally low (38 x 106 m3 y-1) and thus abstraction and reduction of freshwater inflow to the estuary is expected to cause a number of changes. The aims of this study were to determine the current health/status of the estuary based on the macrophytes and microalgae and identify monitoring indicators for the East London Department of Water Affairs, River Health Programme. Changes in the estuary over time were determined from available historical data which were compared with present data. This analysis showed that under normal average conditions freshwater inflow to the estuary is very low, less that 0.02 m3 s-1 most of the time. Under these conditions the estuary is in a homogenous marine state. Vertical and horizontal salinity gradients only form when high rainfall and run-off occurs (> 5 m3.s-1). Salinity gradients from 30.1 PSU at the mouth to 2.2 PSU in the upper reaches were measured in 2006 after a high flow event. However the estuary quickly reverted back to its homogenous condition within weeks after this flood. This study showed that freshwater inflow increased nutrient input to the estuary. Total oxidised nitrogen (TOxN) and soluble reactive phosphorus (SRP) concentrations were higher in August 2006, after the flood, than during the other low flow sampling sessions. TOxN decreased from a mean concentration of 21.6 μM in 2006 to 1.93 μM in February 2009. SRP decreased from 55.3 μM to 0.2 μM respectively. With the increased nutrient availability, the response in the estuary was an increase in phytoplankton biomass. After the 2006 floods the average water column chlorophyll-a was 9.0 μg l-1, while in the low freshwater inflow years it ranged from 2.1 to 4.8 μg l-1. The composition of the phytoplankton community was always dominated by flagellates and then diatoms, with higher cell numbers in the nutrient-enriched 2006 period. Although the water column nutrient data indicated that the estuary was oligotrophic, benthic microalgal biomass (11.9-16.1 μg.g-1) in the intertidal zone was comparable with nutrient rich estuaries. Benthic species indicative of polluted conditions were found (Nitzschia frustulum, Navicula gregaria, Navicula cryptotenelloides). These benthic species were found at the sites where wastewater / sewage seepage had occurred. Benthic diatom species also indicated freshwater inflow. During the high flow period in 2006 the dominant diatoms were fresh to brackish species that were strongly associated with the high concentrations of TOxN and SRP (Tryblionella constricta, Diploneis smithii, Hippodonta cf. gremainii, and Navicula species). During the freshwater limited period of 2008 and 2009 the benthic diatom species shifted to a group responding to the high salinity, ammonium and silicate concentrations. The species in this group were Nitzschia flexa, Navicula tenneloides, Diploneis elliptica, Amphora subacutiuscula and Nitzschia coarctata. Ordination results showed that the epiphytic diatom species responded to different environmental variables in the different years. Most of the species in 2008/2009 were associated with high salinity, temperature, dissolved oxygen, ammonium and silicate concentrations while the response was towards TOxN and SRP in 2006. The dominant species were Cocconeis placentula v euglyphyta in 2006; Nitzschia frustulum in 2008; and Synedra spp in 2009. The average biomass of the epiphytes was significantly lower in May 2008 than in both August 2006 and February 2009; 88.0 + 17.7 mg.m-2, 1.7 + 0.8 mg.m-2, and 61.8 + 14.4 mg.m-2 respectively. GIS mapping of past and present aerial photographs showed that submerged macrophyte (Zostera capensis) cover in 1966 and 1973 was less than that mapped for 2004. Salt marsh also increased its cover over time, from 86.9 ha in 1966 to 126 ha in 2004, colonizing what were bare sandy areas. Long-term monitoring of the health of the Bushmans Estuary should focus on salinity (as an indicator of inflow or deprivation of freshwater), benthic diatom identification and macrophyte distribution and composition (for the detection of pollution input), and bathymetric surveys (for shallowing of the estuary due to sedimentation).

Estuaries are some of the most productive yet threatened ecosystems in the world. Despite their importance they face significant threats through changes to river flow, eutrophication, rapid population growth long the caost and harvesting of natural resources. A number of international studies have been conducted investigating the structure and functioning of an array of ecosystems using ecological network analysis. Energy flow networks have been contsructed for coastal, lagoonal, intertidial and, most notably, permantently open estuaries. Despite the valualble insights contributed by these and other studies, a lack of information on the majority of estuarine ecosystems exists.

Recent geomorphic and hydrologic environments of a mid-latitude alpine basin are investigated under the integrative theme of paleohydrology. The aims of this research are: 1) to characterize the response of selected biological and geophysical elements to recent climatic change; 2) to determine the resolution and length of paleoenvironmental records in the study area; and 3) to ascertain the significance of observed and inferred environmental change over the Little Ice Age interval. Bella Coola River drains 5050 km² of glacierized mountains along the central coast of British Columbia. Biological elements examined on a basin-wide scale included: tree-growth in temperature and moisture-stressed environments, damage to trees in glacial and fluvial settings, pollen variations in a variety of sedimentary deposits and soil development. Geophysical elements include primarily glacio-lacustrine and floodplain sediments, glacier deposits and river channel morphology. A retrospective strategy was adopted by testing initially for the nature of relationships between synoptic climate, basin hydrology and element response during the period of instrument record (1900 AD to present). Inferences about pre-instrument environments were then made using the proxy data. Events of several types are characteristically mixed in a response record. Variations in Douglas and subalpine fir growth, glacio-lacustrine sedimentation rates, glacier fluctuations and shifting of the Bella Coola River reflect a combination of persistent and episodically extreme behavior. Glaciers appear to respond by advancing or retreating after departures in winter precipitation persistent for several years. Extreme events, particularly high-magnitude autumn floods, are not exclusively linked to a particular set of mean climatic departures. This makes inferences from proxy data such as floodplain deposits and flood-damaged vegetation difficult. Periods of increased flood frequency are supposed to relate to an increase in floodplain sedimentation. Except in very favorable circumstances, paleoenvironmental methods do not have the resolution promised. Climatic information recoverable from tree-ring data and glacio-lacustrine sediments is of considerably lower than annual resolution. Statistically based climate models using proxy data as independent variables produce low levels of explained variance. Proxy data sources in the basin were largely restricted to the last 300 to 4OO years or Little Ice Age interval. Most glaciers in the basin reached Little Ice Age maxima in the middle of the 19th century in response to below average temperatures and above average precipitation between approximately 1800 and 1855 AD. Tree-ring data and equilibrium line altitudes on glaciers indicate that precipitation was on average 25 to 30% greater than the 1951-1980 mean. Inferred below average temperatures in the early l8th century probably signaled the beginning of the Little Ice Age along the central coast; however, there was not a major response in glaciers until persistent positive departures in precipitation occurred. Recession of glaciers from Little Ice Age maxima was slowed by cooler and wetter conditions between I885 and 1900 AD. The persistence of warmer and drier conditions in the first half of the 20th century was exceptional in comparison with inferred climate of the last 330 years. Major floods in 1805/06, 1826, 1885 and 1896 correspond to intervals of increased precipitation. / Arts, Faculty of / Geography, Department of / Graduate

The Indian River Lagoon (IRL) FL, USA, is an Estuary of National Significance due to its economic and high biodiversity. Microbial populations are understudied in the IRL despite their numerous ecological services. A two-year, nineteen-site Lagoon-Wide Survey (LWS) was conducted to provide the first 16S rRNA amplicon sequencing data on the microbiome of the sediment in the IRL and determine how the microbiome changed in response to environmental and anthropogenic factors. The most influential variables that explained the variability between microbiomes were porewater salinity, total organic matter (TOM), and copper (Cu). These results correlated with some of the anthropogenic pressures the IRL faces such as freshwater discharges from St. Lucie Estuary (SLE), trace metal contamination, and the accumulation of fine-grained, highly organic sediment known as “IRL muck” (muck). Research then focused on determining the microbial differences between three sets of sample types: sediment from the IRL versus the SLE; sediment that had three muck characteristics versus those with zero; and high TOM sediment that had high Cu versus high TOM sediment that had low Cu. Differentially abundant prokaryotes between sample types were determined with novel indicator analysis techniques. One technique tested the effectiveness of an indicator list to separate samples based upon the product of the sensitivity and specificity of partitioning around medoids clustering in comparison to metadata classifications. The other technique allowed for the tracking of changes in the entire indicator microbiome. These new indicator analysis techniques were created using the original LWS data and tested to determine how sediment microbiomes responded during two opportunistic surveys: dredging of muck from an IRL tributary (Eau Gallie River) and Hurricane Irma. These studies have filled the knowledge gap regarding the unknown microbiome of the IRL and how sediment microbiomes respond to extreme events such as dredging and a hurricane. They also led to the development of new indicator analysis techniques that can be used by to track changes in the entire indicator microbiome. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2020. / FAU Electronic Theses and Dissertations Collection

The zooplankton communities of the Mdloti and Mhlanga estuaries were studied over a 13-month period (March 2002-March 2003). Monthly daytime samples were collected from both estuaries at the lower, middle and upper reaches using a WP-2 net and a hyperbenthic sled. Throughout the study period, the Mdloti Estuary experienced nine breachings, while the Mhlanga experienced 16 such events. Significant differences in zooplankton abundance were observed between the two estuaries (F I, 73 = 5.2; P<0.05), with the Mdloti consistently exhibiting higher values than the Mhlanga. No significant differences were, however, observed in zooplankton biomass between the two estuaries (U = 634; P>0.05). At the Mdloti, zooplankton abundance ranged from 20 ind.m-3 to 5.4 x 106 ind.m-3 , while at the Mhlanga this ranged from 76 ind.m-3 to 2.0 x 105 ind.m-3 • Zooplankton biomass ranged from 0.08 mg.m-3 (OW) to 2010 mg.m-3 (OW) at the Mdloti, and from 0.18 mg.m-3 (OW) to 1210 mg.m-3 (OW) at the Mhlanga. A one-way ANOV A revealed significant differences in zooplankton abundance between the open and the closed phase, both at the Mdloti (FI, 30 = 59; P<0.05) 'and the Mhlanga (FI, 38 = 7.3; P<0.05), with the closed phase exhibiting consistently higher values than the open. Similarly, biomass was significantly higher during the closed than the open phase, both at the Mdloti (U= 16.5; P<O.OI) and the Mhlanga (U= 88, P<O.O 1). This pattern may be attributed to the stability achieved by these systems during periods of mouth closure, when the estuaries exhibit less freshwater input and a restricted exchange of water with the sea. At the Mdloti, zooplankton biomass (OW) was positively correlated to both phytoplankton (r= 0.36) and microphytobenthos biomass (r = 0.41). At the Mhlanga, zooplankton biomass (OW) was only positively correlated to phytoplankton biomass (r = 0.45) The most abundant taxa at the Mdloti during the open phase were Pseudodiaptomus hessei and copepod nauplii, each contributing 38% and 32% of the total stock, respectively. During the closed phase, however, rotifers were by far the dominant taxon, contributing 82% of the total zooplankton abundance. These were followed by cope pod nauplii with 16%. At the Mhlanga, the most abundant groups during the open phase were again the copepod nauplii (89%) and P. hessei (7 %), while the closed phase was dominated mainly by caridean larvae (39%) and copepod nauplii (26%). The dominance of P. hessei during the open phase of both estuaries may be attributed to the pioneering nature of this species. The dominance of rotifers at the Mdloti during the closed phase may have been due to the freshwater conditions that prevailed in this estuary as a result of prolonged mouth closure. The concentration of copepod nauplii increased dramatically 2-4 weeks after major rain events, possibly due to the hatching of dormant eggs in response to freshwater pulses. / Thesis (M.Sc.)-University of KwaZulu-Natal, 2005.

Increased abstraction of water in the catchment results in a reduced or altered pattern of river flow and this holds serious consequences for the downstream estuarine ecosystem. In South Africa this is a serious concern because freshwater is in limited supply and the demand for freshwater can be expected to increase in the future. A large multi-disciplinary consortium of South African scientists are working on projects to determine the freshwater requirements of estuarine ecosystems. As part of this, this thesis reports on research undertaken to develop mathematical models to determine the freshwater requirements of estuarine macrophytes. Three key macrophytes are selected. The macrophytes are Zostera capensis Setchell, Ruppia cirrhosa Grande, and Phragmites australis. They are common macrophytes in South African estuaries. Zostera and Ruppia are submerged macrophytes and Phragmites is an emergent macrophyte. They have different freshwater environments and therefore respond differently to alterations in freshwater flow. A first order differential equation model is used to determine the effect of different combinations of open and closed mouth conditions of the estuary on Zostera and Ruppia. The scenarios are selected to determine whether achieving a switch in states from a Zostera-dominated estuary to a Ruppia-dominated estuary is possible. To predict encroachment rates and colonisation patterns, a cellular automaton of the vegetative spread of existing Zostera beds is developed. After analysing various scenarios accounting for both an increase and a decrease in freshwater supply, the cellular automaton is extended to include interactions between Ruppia and Phragmites. The multi-species model is applied to the Kromme estuary, South Africa and the Great Brak estuary, South Africa. Various freshwater scenarios are examined from the natural runoff condition to the situation of no freshwater inflow. A sensitivity analysis of the spatial model with Zostera, Ruppia and Phragmites is conducted. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1998.

Increased abstraction of water in the catchment results in a reduced or altered pattern of river flow and this holds serious consequences for the downstream estuarine ecosystem. In South Africa this is a serious concern because freshwater is in limited supply and the demand for freshwater can be expected to increase in the future. A large multi-disciplinary consortium of South African scientists are working on projects to determine the freshwater requirements of estuarine ecosystems. As part of this, this thesis reports on research undertaken to develop mathematical models to determine the freshwater requirements of estuarine macrophytes. Three key macrophytes are selected. The macrophytes are Zostera capensis Setchell, Ruppia cirrhosa Grande, and Phragmites australis. They are common macrophytes in South African estuaries. Zostera and Ruppia are submerged macrophytes and Phragmites is an emergent macrophyte. They have different freshwater environments and therefore respond differently to alterations in freshwater flow. A first order differential equation model is used to determine the effect of different combinations of open and closed mouth conditions of the estuary on Zostera and Ruppia. The scenarios are selected to determine whether achieving a switch in states from a Zostera-dominated estuary to a Ruppia-dominated estuary is possible. To predict encroachment rates and colonisation patterns, a cellular automaton of the vegetative spread of existing Zostera beds is developed. After analysing various scenarios accounting for both an increase and a decrease in freshwater supply, the cellular automaton is extended to include interactions between Ruppia and Phragmites. The multi-species model is applied to the Kromme estuary, South Africa and the Great Brak estuary, South Africa. Various freshwater scenarios are examined from the natural runoff condition to the situation of no freshwater inflow. A sensitivity analysis of the spatial model with Zostera, Ruppia and Phragmites is conducted. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1998.

Microphytobenthos (MPB) generally dominates total autotrophic biomass in temporarily open/closed estuaries (TOCEs) of South Africa. A comparative study of MPB biomass was undertaken in two KwaZulu-Natal TOCEs, the Mdloti and the Mhlanga. Both estuaries receive different volumes of treated sewage waters. The Mdloti receives 8 ML.d-1, while the Mhlanga receives 20 ML.d-1, resulting in a capping flow of 0.092 and 0.23 m3.s-1, respectively. Through these effluents, eutrophication is enhanced and periods of mouth opening are also increased and prolonged, particularly at the Mhlanga. The aim of this study was to investigate fluctuations in MPB biomass in the Mdloti and the Mhlanga systems, with emphasis on freshwater flow and the alternation of closed and open phases. Sediment samples for MPB biomass were collected on a monthly basis, between March 2002 and March 2003, in the lower (mouth), middle, and upper (head) reaches of the two estuaries. MPB biomass ranged from 1.33 to 391 mg chI a m-2 and from 1.7 to 313 mg chI a m-2 in the Mdloti and the Mhlanga, respectively. A I-way ANOVA revealed no significant differences in MPB chI a concentrations between the two estuaries for the entire data set (Fl, 76 =1.48, P > 0.05). At the Mdloti, MPB biomass varied considerably, with values ranging from 1.33 to 131 mg chI a m-2 during the open phase, and from 18 to 391 mg chI a m-2 during the closed phase. A Mann-Whitney U test confirmed the high significance of these differences between open and closed phases (U= 29, P < 0.001). At the Mhlanga, MPB biomass ranged from 7.0 to 313 mg chI a m-2 during the open phase, and from 1.7 to 267 mg chI a m-2 during the closed phase. Unlike what was observed at the Mdloti, the higher MPB values at the Mhlanga were not always associated with the closed mouth state. In relation to key physico-chemical and biological factors, grazing pressure exerted by the zooplankton community appeared to have played a major role in controlling MPB biomass. Zooplankton biomass was consistently and positively correlated to MPB biomass throughout the study period both at the Mdloti (r = 0040, P < 0.001) and at the Mhlanga (r = 0.33, p < 0.05). Unlike what was shown in previous studies, light attenuation was not significantly correlated with MPB biomass during the period ofthe study, either at the Mdloti or the Mhlanga. These results show that the opening and closing of the mouth play a key role on the MPB biomass of both estuaries. The Mdloti seems to function as a typical TOCE, with prolonged open and closed phases. The Mhlanga, on the other hand, lacks a prolonged closed phase. This, in turn, affects its entire trophic structure and functioning. / Thesis (M.Sc.)-University of KwaZulu- Natal, 2004.

An estuary, according to the National Water Act of 1998, is a partially or fully enclosed body of water which is open periodically or permanently to the sea within which the sea water can be diluted, to an extent that is measurable with freshwater from inland. Estuaries and the lands surrounding them are places of transition from land to sea, and from freshwater to saltwater. Although influenced by the tides, estuaries are protected from the full force of ocean waves, winds, and storms by the reefs, barrier islands, or fingers of land, mud, or sand that surround them. South Africa’s estuaries are important and irreplaceable habitats, especially for prawns, fish, wading birds and mangroves. They are home to numerous plants and animals that live in water that is partly fresh and partly salty. Estuaries are also homes to growing coastal communities as increasing number of people occupy watersheds. However, estuaries are also threatened. One of the threats is reduced river water inflow. This study applies the contingent valuation method (CVM) to elicit user’s willingness to pay to mitigate the negative impacts of reduced freshwater inflow into selected five Eastern Cape and Kwazulu-Natal estuaries: the Sundays, Gamtoos, Mdloti, Mgeni and Mvoti estuaries. In addition to the contingent valuation method, the travel cost method was used to generate comparative values. The contingent valuation method is a technique to establish the value of a good (or service) that is not bought or sold in an actual market. The CVM establishes the economic value of the good by asking the users of an environmental good to state their willingness to pay (WTP) for a hypothetical project to prevent, or bring about, a change in the current condition of the environmental good. The users’ WTP is aggregated to establish a total willingness to pay (TWTP) for the population of the users of the environmental good.

Estuaries in South Africa are important nursery areas for the juveniles of many fish species. The condition of many of these systems has, however, deteriorated as a result of degradation caused by urban, industrial and agricultural development. An assessment of the role of harbours, particularly in KwaZulu Natal, as nursery grounds has therefore become an important issue. Durban Bay has undergone considerable changes since the mid-1800s and further developments are proposed. If these developments continue, they will result in the loss of large areas of the sandbanks, but Portnet has recognised the need to integrate environmental considerations into future port developments and operations. It was the overall aim of this study to establish the nature of the association of the juveniles of four common fish species viz. Pomadasys commersonnii, Gerres filamentosus, Liza dumerilii and Leiognathus equula with these sandbanks and, thereby assess the impact of their removal. It was found that all species were abundant on the sandbanks and that the diets of P. commersonnii, G. fiiamentosus and L. equuia were very similar, consisting primarily of bivalve siphon tips, benthic crustaceans and polychaetes. The respective contributions of each food type to the diet varied with species. The diet of L. dumerilii differed from that of the other three species, consisting primarily of benthic floc, foraminiferans, ostracods and sponge spicules. Despite differences in selectivity, it was concluded, from studies of the benthos in the harbour, that all four species, irrespective of size, were feeding on these sandbanks, as opposed to in the channels, throughout the year. Removal of the sandbanks for the construction of a new pier would, thus, result in the elimination of important feeding grounds for the juveniles of these four species. / Thesis (M.Sc.)-University of Natal, 1994.