In vitro cell culture is an essential part of many cell and tissue engineering approaches. In particular, monolayer culture of mammalian cells is a key tool for applications such as cell therapy. Novel bioreactors like the Cellerator(TM) allow for expansion of cell populations on mechanically stimulated surfaces coated with proteins. This thesis constitutes a preliminary study which focused on cell-matrix interactions in the absence of stretch. The aim was to establish standard protocols for protein coating on poly (dimethyl siloxane) (PDMS) and for measuring cell proliferation. Specifically, the proliferation of rat pulmonary artery vascular smooth muscle (PAC1) cells on type I collagen and soluble fibronectin was studied. Growth curves were obtained and the doubling time for subconfluent cultures was computed. Although cell-matrix interactions do not enhance proliferation of PAC1 cells, it was found that a preliminary sulphuric acid treatment is necessary to yield a well-behaved culture.

The extracellular matrix is a vital component of the cardiovascular system, in that, it not only provides structural support but also plays a critical role in the maintenance of cellular stability. One of the major components of the vascular matrix is elastin, which confers vessels with the specialized property of stretch and recoil. Elastin deficiency has been implicated in many vascular diseases and determined experimentally to be a negative regulator of smooth muscle cell proliferation. In zebrafish, two elastin genes have been identified, which are actively expressed during development. Based on this finding, protein production and spatial localization for the two elastin proteins was studied by immunohistochemistry with specific antibodies. Results revealed a global distribution for elastin 1 in the ventral aorta and swim bladder, whereas elastin 2 was preferentially localized to the bulbus arteriosus indicating a possible specialized function of elastin 2 in this structure. This observation, and the unique physiological property of this structure, suggests a possible reason for the preservation of both elastin genes during evolution. / In the second part of this study, elastin-null mice were studied to uncover the impact of the loss of elastin on the expression of other elastic fiber-associated proteins. The expression of fibrillin-1, the major component of microfibrils, was not altered in the absence of elastin, implying that elastin is not necessary for the formation of microfibrils. On the other hand, both fibulin-2 and -5 were upregulated in the absence of elastin, suggesting that expression of these genes are controlled by elastin. Overall, this study highlights the importance of elastin in evolution, as well as its potential role in the regulation of expression of other matrix molecules.

Microorganisms may evade killing by neutrophils (PMNs) by altering signal transduction and hence phagosome maturation. Secreted, active matrix metalloproteinases (MMPs) appear to be required for PMN killing of pseudomonas microorganisms, via an MMP and complement-dependent, but otherwise unknown mechanism. This also depends on the absence of the inhibitor of MMPs, tissue inhibitor of metalloproteinases-1 (TIMP-1). By altering their particular complement opsonin and hence the PMN complement receptor bound, microorganism may evade killing, as not all PMN complement receptors trigger phagosome maturation and hence killing of microorganisms. C1 inhibitor of the classical complement cascade, required for the exposure of C1q and further assembly of complement factors on the bacterial surface and hence binding to specific PMN receptors, is MMP sensitive. MMP secretion may, therefore, not only facilitate the killing of microorganisms, but inappropriate secretion, induced by pathogens, may prevent complement assembly and killing via complement-mediated pathways. It was, therefore, decided to assess MMP-9 and TIMP-1 secretion in the presence of C1q-opsonized polystyrene beads and subsequently upon stimulation with pseudomonas organisms, and explore the relationship between secretion of PMN MMPs (specifically MMP-9) and TIMP-1 and phagocytic uptake and maturation of the PMN phagosome into a killing body. MMP-9 and TIMP-1 secretion was seen to occur at low levels under most conditions. However, in the presence of serum, and hence complement, MMP-9 secretion was found to be upregulated during uptake of C1q-coated beads. MMP-9 possibly inactivates C1 inhibitor at this stage, causing local tissue swelling (normally associated with the inactivation of C1-inhibitor), entry of various white blood cells and further complement into the area of infection, assisting in the extracellular killing of microorganisms. MMP secretion may simultaneously down-regulate the activation of further PMNs via inactivation of C1q assembly and hence phagocytic uptake and activation of PMNs. Unlike MMP-9, secretion of TIMP-1 was not upregulated by C1q receptor binding, implying that any secreted MMP-9 may, therefore, be in excess and hence uninhibited by TIMP-1. A distinct regulatory mechanism seems to be responsible for the release of TIMP-1, though TIMP-1 secretion was upregulated by extracellular calcium levels, partially contradicting previous findings which suggested that TIMP-1 was not calcium regulated. It seems unlikely that extracellular calcium levels would be the only mechanism by which TIMP-1 is regulated, however, and further surface receptor mediated agonists should be explored. Levels of MMP-9 and TIMP-1 secretion in the presence of pseudomonas microorganisms now need to be assessed to see whether these secretion patterns are altered to favour the evasion of opsonization by C1q. Uptake of C1q-opsonized beads was also increased by the presence of serum, possibly due to presence of complement. MMP-9 and TIMP-1 secretion patterns still need to be correlated with phagosomal uptake and killing of microorganisms, before their role in killing of microorganisms becomes fully evident. / Thesis (M.Sc.)-University of Natal, Pietermaritzburg, 2003.

It would be a great advantage in reconstructive surgery to have an off-the-shelf biomaterial to promote regeneration and volume augmentation following soft tissue damage. With this long-term objective, human adipose tissue (fat) is an abundant and accessible source of extracellular matrix (ECM) for bioscaffold fabrication. The main goal of the current research project was to optimize the established 5-day detergent-free decellularization protocol developed by the Flynn group, by shortening it to a maximum of 3 days, while achieving comparable results in terms of cell and lipid extraction with preservation of the ECM. The effectiveness of the optimized protocol was assessed by examination of the decellularized adipose tissue (DAT) and its characteristic biological properties, including in vitro bioactivity assays with human adipose-derived stem cells (ASCs) to measure adipogenic potential, as well as in vivo testing of scaffold biocompatibility. In the optimized approach, the addition of mechanical processing steps including repeated pressing and centrifugation were shown to enhance cell extraction. Fibrous ultrastructure was observed under scanning electron microscopy (SEM) for the original and optimized protocols. The preservation of collagen fibres was assessed with picro-sirius red staining and confirmed by high hydroxyproline content. Enhanced preservation of glycosaminoglycans (GAGs) was determined for the optimized protocol. Residual DNA content was higher in the DAT scaffolds processed with the optimized protocol, including larger DNA fragments that were not typically observed in the samples treated with the original protocol, which incorporated additional enzymatic treatment stages with DNase, RNase and lipase. However, no residual nuclei were visualized through DAPI staining for both protocols. Enhanced removal of DNA was achieved with electron beam (e-beam) sterilization. E-beam sterilization caused some changes in the fine fibrous structure of the ECM, but did not negatively affect the adipo-conductive potential in vitro. In comparison to the original protocol, DAT produced via the optimized protocol exhibited similar adipo-conductive properties in vitro. The in vivo biocompatibility study over a 16 week period using an immunocompetent Wistar rat model showed promising results. DAT implants produced with the original and optimized protocols promoted adipogenesis and angiogenesis, gradually being remodelled to resemble mature adipose tissue. / Thesis (Master, Chemical Engineering) -- Queen's University, 2014-01-30 12:25:22.044

The extracellular matrix (ECM) is a complex of proteins and carbohydrates that not only provides a structural support between tissues but also functions in a wide variety of cellular activities. ECM proteins are large, complex proteins with many repeating domains. Individual domains can be analyzed for the investigation of structure-function relationships. This thesis focuses on two ECM proteins of interest: N-terminal agrin (NtA) and the coiled-coil domain of cartilage oligomeric matrix protein (COMPcc). Agrin is an important ECM protein involved in postsynaptic differentiation at the neuromuscular junction, mediated by binding in the NtA domain. In agrin, the NtA domain is followed by nine follistatin-like (FS) domains. Structural studies showed a novel interdomain disulfide bridge between the NtA and first FS domain in agrin. This disulfide bridge compensates for a seven residue splice insert in the C-terminus of NtA, suggesting that the interdomain disulfide bond may be necessary for the proper folding of agrin. COMP is another important ECM protein that is found in cartilage, tendon, and ligament. It is a homopentamer held together by disulfide bonds in the central coiled-coil oligomerization domain. Previous structural studies demonstrated that COMPcc forms a pentameric α-helical coiled-coil structure containing a 73Å-long cavity with a diameter of 2–6Å that is capable of binding hydrophobic compounds. This binding capacity of COMPcc was investigated and the high-resolution crystal structures of COMPcc in complex with five naturally-occurring fatty acids were solved. Additionally, the binding properties of COMPcc in solution were investigated through the use of fluorescence spectroscopy. Both the x-ray crystallographic and solution data reveal that binding favourability of fatty acids to COMPcc is driven by length of the methylene tail and degree of unsaturation. These results suggest the possibility of COMPcc to be used in targeted drug delivery systems.

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No description available.

The extracellular matrix (ECM) is a complex of proteins and carbohydrates that not only provides a structural support between tissues but also functions in a wide variety of cellular activities. ECM proteins are large, complex proteins with many repeating domains. Individual domains can be analyzed for the investigation of structure-function relationships. This thesis focuses on two ECM proteins of interest: N-terminal agrin (NtA) and the coiled-coil domain of cartilage oligomeric matrix protein (COMPcc). Agrin is an important ECM protein involved in postsynaptic differentiation at the neuromuscular junction, mediated by binding in the NtA domain. In agrin, the NtA domain is followed by nine follistatin-like (FS) domains. Structural studies showed a novel interdomain disulfide bridge between the NtA and first FS domain in agrin. This disulfide bridge compensates for a seven residue splice insert in the C-terminus of NtA, suggesting that the interdomain disulfide bond may be necessary for the proper folding of agrin. COMP is another important ECM protein that is found in cartilage, tendon, and ligament. It is a homopentamer held together by disulfide bonds in the central coiled-coil oligomerization domain. Previous structural studies demonstrated that COMPcc forms a pentameric α-helical coiled-coil structure containing a 73Å-long cavity with a diameter of 2–6Å that is capable of binding hydrophobic compounds. This binding capacity of COMPcc was investigated and the high-resolution crystal structures of COMPcc in complex with five naturally-occurring fatty acids were solved. Additionally, the binding properties of COMPcc in solution were investigated through the use of fluorescence spectroscopy. Both the x-ray crystallographic and solution data reveal that binding favourability of fatty acids to COMPcc is driven by length of the methylene tail and degree of unsaturation. These results suggest the possibility of COMPcc to be used in targeted drug delivery systems.

The formation of the Salmonella extracellular matrix is a multicellular behavior important for environmental persistence. It is comprised of uniquely but ill-defined assembled thin aggregative fimbriae (Tafi), cellulose and uncharacterized polysaccharides. Consequently, investigations were launched into further clarifying Tafi assembly and the polysaccharide constituents of the extracellular matrix. In the Salmonella agfBAC Tafi operon, the transcription and role of agfC has been elusive. In this study using the clinical isolate, Salmonella Enteritidis 27655-3b, agfBAC transcripts were detected using a reverse transcriptase and transcription was not enhanced by replacement of a stem-loop structure immediately preceding agfC. AgfChis was purified, localized to the periplasm, and found to specifically bind noncrystalline cellulose suggesting an association with the extracellular matrix. An inframe ΔagfC mutant displayed an abundance of 20 nm fibers, which could be complemented with agfC in trans, in addition to Tafi and an increase in cell hydrophobicity. Depolymerization of purified 20 nm fibers required exceptionally stringent conditions to release what proved to be AgfA subunits revealing the 20 nm fibers as AgfA assemblages of unique morphology. The role of AgfC in Tafi assembly was investigated further via a novel, quantitative antibody-capture assay of in-frame agf mutants. A soluble antibody-accessible form of AgfA was captured in wt, ΔagfB and ΔagfF strains in support of the extracellular nucleation-precipitation pathway of Tafi assembly, but not in ΔagfC or ΔagfE mutants. These results suggest that AgfC and AgfE are required for AgfA’s extracellular assembly and thus may act as atypical AgfAspecific chaperones which facilitate Tafi assembly. The implications of these results are presented in an assembly model for Tafi. Additional investigations revealed that Salmonella produces an O-Antigen capsule co-regulated with the extracellular matrix. Structural analysis of purified extracellular polysaccharides (EPS) yielded a repeating oligosaccharide unit similar to iv that of lipopolysaccharide O-Antigen with modifications. Putative carbohydrate transport and regulatory operons important for capsule expression, designated emcA-H and emcIJ, were identified by screening a random transposon library with immune serum generated to the capsule. The absence of capsule was confirmed by generating various in-frame Δemc mutants where emcG and emcE were shown to be important in capsule assembly and translocation. Luciferase-based expression studies showed that, AgfD differentially regulated the emc operons in coordination with extracellular matrix genes. Survival assays demonstrated the capsule is important for desiccation tolerance. The emc genes were found to be conserved in Salmonellae and thus, the O-Antigen extracellular matrix capsule may be a conserved survival strategy important for environmental persistence. Finally, a compositionally unique acidic EPS was found associated with the extracellular matrix. In-frame ΔbcsA, ΔemcG and ΔagfA mutants but neither ΔagfAΔbcsA nor ΔagfD mutants bound calcofluor, a β-glucan binding fluorescent agent, suggesting that multicellular behavior itself and not necessarily AgfD alone was influencing EPS expression. A transposon library was screened by ELISA using serum generated against purified EPS. This identified mutations inactivating genes involved in quorum sensing AI-2 degradation, flagella repression and Tafi and TolA expression. All mutations resulted in the loss of multicellular behavior and immunologically decreased levels of Tafi. This is the first report that implicates quorum sensing AI-2 degradation and flagella repression as part of the regulatory circuit for Tafi expression. Together, the results reveal Tafi uses assembly factors to facilitate extracellular polymerization which likely assists the formation of a network of branched, amorphous fimbriae. Tafi together with EPS form the extracellular matrix: Tafi stabilizes the EPS on the microbial communities; EPS imparts it with physical properties such as hydration, charge and diffusion barriers that protect it from adverse environmental conditions such as desiccation and antimicrobials. This probably contributes to Salmonella survival in the environment and facilitates its cyclic lifestyle.

Millions of people around the world suffer from the debilitating effects of inflammatory bone diseases characterized by excessive bone loss due to an increase in osteoclast formation and activity. Osteoclasts are multinucleated cells responsible for bone resorption in health and disease. Arthritic joints also have elevated levels of extracellular matrix proteins affecting the disease progression. The interaction between osteoclasts and the external milieu comprised of extracellular matrix proteins through integrins is essential for modulating the formation and activity of osteoclasts. The focus of this thesis was to elucidate how the interaction between the extracellular matrix proteins and osteoclasts regulates osteoclast formation and activity and the role of alphavbeta3 in this process. In primary rabbit osteoclast cultures, blocking the integrin alphavbeta3 using Vitaxin, an anti-human alphavbeta3 antibody, decreased osteoclast resorption by decreasing osteoclast attachment. Vitaxin’s inhibitory effect on osteoclast attachment was enhanced when osteoclasts were pretreated with M-CSF, a growth factor known to induce an activated conformation of the integrin alphavbeta3. Using the RAW264.7 cell line, the effects of the matrix proteins fibronectin and vitronectin on osteoclast activity were compared to those of osteopontin. Both fibronectin and vitronectin decreased the number of osteoclasts formed compared to osteopontin. Fibronectin’s effect on osteoclastogenesis was through decreasing pre-osteoclast migration and/or fusion but not through inhibiting their recruitment. In contrast, fibronectin induced resorption through increasing resorptive activity per osteoclast in comparison to vitronectin and osteopontin. These stimulatory effects were accompanied by an increase in the pro-inflammatory cytokines nitric oxide and IL-1beta Crosstalk between the signalling pathways of nitric oxide and IL-1betawas suggested by the ability of the nitric oxide inhibitor to decrease the level of IL-1beta which occurred exclusively on fibronectin. Osteoclasts on fibronectin also had a compact morphology with the smallest planar area while vitronectin increased the percentage of osteoclast with migratory morphology and osteopontin induced osteoclast spreading. The increase in compact morphology on fibronectin was associated with a decrease in extracellular pH. Low extracellular pH was found to increase the total time osteoclasts spend in a compact phase. These results show that matrix proteins differentially regulate osteoclast formation, activity and morphology.