Thesis (doctoral)--University of Lund, 1985. / Thesis title-page inserted. Includes bibliographical references (p. 253-265).

This study’s main goal was to evaluate Bacillus subtilis inoculation and mine water irrigation effect on germination, growth, nodulation, physiology and shoot/grain quality of cowpea genotypes exposed to extreme climatic conditions (elevated temperatures). The first experiment evaluated the interactive effect of Bacillus subtilis (BD233) inoculation and elevated temperature on germination indices and plumule lengths of three genotypes (Asetanapa, Soronko and Nyira) of cowpea. The results showed that interaction between B. subtilis (BD233) and temperature significantly (p<0.05) influenced the germination indices (germination percentage (G%), germination index (GI) and germination rate index (GRI)) and plumule length of cowpea seedlings and genotype responses were significantly different. At elevated temperature (35oC), inoculation with B. subtilis (BD233) enhanced seed germination and growth of cowpea. The second experiment evaluated the effect of temperature on growth and nutritional content of cowpea incubated for seven days in a growth chamber. The results showed that when cowpea genotype, Soronko, was incubated at different temperature regimes, the whole plant biomass, shoot carbon and crude protein contents were significantly affected with temperature increases at all three stages of the plants’ life cycle. The results suggest that the pre-flowering (40 DAP) and flowering (90 DAP) stages of cowpea compared to post-flowering (123 DAP) are more susceptible to elevated temperatures (30-35oC). The third experiment evaluated Bacillus subtilis inoculation and mine water irrigation effect on growth, nodulation, physiology and nutritional content of cowpea under glasshouse conditions. The results revealed that the interaction of B. subtilis (BD233) inoculation and mine water (75% AMD) irrigation was significant for the growth, nodulation, stomatal conductance, chlorophyll contents and shoot/grain nutritional quality of cowpea genotypes. In comparison with control, generally, B. subtilis inoculation enhanced the growth, nodulation and yield of all tested cowpea genotypes and irrigation with mine water significantly influenced the mineral contents in both shoot and grain of cowpea. Taken together, findings in this study have implications for cultivation of cowpea, an important candidate for food/nutrition security in Africa, under future climate change scenarios. / Environmental Sciences / M. Sc. (Environmental Sciences)

This thesis is concerned with the UK agro-food system, and in particular the emergence of 'alternative strategies' ('AS') that seek to overcome, or at least circumvent, some of the problems associated with the globalised and industrialised practices on which it is based. Underlying the emergence of these 'AS' is the intention to reconnect the processes of food production and consumption in various ways, and to reconfigure the relationship between producers and consumers. Commercial imperatives remain important within 'AS', but they are overlain with social, cultural and ethical constructs that can significantly influence the motives of those involved, as illustrated by Fair Trade produce which seeks to introduce a sense of equity within the exchange process. This research focuses on the relationship between producers and consumers within the context of Farmers' Markets (FMs). FMs have been used as the portal for this purpose because they are considered to be an exemplar of how producer-consumer relations are being reconfigured within a concrete exchange context. FMs aim to re-locate production within specific localities and specific personal relationships, in an attempt to facilitate produce traceability and give food a sense of identity. In order to examine these emerging relationships, data were drawn from a questionnaire survey of FM managers across the UK, semi-structured interviews with producers and focus group discussions with consumers at five FMs in England. In the first instance the data were interpreted through the notion of 'embeddedness', which established that the exchange process at FMs is modified by social interaction within a localised setting. As this did not permit an explanation of aspects of the relationship that were clearly of value to the participants, but extraneous to their commercial evaluations, the data were also analysed within the notion of 'regard', which established that there were additional benefits to the producers and consumers at FMs, intrinsic to the human-level interaction between them. For example, producers sometimes felt personally valued for the effort they make to produce high-quality food produce. On this basis, it was possible to establish what distinguishes FMs as a retail outlet, in terms of how the producers and consumers relate to each other and to the produce available. In order to better understand the significance of these results within the wider agro-food system, they were subsequently assessed within Conventions Theory (CT). CT is based upon a number of conventions, of which the 'civic' and 'domestic' conventions are of particular relevance in this instance as they I are concerned, respectively, with the general societal benefits of a product, and the development of trust in a product on the basis of attachments to specific places or people. The concept of conventions enables an understanding of how the participants at a FM define the quality of the products to be exchanged between them. However, CT does not specifically address the benefits of regard and so this thesis proposes that a regard convention should be considered, which can specifically incorporate this aspect of quality evaluation. Each of the conventions of quality identified for FMs is the subject of ongoing negotiation, and the concept of a bubble of FM alterity is suggested as a means of understanding the durability of FMs as an 'AS', before their underlying integrity is breached and they cease to have a distinctive identity. In this context, the term bubble is used to convey flexibility and elasticity, whereas alterity means 'otherness' which implies an intention to produce change within the agro-food system.

Wong Wai Mei. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2001. / Includes bibliographical references (leaves 175-192). / Abstracts in English and Chinese. / Declaration --- p.ii / Acknowledgements --- p.iii / Abstract --- p.iv / Abbreviation --- p.vi / Table of Contents --- p.vii / Chapter Chapter 1 --- Introduction --- p.1 / Chapter Section I --- The Making of Genetically Modified Organisms --- p.2 / Chapter 1.1 --- Conventional breeding in agriculture --- p.2 / Chapter 1.2 --- What is genetic engineering? --- p.4 / Chapter 1.3 --- Plant transformation --- p.5 / Chapter 1.3.1 --- Agrobacterium-mediated --- p.6 / Chapter 1.3.2 --- Direct gene transfer --- p.8 / Chapter 1.3.2.1 --- Microparticle bombardment --- p.8 / Chapter 1.3.2.2 --- Protoplasts --- p.9 / Chapter 1.3.3 --- Gene silencing --- p.10 / Chapter 1.4 --- Examples of genetically modified crops --- p.13 / Chapter 1.5 --- Foreign genes commonly found in transgenic plants --- p.14 / Chapter Section II --- Benefits and Environmental Concern of GMOs --- p.17 / Chapter 2.1 --- Mechanism of GMO --- p.17 / Chapter 2.1.1 --- Herbicide tolerant crops --- p.18 / Chapter 2.1.2 --- Insect resistant crops --- p.19 / Chapter 2.1.3 --- Delayed ripening crops --- p.20 / Chapter 2.1.4 --- Virus resistant crops --- p.20 / Chapter 2.2 --- Benefits of GMOs --- p.21 / Chapter 2.3 --- Impact of GM foods to human health and the environment --- p.22 / Chapter 2.3.1 --- Human health --- p.22 / Chapter 2.3.1.1 --- GM potatoes --- p.23 / Chapter 2.3.1.2 --- CaMV risks? --- p.24 / Chapter 2.3.1.3 --- Food allergy --- p.25 / Chapter 2.3.2 --- Environmental concerns --- p.26 / Chapter 2.3.2.1 --- Horizontal gene transfer --- p.27 / Chapter 2.3.2.1.1 --- Selectable marker genes --- p.27 / Chapter 2.3.2.1.2 --- Herbicide resistant genes --- p.29 / Chapter 2.3.2.1.3 --- Insect resistant genes --- p.29 / Chapter 2.3.2.2 --- Ecology --- p.30 / Chapter 2.3.2.2.1 --- Monarch butterfly --- p.30 / Chapter Section III --- Future developments of GMO --- p.32 / Chapter 3.1 --- Designer Food and engineered plants --- p.32 / Chapter 3.1.1 --- Insect resistance --- p.33 / Chapter 3.1.2 --- Viral resistance --- p.33 / Chapter 3.1.3 --- Fungal resistance --- p.34 / Chapter 3.1.4 --- Nutritional quality --- p.34 / Chapter 3.1.5 --- Modifications of oil composition --- p.35 / Chapter 3.1.6 --- Medical applications --- p.37 / Chapter 3.1.7 --- Environmental applications --- p.40 / Chapter 3.1.7.1 --- Tolerance to high salinity and drought --- p.40 / Chapter 3.1.7.2 --- Tolerance to frost --- p.41 / Chapter 3.1.7.3 --- Bioremediation --- p.42 / Chapter 3.1.7.4 --- Biodegradable products --- p.43 / Chapter Section IV --- Regulation of GMO --- p.44 / Chapter 4.1 --- The question of labeling --- p.44 / Chapter 4.1.1 --- Moral and ethical issues --- p.44 / Chapter 4.1.2 --- Animal welfare --- p.45 / Chapter 4.2 --- International practice in GMO labeling --- p.46 / Chapter 4.2.1 --- United States of America --- p.46 / Chapter 4.2.2 --- Canada --- p.48 / Chapter 4.2.3 --- European Union --- p.49 / Chapter 4.2.4 --- Australia and New Zealand --- p.50 / Chapter 4.2.5 --- Japan --- p.51 / Chapter 4.2.6 --- Republic of Korea --- p.52 / Chapter 4.2.7 --- China --- p.53 / Chapter 4.2.8 --- Taiwan --- p.53 / Chapter 4.2.9 --- Hong Kong --- p.54 / Chapter Section V --- Uses of crops --- p.56 / Chapter 5.1 --- Uses of crops --- p.56 / Chapter 5.1.1 --- Soybean --- p.56 / Chapter 5.1.2 --- Corn --- p.57 / Chapter 5.1.3 --- Tomato --- p.58 / Chapter 5.1.4 --- Potato --- p.59 / Chapter 5.1.5 --- Rice --- p.60 / Chapter 5.1.6 --- Rapeseed --- p.61 / Chapter 5.1.7 --- Oil --- p.62 / Chapter 5.2 --- "Food additives, hormones and flavourings" --- p.63 / Chapter Chapter 2 --- Materials & Methods --- p.65 / Chapter 2.1 --- Materials --- p.66 / Chapter 2.1.1 --- Growth media & agar --- p.66 / Chapter 2.1.2 --- Reagents for agarose gel electrophoresis --- p.67 / Chapter 2.1.3 --- Reagents for preparation of competent cells --- p.67 / Chapter 2.1.4 --- Reagents for measurement of DNA concentration --- p.68 / Chapter 2.1.4.1 --- Measurement of DNA concentration by PicoGreen --- p.68 / Chapter 2.1.5 --- Reagents for Southern hybridization --- p.68 / Chapter 2.2 --- Methods --- p.70 / Chapter 2.2.1 --- Restriction endonuclease digestion --- p.70 / Chapter 2.2.2 --- Agarose gel electrophoresis of DNA --- p.70 / Chapter 2.2.3 --- DNA recovery from agarose gel --- p.71 / Chapter 2.2.3.1 --- QIAquick® gel extraction --- p.71 / Chapter 2.2.4 --- Ligation of purified DNA fragment into vector --- p.72 / Chapter 2.2.5 --- Transformation --- p.72 / Chapter 2.2.6 --- Rubidium chloride method for making competent cells --- p.12 / Chapter 2.2.7 --- Plasmid DNA preparation --- p.73 / Chapter 2.2.7.1 --- Concert Rapid Mini Prep --- p.73 / Chapter 2.2.7.2 --- QIAprep® Miniprep --- p.74 / Chapter 2.2.8 --- Extraction of plant genomic DNA --- p.75 / Chapter 2.2.8.1 --- Qiagen DNeasy´ёØ Plant Mini Kit --- p.75 / Chapter 2.2.9 --- Southern Hybridization --- p.75 / Chapter 2.2.9.1 --- Denaturation --- p.76 / Chapter 2.2.9.2 --- Blot transfer --- p.76 / Chapter 2.2.9.3 --- Pre-hybridization --- p.77 / Chapter 2.2.9.4 --- Synthesis of radiolabelled probe --- p.77 / Chapter 2.2.9.5 --- Hybridization of radiolabelled probe on filter --- p.77 / Chapter 2.2.9.6. --- Detection of hybridized probes --- p.78 / Chapter 2.2.10 --- Measurement of DNA concentration --- p.78 / Chapter 2.2.10.1 --- Determination of DNA on EtBr stained gel --- p.78 / Chapter 2.2.10.2 --- Determination of DNA by UV spectrophotometer --- p.78 / Chapter 2.2.10.3 --- Determination of DNA by PicoGreen --- p.79 / Chapter 2.2.11 --- DNA sequencing --- p.80 / Chapter 2.2.11.1 --- Automated sequencing by ABI Prism 377 --- p.80 / Chapter Chapter 3 --- PCR Diagnostics --- p.81 / Chapter 3.1 --- Applications of PCR to processed foods --- p.82 / Chapter 3.1.1 --- DNA quality --- p.82 / Chapter 3.1.2 --- PCR & Multiplex PCR --- p.83 / Chapter 3.1.3 --- Choice of primers --- p.84 / Chapter 3.1.4 --- Inhibitors --- p.84 / Chapter 3.2 --- Materials & Methods --- p.85 / Chapter 3.2.1 --- Selection of primers --- p.85 / Chapter 3.2.2 --- Amplification of target sequences --- p.86 / Chapter 3.2.3 --- Multiple amplification of target sequences --- p.87 / Chapter 3.3 --- Results --- p.88 / Chapter 3.4 --- Discussion --- p.93 / Chapter Chapter 4 --- Quality Control in GMO detection --- p.95 / Chapter 4.1 --- Standardization of pre- and post- PCR analysis --- p.96 / Chapter 4.1.1 --- General guidelines --- p.96 / Chapter 4.1.2 --- UV irradiation --- p.97 / Chapter 4.1.3 --- Inactivation protocols --- p.93 / Chapter 4.1.4 --- Positive and negative controls --- p.99 / Chapter 4.1.5 --- PCR verification --- p.99 / Chapter 4.1.6 --- Equipment decontamination --- p.100 / Chapter 4.2 --- Materials & Methods --- p.101 / Chapter 4.2.1 --- Selection of primers for external control --- p.101 / Chapter 4.2.2 --- Development of the external control --- p.101 / Chapter 4.2.3 --- Selection of primers for internal control --- p.103 / Chapter 4.3 --- Results --- p.104 / Chapter 4.4 --- Discussion --- p.107 / Chapter Chapter 5 --- DNA extraction from food samples --- p.110 / Chapter 5.1 --- Introduction --- p.111 / Chapter 5.2 --- Reagents and Buffers for DNA extraction from food samples --- p.112 / Chapter 5.2.1 --- Cetyltrimethylammonium bromide (CTAB) extraction method --- p.112 / Chapter 5.2.2 --- Organic-based extraction method --- p.113 / Chapter 5.2.3 --- Potassium acetate/sodium dodecyl sulphate precipitation method --- p.113 / Chapter 5.2.4 --- Hexane-based extraction method --- p.114 / Chapter 5.3 --- Weight and names of samples --- p.115 / Chapter 5.4 --- DNA extraction methods --- p.115 / Chapter 5.4.1 --- CTAB extraction method --- p.115 / Chapter 5.4.2 --- Qiagen DNeasy´ёØ plant mini kit --- p.116 / Chapter 5.4.3 --- Promega Wizard® genomic DNA purification --- p.116 / Chapter 5.4.4 --- Promega Wizard® Magnetic DNA purification system --- p.117 / Chapter 5.4.5 --- Promega Wizard® DNA Clean-Up system --- p.118 / Chapter 5.4.6 --- Qiagen QIAshreddrer´ёØ and QIAamp spin column --- p.119 / Chapter 5.4.7 --- Chelex-based extraction method --- p.119 / Chapter 5.4.8 --- Organic-based extraction method --- p.120 / Chapter 5.4.9 --- Nucleon PhytoPure extraction and purification method --- p.120 / Chapter 5.4.10 --- Potassium acetate/SDS precipitation method --- p.121 / Chapter 5.4.11 --- Hexane-based extraction method --- p.122 / Chapter 5.5 --- Results --- p.123 / Chapter 5.5.1 --- Comparison of eleven extraction methods --- p.123 / Chapter 5.5.2 --- Comparison of DNA extraction on selected methods --- p.125 / Chapter 5.6 --- Discussion --- p.132 / Chapter Chapter 6 --- Quantitative Analysis --- p.136 / Chapter 6.1 --- Introduction --- p.137 / Chapter 6.1.1 --- Chemistry of quantitative PCR --- p.138 / Chapter 6.1.2 --- PCR system --- p.140 / Chapter 6.2 --- Materials & Methods --- p.142 / Chapter 6.2.1 --- Design of primers and probes --- p.142 / Chapter 6.2.2 --- Methods --- p.145 / Chapter 6.3 --- Results --- p.146 / Chapter 6.3.1 --- Selection of primer/probe --- p.146 / Chapter 6.3.2 --- Primer optimization --- p.149 / Chapter 6.3.3 --- Quantitative analysis of real samples --- p.158 / Chapter 6.4 --- Discussion --- p.152 / Chapter Chapter 7 --- Conclusion --- p.168 / References --- p.175 / Appendix --- p.193

Thesis (D.Phil.)--University of Oxford, 2008. / Supervisor: Professor Diana Liverman. Bibliography: p. 320-332.

Germination of mung bean, Phaseolus mungo L. , and wheat, Triticum aestivum L., seeds was used for bioassay to demonstrate the toxic effects of selected pesticides--menazon, disulfoton, and GS-14254-- and allergens-- alantolactone and usnic acid. The ability of gibberellic acid to counteract the toxic effects of these chemicals on germination and seedling growth was studied. Chemical composition of the treated and untreated seeds was made with special attention to starch and protein degradation. Effect of these toxicants on the synthesis of amylase, ATPase, and protease enzymes during germination was studied since these enzymes are synthesized de novo during germination. To ascertain their effect on protein synthesis in storage tissue of the germinating seeds, uptake and incorporation of 14C-L-leucine into protein was studied in potato tuber slices and germinating mung beans. Correlation of biochemical data and histochemical changes in the treated and untreated seeds of mung bean was obtained with menazon and usnic acid. Furthermore, ultrastructural changes were studied in order to relate functional and structural changes in the seeds .in conjunction with phytotoxic actions of these chemicals. Among the insecticides, menazon (250 ppm) was found to be more toxic to both species than was disulfoton. GS-14254 (100 ppm) also was equally inhibitory to seed germination and seedling growth of mung bean and wheat seeds. When a solution of the herbicide GS-14254 (100 ppm) was added to either of the insecticides at their maximum concentrations the inhibitory effect of the combined pesticides on seed germination and seedling growth was more pronounced, especially with wheat. Usnic acid (50 to 250 mg/1) and alantolactone (100 mg/1) significantly inhibited germination and root and shoot growth in both mung bean and wheat seeds. These two compounds appeared to be more phytotoxic than the pesticides. Gibberellic acid partially counteracted the inhibitory effects of the pesticides and allergens, thus these chemicals showed no antiauxin activity. Before any growth is observed there is a marked increase in respiration during germination that releases energy from food materials already present in usable form in the cells. At their maximum concentrations, menazon, disulfoton, GS-14254, alantolactone, and usnic acid significantly blocked the respiration of the germinating seeds at the end of 72 h after treatment. In all cases except alantolactone respiration of wheat seeds was considerably more affected than that of the mung beans. Compared to control seeds, pesticide chemicals as well as allergenic compounds caused significant reduction in the amounts of soluble reducing sugars and free amino acids after 72 h germination period. Similarly, starch degradation was less in the treated seeds. Among the species of seeds, considerably less amounts of reducing sugars and amino acids were formed in the pesticide-treated wheat seeds than in the mung beans as compared to their respective controls. Such differences in the inhibitory effects were not observed in seeds treated with allergenic compounds. The development of amylase and ATPase activity in the seeds treated with maximum concentrations of pesticides tended to be lower than that in the control seeds. In case of menazon, inhibition of amylase activity was more pronounced than that of disulfoton or GS-14254. Proteoiytic activity in control and disulfoton- and menazon-treated seeds was not significantly different during germination period, but in case of GS-14254, it was considerably lower. Usnic acid at highest concentration tested completely inhibited the development of amylase activity in mung beans whereas it was significantly lower in seeds treated with the maximum concentration of alantolactone. The inhibition of amylase activity in wheat seeds treated with these compounds was more or less similar. ATPase inhibition in seeds treated with usnic acid was more severe than that in alantolactone treated seeds. However, proteolytic activity in control and treated seeds showed almost the same trend during the germination period. The activity per se of amylase isolated from mung bean and wheat seeds germinated for 3 days was not significantly inhibited by the presence of the pesticides or allergens in the reaction mixture indicating that these chemicals do not inhibit already synthesized amylase enzyme. Observations with potato tissue and germinating mung beans indicated that both total uptake and incorporation of 14c-L-leucine into protein were significantly inhibited by menazon, disulfoton, GS-14254, and alantolactone. On the other hand, the uptake in germinating mung bean treated with usnic acid was not affected although both uptake and incorporation were inhibited in potato tissue. Menazon and usnic acid were then selected as the representative chemicals for pesticides and allergens, respectively, and their toxic effects were studied histochemically in 3-day germinating mung beans. It was observed that total nucleic acid content and RNA content in seeds treated with these chemicals were considerably less than that in the control seeds. Similarly, treated seeds showed more starch grains and protein bodies indicating less metabolic activity in these seeds. At the ultrastructural level, menazon- or usnic acid-treated mung bean cotyledons at day 3 of germination contained no vacuoles but many undigested protein bodies were observed. In contrast, fully developed mitochondria, endoplasmic reticulum with ribosomes, and vacuoles were seen in control cells indicating protein (enzyme) synthesis and digestion of the food reserves.

Cultivation of Napier grass, Pennisetum purpureum, the most important livestock crop in East Africa is severely constrained by Napier Grass Stunt (NGS) disease. The disease spreads via an insect vector or vegetative propagation of infected plant material and is caused by a phytoplasma. This necessitates the development of an integrated management approach for the disease. Therefore, objectives of this study were to assess the incidence of the disease and its severity, to identify its wild hosts and farmers‟ knowledge on these hosts, to assess the threat of NGS disease to cultivated grasses and to establish the role of wild inoculum sources in its spread. The study showed NGS incidence ranging from 33% in Uganda to 95% in Kenya with 49% of the farmers interviewed, being able to discern NGS disease by its symptoms. Most farmers cited roguing and use of alternative fodder grasses as control measures, making these strategies the likely components of an integrated management approach for the disease. Responders named Sedge grass (Cyperus spp.) and Star grass (Cynodon dactylon) as the likely hosts of diseases caused by phytoplasma. Phytoplasmas were detected in leaves of 11 of 33 wild grass species collected using polymerase chain reaction (PCR) based on the highly conserved phytoplasma-specific 16S ribosomal DNA fragment. Sequence determination of amplified PCR fragments revealed the presence of NGS-related phytoplasmas in 11 grass species, Bermuda grass white leaf (BGWL) phytoplasmas in three and goosegrass white leaf (GGWL) in two wild grass species, showing that the geographical distribution and diversity of phytoplasmas and their grass hosts are greater than previously thought. The relationships between NGS and Hyparrhenia grass white leaf (HGWL) phytoplasmas were determined using sequences based on secA gene and immunodominant protein (imp). Results showed a very low genetic diversity between NGS and HGWL and produced a phylogenetic tree congruent to that produced by the 16S, affirming the inclusion of HGWL in the 16SrXI group. NGS phytoplasma was transmissible to food crops through Maiestas banda Kramer (Hemiptera: Cicadellidae) under screen-house conditions. With 56.3%, Saccharum officinarum showed the highest infection level followed by Eleusine coracana with 50%, Sorghum bicolor with 43.8%, Oryza sativa with 31.3% and Zea mays with 18.8%. All the phytoplasma-infected plants were asymptomatic except S. officinarum plants, which showed mild to moderate symptoms consisting of foliar yellow leaves and bright white or yellow midribs. This hints that besides wild hosts, food crops may also serve as alternative source of inoculum enabling a complex NGS disease cycle, which may add to challenges in the development of the disease control strategies. However, failure by M. banda to transmit HGWL and BGWL phytoplasmas back to Napier grass is an indication that it could be the exclusive vector of NGS. Therefore, there is need to initiate transmission trials using planthoppers and leafhoppers occurring on HGWL and BGWL phytoplasma-infected grasses to determine whether insect vectors capable of transmitting phytoplasmas from native grasses to Napier grass, are present in the region. / PhD (Environmental Sciences), North-West University, Potchefstroom Campus, 2015

Cultivation of Napier grass, Pennisetum purpureum, the most important livestock crop in East Africa is severely constrained by Napier Grass Stunt (NGS) disease. The disease spreads via an insect vector or vegetative propagation of infected plant material and is caused by a phytoplasma. This necessitates the development of an integrated management approach for the disease. Therefore, objectives of this study were to assess the incidence of the disease and its severity, to identify its wild hosts and farmers‟ knowledge on these hosts, to assess the threat of NGS disease to cultivated grasses and to establish the role of wild inoculum sources in its spread. The study showed NGS incidence ranging from 33% in Uganda to 95% in Kenya with 49% of the farmers interviewed, being able to discern NGS disease by its symptoms. Most farmers cited roguing and use of alternative fodder grasses as control measures, making these strategies the likely components of an integrated management approach for the disease. Responders named Sedge grass (Cyperus spp.) and Star grass (Cynodon dactylon) as the likely hosts of diseases caused by phytoplasma. Phytoplasmas were detected in leaves of 11 of 33 wild grass species collected using polymerase chain reaction (PCR) based on the highly conserved phytoplasma-specific 16S ribosomal DNA fragment. Sequence determination of amplified PCR fragments revealed the presence of NGS-related phytoplasmas in 11 grass species, Bermuda grass white leaf (BGWL) phytoplasmas in three and goosegrass white leaf (GGWL) in two wild grass species, showing that the geographical distribution and diversity of phytoplasmas and their grass hosts are greater than previously thought. The relationships between NGS and Hyparrhenia grass white leaf (HGWL) phytoplasmas were determined using sequences based on secA gene and immunodominant protein (imp). Results showed a very low genetic diversity between NGS and HGWL and produced a phylogenetic tree congruent to that produced by the 16S, affirming the inclusion of HGWL in the 16SrXI group. NGS phytoplasma was transmissible to food crops through Maiestas banda Kramer (Hemiptera: Cicadellidae) under screen-house conditions. With 56.3%, Saccharum officinarum showed the highest infection level followed by Eleusine coracana with 50%, Sorghum bicolor with 43.8%, Oryza sativa with 31.3% and Zea mays with 18.8%. All the phytoplasma-infected plants were asymptomatic except S. officinarum plants, which showed mild to moderate symptoms consisting of foliar yellow leaves and bright white or yellow midribs. This hints that besides wild hosts, food crops may also serve as alternative source of inoculum enabling a complex NGS disease cycle, which may add to challenges in the development of the disease control strategies. However, failure by M. banda to transmit HGWL and BGWL phytoplasmas back to Napier grass is an indication that it could be the exclusive vector of NGS. Therefore, there is need to initiate transmission trials using planthoppers and leafhoppers occurring on HGWL and BGWL phytoplasma-infected grasses to determine whether insect vectors capable of transmitting phytoplasmas from native grasses to Napier grass, are present in the region. / PhD (Environmental Sciences), North-West University, Potchefstroom Campus, 2015

This study addresses the issue of soil fertility maintenance in relation to crop yield and farm income growth in general in the west African semi-arid tropics. It describes the structural and the input-output characteristics of food crop production and soil fertility management inside a typical village of southern Upper-Volta and then proceeds to infer from cross-section variations the relationships among the existing soil fertility management practices, soil fertility, crop yields, farm income, resource productivities and the average intensity of land utilization. These inferences are used to identify the technical changes as well as the input and output substitutions that characterize the adjustment mechanism of the cropping system vis-a-vis land use intensification. The technical, social and economic factors that explain and constrain the maintenance and the improvement of soil fertility and thereby limit the growth and the development of the cropping system are pointed out together with the types of agricultural research orientations and rural development policy actions that are most needed to effectively and efficiently relax the major constraints. The cropping system has been shown to be composed of five soil-crop management rings, with varying intensities of land utilization, that conceptually surround the household's habitat. Physical measures of soil fertility suggested that the cropping system more or less maintains or improves the chemical fertility of soils on upland but fails to do so on lowland. However, on upland and over the long term, an intensification of cultivation may have some adverse effects on the physical status of the soil and lead to a decline in field capacity. Statistical measures of yields, farm income and resource productivities following the intensity of land use scale suggested than an increase in the intensity of land utilization caused by an increasing demand for arable lands has no adverse effect on crop yields, farm income and resource productivities. This is made possible by the adjustment mechanism of the cropping system vis-a-vis land use intensification. The main feature of the adjustment process is besides out-migration, a substitution of red sorghum for millet and white sorghum, accompanied by a substitution of mineral and organic fertilizers for fallow.

Long-term low-level ingestion of cadmium (Cd) causes human health problems, and in Australia, vegetables supply ~40% of the Cd in the typical diet. Plants take up Cd from the soil; however, the uptake is poorly predicted by simple soil tests, such as the total concentration of Cd (Cdt). Therefore, a greater understanding of Cd behaviour in soils is needed to improve the prediction of Cd uptake by plants and open a new path to minimise the risks for human health. The objectives of the research in this thesis were to: identify key soil properties affecting Cd behaviour, identify/develop selective methods to measure them, and to formulate a conceptual model of Cd partitioning. These objectives were based on the hypothesis that empirical modelling informed by a better understanding of Cd chemistry would accurately describe Cd partitioning in soil. To test the hypothesis, the key properties were measured on soils from the peri-urban fringe of Greater Sydney (n = 41) and a series of models of increasing complexity were fitted to the data. A model with three explanatory variables— log10 Cdt, pH and log10 ECEC (effective cation exchange capacity)—explained 94.6% of variation in log10 CdCa (the concentration of Cd in solution in a suspension of soil in 10 mM CaCl2), which strongly supported the hypothesis. The study also indicated that the explanatory variables, Cdt, pH and ECEC, may describe Cd behaviour in many soils, and that for these general models, partition coefficients, such as log10 (Cdt/CdCa), are unsuitable dependent variables. The preceding model used Cdt as an explanatory variable, notwithstanding that labile Cd (CdE) was mechanistically preferable. However, CdE can only be measured using isotopic techniques: a requirement that has constrained the evaluation of CdE as an index of Cd behaviour and bioavailability. Therefore, a simple proxy measure of CdE was investigated. The literature indicated that solutions of chloride salts might selectively extract CdE, and Cd extracted into 1 M NH4Cl (CdNH4Cl) was compared with CdE measured by stable isotope dilution ICPMS. For 23 soils from the partitioning study, 1 M NH4Cl failed to completely extract CdE, unless the pH was less than 5. The cause(s) of this effect will be investigated with the aim of developing a universally applicable measure of CdE that does not require isotopic measurements. All models of Cd uptake by plants rely on soil properties measured on homogenised samples, although the distribution and bioavailability of Cd vary spatially in the field. Were such variability to increase at the micro-scale, its effects could erode the accuracy with which models could predict Cd behaviour and uptake. Consequently, I tested whether the distribution of Cd could be mapped by using synchrotron micro-x-ray fluorescence spectroscopy (micro- XRFS): the most sensitive method of observation. The soils examined contained 0.3–6.4 mg Cd/kg, i.e. were typical agricultural soils, and one was spiked to ~100 mg Cd/kg. Micro-XRFS mapped the Cd in the spiked soil, and in one particle in the other soils. For typical agricultural soils, the sensitivity realised in this study would have been sufficient to characterise the average Cd binding site, but fell at least 10-fold below that needed to map the Cd distribution in them. The research satisfied the objectives, advanced knowledge of Cd behaviour in soils, and provided new research leads. These leads include the possibility of developing general models of Cd partitioning in soils, derivatives of which may predict Cd uptake by plants. The accuracy of these models may be strengthened by the use of CdE as an explanatory variable, but may be weakened by the effects of in situ variation in the distribution of Cd. The benefits to human health of agricultural practices that decrease dietary Cd justify continuation of research to develop models that accurately predict Cd uptake by plants. / Doctor of Philosophy (PhD)