M.Sc. (Zoology) / Please refer to full text to view abstract

D.Sc. (Zoology) / Please refer to full text to view abstract

D.Sc. / Please refer to full text to view abstract

The biology of three large cyprinid fishes, Barbus holubi, B. kimberleyensis and Labeo capensis, was studied in a large turbid man-made lake on the Orange River, South Africa. The influence of environmental fluctuations on population dynamics was examined in relation to biological adaptations. On this basis inferences were made about the effect exploitation would have on the populations, and management alternatives were considered. Lake Ie Roux is situated in a semi- arid area, downstream from another large reservoir, Lake Verwoerd. In the pristine river, flooding is seasonal, and floodwaters carry a heavy silt load. Lake Verwoerd acts as a silt-trap and changes in turbidity in Lake Ie Roux (Secchi disc readings range from 15 to 160 cm) are influenced by hydrological management and are not necessarily seasonal. Water temperatures in the regulated river connecting the two lakes depend on the pattern of water release, and fluctuations in Iake levels depend on management practices. Reproduction was studied by examination of gonads and from the distribution of newly hatched juveniles. Age and growth was interpreted from the reading of scales and otoliths. Relative year class strength, dispersal and mortality were monitored using catch data from a regular, standardized gillnetting survey. The Barbus species spawn in the regulated river in spring or summer. Spawning is coordinated for a large part of the population and B. holubi spawn four to six weeks earlier than B. kimberleyensis. The juveniles are 'initially found along the shoreline, but later move into the pelagic zone and disperse throughout the lake. Year class strength is dependent on time of spawning and a late spawning results in a poor year class. For this reason, year class strength of B. kimberleyensis is generally poor, but there is a greater variation in year class strength of B. holubi, which is the dominant large Barbus. The two Barbus species exploit the pelagic zone, visually predating on zooplankton. When turbidity increases large scale mortalities occur, especially in B. holubi. Mortalities more than compensate for the reduction in carrying capacity, and the size of the reduced population may be inversely related to initial abundance. Growth rate is similarly affected by turbidity and density, and size at sexual maturity in B. holubi is reduced when growing conditions deteriorate. Labeo capensis do not form a homogenous population in Lake le Roux. Spawning occurs throughout the lake, but is erratic, probably depending on local rainfall. At each locality, more than one spawning may occur during spring and summer because of temporal variation in gonadal development. Juvenile survival appears to be mainly dependent on water level fluctuations, and strong year classes were formed when the lake was filling during the first two years. Subsequent year classes were weak. Subadult and adult B. capensis are herbivorous and depend on autochthonous production for food. They are relatively sedentary, but when turbidity increases fish smaller than 200 mm disperse, probably in response to food shortages. Mortality rates may be accelerated but mortalities are not as high as in B. holubi. The growth rate of B. capensis is variable and depends on turbidity and population density. Size at sexual maturity remained relatively constant during the study period. B. holubi has a relatively fixed reproduction cycle in Lake le Roux and exploitation is likely to dampen fluctuations in population density. Population growth and stability could be further promoted through hydrological management. B. kimberleyensis does not represent an exploitable population in Lake le Roux, although the large size obtained by this species (>3 kg) may be an attraction to anglers. B. capensis does not appear to have the potential to withstand sustained exploitation because of its erratic and generally poor reproductive success. However, the species is long-lived and can sustain relatively high densities under harsh conditions because of its relatively low mortality rates. It was concluded that harvesting of B. holubi must be flexible to promote maximum benefits to commercial and recreational fisheries, but B. capensis which is not an angling species, should chiefly be exploited when catches of B. holubi are poor, but left to recover in between. An alternative management strategy would be to commercially exploit the fish populations of several reservoirs. A monitoring programme could be established to decide when each reservoir is to be exploited to see to the interests of commercial and recreational fishing alike.

M.Sc. / Please refer to full text to view abstract

Distribution patterns and levels of genetic diversity in extant taxa are a product of complex palaeogeographic processes and climatic oscillations as well as the species’ intrinsic ecological adaptations. The Cape Floristic Region of South Africa presents a unique system for studying the processes that promote species diversification and distribution patterns. This region has a high degree of endemism of both terrestrial and aquatic biota and is clearly isolated from neighbouring areas by the Cape Fold Mountains and the Great Escarpment. The objective of this study was to firstly examine the ecology of freshwater fishes belonging to the genera Galaxias, Pseudobarbus and Sandelia in the south-western CFR. This was followed by an assessment of the genetic diversity of these taxa. Unique lineages were identified and their distribution was mapped. The work aimed to explore the role of the region’s complex palaeogeographic and climatic history as well as the role of the species’ ecological adaptations in driving lineage diversification and shaping contemporary distribution patterns. The four main components of the study can be summarised as follows: 1. Habitat associations of three widely distributed lineages of Galaxias zebratus Pseudobarbus burchelli and Sandelia capensis were evaluated at multiple localities in minimally disturbed mountain tributaries of the Breede, Duiwenhoks and Goukou River systems. The lineages have distinct habitat associations which were related to differences in their morphological traits. The slender-bodied Galaxias ‘nebula’ and the fusiform-shaped Pseudobarbus ‘Breede’ are capable of exploiting upper reaches with faster water velocity. By contrast, the laterally compressed Sandelia ‘eastern’ is restricted to lower reaches, making this lineage more susceptible to a wide array of impacts. 2. A recently discovered lineage of Galaxias zebratus, (Galaxias ‘nebula’), was found to be capable of tolerating emersion for a prolonged period of time. This is the first time that such capabilities have been documented in an African galaxiid. These adaptations have implications for the interpretation of Galaxias ‘nebula’s wide distribution range. 3. The phylogeography of Galaxias ‘nebula’ across its entire distribution range was investigated using two mitochondrial genes (cytochrome c oxidase subunit I (COI) and cytochrome b (cyt b)). This lineage has a complex evolutionary history that was influenced by both intrinsic and extrinsic factors. Rare events such as episodic drainage connections during Pleistocene and Holocene pluvial periods, possibly augmented by river confluences during periods of lower sea-levels and river capture events seem to be the most credible explanation for the extensive contemporary distribution and the relatively shallow genetic divergence between different river systems. 4. Mitochondrial cyt b sequences were used (i) to assess genetic diversity in G. zebratus, P. burchelli and S. capensis from the south-western CFR and (ii) to determine the roles of intrinsic ecological adaptations and extrinsic landscape and climatic changes in promoting genetic diversification and shaping present day distribution patterns of lineages in the three taxa. Marine incursions during periods of major sea-level transgressions are proposed to have isolated populations in upland refugia, thereby driving allopatric divergence in these species. Subsequent connections of rivers during wetter periods and lower sea-levels are proposed to have facilitated post-speciation dispersal of lineages to attain present day distribution patterns. While detailed morphological studies and further genetic analysis are needed to substantiate the taxonomic status of the newly discovered lineages of Galaxias zebratus, Pseudobarbus burchelli and Sandelia capensis, results of the present study indicate that the south-western CFR represents a previously unrecognised centre of freshwater fish diversity and microendemism in the broader Cape Floristic Region. Accurate identification of lineages and comprehensive mapping of their distribution is a fundamental pre-requisite for ecological studies, assessing conservation status and implementation of appropriate conservation measures.

M.Sc. (Zoology) / An investigation was made into the ecology of Barbus brevipinnis and Opsaridium zambezense in the Incomati River System in the Eastern Transvaal. Special attention was given to factors which may threaten the existence of both species. New information was collected on aspects concerning their length:mass relationship, condition, fecundity, feeding habits as weIl as parasites. Measurements were made of the standard, fork and total lengths of both species, which in each case was related to the specific mass of the fish. Both species are, according to the information obtained, capable of successive spawning over an extended period during the breeding season. This implies that the evaluation for fecundity according to standard procedures may in both species be conservative in terms of estimates of the total numbers of eggs produced during the breeding season. Indications are, however, that of Zambezense may produce relatively low numbers of eggs and this as weIl as certain environmental factors, may in combination explain the relative scarcity of this fish in the Inkomati River System. Environmental pollution may further complicate this issue. One of the main objectives of this study was to investigate the habitat requirements of both species. In doing so, both species can now be better defined in terms of certain biological requirements as welI as environmental conditions under which they occur. It is hoped that this information may contribute towards a better understanding of the environmental conservation status of both species. The scarcity collection of studies into including GSI. of both species prohibited the large scale specimens normally required to enable intensive factors such as feeding, growth and breeding, It was therefore not possible during this study to obtain an accurate assessment of parameters such as fecundity, which should be investigated in more detail if and when material on both species becomes available. Recommendations are made concerning morphometric and electrophoretic investigations of both species in order to evaluate their species status more accurately. It is suggested that the habitats where B.brevipinnis and O.zambezense occur be closely monitored in future to observe any further deterioration which may be caused by agricultural and mining activities. It is recommended that because of the relative scarcity of Zambezense in the Inkomati River System, and to the apparent sensitivity of this species to environmental disturbance of its habitat, its conservation status be changed from indeterminate scarce to vulnerable.

The introduction of instream biological monitoring to water resources management has been an increasing trend world-wide. This monitoring uses biological field assessments of instream biota such as macroinvertebrates, fish and riparian vegetation as an integrated and sensitive tool for diagnosing the condition of the ecosystems and assessing ecological impacts. Biomonitoring information has become an important component in the overall assessment of water resources and is used to drive and direct processes of decision-making and management of water resources. The River Health Programme (RHP) was initiated in South Africa to serve as a source of information regarding the ecological status of river systems, in order to support rational management of these natural resources. In this study, biomonitoring indices (SASS5 and FAII) were used to assess the present ecological status of two rivers located in contrasting catchments of the Eastern Cape. The first river is the Buffalo River located in an urban and industrialized catchment. The second river is the Inxu River draining a rural and afforested catchment. SASS5 was used successfully in both rivers and the results based on water quality and SASS5 indicated that most sites selected on the upper catchment of the Buffalo River have a fair water quality with most sites selected on the lower catchment having a poor water quality. The Inxu River sites (both upper and lower catchment) based on SASS5 and water quality results have a good to fair water quality. The majority of sites sampled on both rivers systems had very low FAII scores and fell within a critically modified water quality category. This result may be due to the fact that these rivers have low fish diversities (either low natural diversity or low diversity due to the presence of alien fish species), poor water quality or inadequate sampling methods. Observations from this study suggest that this index may not be suitable for rivers with low fish diversity. A fish index that is usable to all ecoregions of South Africa with minor adaptations to suit local conditions is still needed, as the present FAII index does not meet these requirements.

M.Sc. Aquatic Health) / The Klip River runs past heavy urbanization and industrialization as a consequence it is possibly one of the most abused river systems in Gauteng and perhaps the country as a whole. Eight sites were selected along the course of the Klip River for biomonitoring purposes. The sites were selected to represent the upper, middle and lower reaches of the river, while sites representing point source pollution sources were also included. Various biomonitoring techniques have been included to determine the present ecological state of the Klip River. This includes biotic indices to assess the ecological integrity of the fish and invertebrate communities and the habitat. In addition, fish health was assessed using a variety of histological, biomarker and bioaccumulation based assessments. From the results it is evident that the sites on the Klip River represent the three main regions of a river including headwaters, middle reaches and a mature river. These natural changes in river ecology also caused natural variations in the habitat availability and the resultant biotic communities. There were, however, many changes not related to these natural variations but rather the numerous anthropogenic activities present on the river. The most noticeable change has occurred due to alteration in the flow regime. These changes are brought about by the many weirs and bridges in the system, return flow from the numerous settlements and agricultural activities and the various WWTW. These alterations in flow have caused serious erosion of the stream banks and may lead to siltation of the system. It is clear from the results of the sediment particle size analysis that there is an increase in the percentage contribution of medium and very fine sand below site 3. This is a good indication that the increased flow below the Olifantsvlei WWTW is already causing siltation. Ultimately this can lead to loss of riffle habitat within the river. These flow alterations have also caused an alteration to habitat availability and quality and as a result caused a modified invertebrate community. The macroinvertebrate community at all the sites (below site 1) consisted of taxa that are tolerant to pollution. This is also reflected in the poor SASS 5 and ASPT scores observed at the various sites. These tolerant organisms probably occur in the system due to an altered habitat template and a change in water quality. It is important to note that although the values obtained for the water quality variables are within the TWQR that the oxygen saturation at some sites decreased. These sites included the sites below the Olifantsvlei WWTW, after the confluence with the Rietspruit and the last monitoring site. The Fish Health Assessment Index scores were the highest at site 3 and decreased to site 8. This indicated that the fish condition improved from site 3 to site 8. However, there was a large variation in the index scores from the individual specimens. The results of this assessment cannot be compared to other studies as no fish health assessment index has been applied on the Klip River. This study will serve as a baseline assessment for future studies of the fish health of the Klip River. The results of the metal analysis in the fish muscle tissue indicated relatively low levels that correspond to levels measured by Kotze (1999) while still being lower than fish sampled from the polluted Olifants River. It is therefore recommended that further studies be completed on the fish health of the Klip River and that the fish health of specimens in the Klip River is compared to those of the Vaal River to determine the impact of the Klip River system on the Vaal River. As it has become clear that the Rietspruit also influences the water quality of the Klip River it is recommended that further studies be completed on the Rietspruit to determine the cause of the impacts. Because the histological alterations identified may be the result of a range of different biological and/or chemical stressors, it is difficult to assign specific causative agents for the various alterations identified. Based on the selected parameters investigated, the results show that fish in the Klip River appears to be in a relatively healthy condition and the organs seem to be in a functional state. Establishing a histology-based monitoring programme for fish health in the Klip River, by incorporating appropriate sample sizes and various fish species is recommended. Monitoring of biological responses for assessing the significance of pollutants has become a reasonable measurement in biomonitoring, and use of biomarker responses has played a significant role in this aspect. However, no biomarker has been validated as a unique tool to determine the effects of pollutants on organisms. Furthermore, it is necessary to understand how bioaccumulation and biomarkers relate to each other on exposure to specific pollutants and how it varies between species, to interpret the effects of pollutant exposure in both the field and laboratory. The results obtained in this study indicate that there are definite impacts on the entire system, although these have not altered fish biology and functionality to a large extent. However, sample size should be considered when evaluating individual biomarker responses, as a larger sample size will be more representative of the resident fish community’s response to the pollutants and other stressors. It is difficult to assign specific stressors for the various biomarker responses identified. It is recommended that further biomarker studies be undertaken on the Klip River to increase the level of confidence in the results obtained.

M.Sc. (Zoology) / Please refer to full text to view abstract