Genotypic diversity within populations can have important evolutionary consequences, but the ecological effects of intraspecific genetic variation on community and ecosystem function have only been studied in a few systems. I present the results of a three-year study designed to address the ecological impacts of genotypic diversity in quaking aspen (Populus tremuloides Michx.), using aspen genotypes planted across genotypic diversity levels (monoculture and mixture) and watering treatment levels (well-watered and water-limited). First, I demonstrated that significant variation exists among genotypes for a wide range of growth, morphological and physiological traits, and quantified high heritability and coefficient of genetic variation values for those traits. This demonstrates that heritable phenotypic variation exists within an aspen population, which could potentially have community and ecosystem implications. Secondly, I collected ground-dwelling arthropods across experimental treatment levels to determine if there are any community-level implications of genotypic diversity and watering treatment. Ground-dwelling arthropods were significantly affected by the genotypic diversity × watering treatment interaction, such that arthropod taxonomic diversity was lowest in water-limited genotypic mixtures. This result runs counter to the bulk of the plant diversity-arthropod diversity literature, which predicts that plant and arthropod diversity should be positively correlated, and highlights the importance of environmental conditions in mediating the plant-arthropod diversity relationship. Lastly, I show that there are no overall effects of genotypic diversity or watering treatment on tree growth patterns. Instead, there are high levels of variation among genotypes in their responses to treatments (significant genotype × diversity × watering treatment interactions), which are often opposing in direction. I also show that there are significant collection site × diversity × watering treatment interactions, demonstrating that genotypes vary in their response to experimental treatments based in part on their original collection site conditions in the field. This study demonstrates that aspen populations contain high levels of genotypic diversity, but that the ecological effects of genotypic diversity are mediated by the environment (in this case, watering treatment) and can be considerably more complicated than found in most previous studies.

Agricultural production among the Native American populations of the Southwest declined significantly during the twentieth century. Corn, beans and squash, the three most recognized traditional food crops, remains widespread, but knowledge regarding the traditional management of these crops was lost. The loss of traditional knowledge for Southwest Indigenous Nations was more pronounced for the Southwest peach (Prunus persica) and Navajo spinach (Cleome serrulata Pursh). The Navajo, Hopi, and Zuni Nations are all seeking to increase the availability of traditional crops for their original uses, such as for food and wool dye. In order to revitalize traditional agriculture for these tribes, information regarding these crops was gathered, including: variety characterization, the horticultural basis for traditional management practices, and cultural uses and significance. Southwest peach orchards were located for seed and plant material collections to characterize their genotype and relate them to modern peach cultivars. Traditional farmers were interviewed on management practices and irrigation strategies to correlate to dendrochronology (tree-ring analysis) techniques. Dendrochronology samples included tree stumps or cores to evaluate ring growth variability, age, and life span of the orchard trees. Navajo spinach seed was collected from Chinle, Arizona for germination studies on overcoming seed dormancy. Information on both Southwest peach and Navajo spinach will be useful to encourage culturally important traditional crop management.

京都大学 / 0048 / 新制・論文博士 / 博士(農学) / 乙第12986号 / 論農博第2826号 / 新制||農||1038(附属図書館) / 学位論文||H28||N4961(農学部図書室) / 32456 / 名古屋大学大学院農学研究科生化学制御専攻 / (主査)教授 祝前 博明, 教授 今井 裕, 教授 廣岡 博之 / 学位規則第4条第2項該当 / Doctor of Agricultural Science / Kyoto University / DFAM

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第19545号 / 理博第4205号 / 新制||理||1603(附属図書館) / 32581 / 京都大学大学院理学研究科生物科学専攻 / (主査)教授 村山 美穂, 教授 幸島 司郎, 教授 伊谷 原一 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DFAM

The clouded apollo (Parnassius mnemosyne) is a palearctic butterfly with a wide distribution across Eurasia. In recent decades, however, the species has declined in many parts of its distribution range. In Sweden, both the distribution and populations size of the clouded apollo has decreased dramatically over the past two decades, mainly due to habitat loss resulting from changes in land use practices. Today, only three geographically isolated populations remain in Sweden, as well as one captive population. While previous studies have explored the population genetics of other clouded apollo populations across Eurasia, little is known about the genetics of the remaining populations in Sweden. Here we make use of whole genome resequencing data from clouded apollo individuals collected in each of the three natural populations as well as the captive population. We apply population genetic analyses and explore mitochondrial gene data when mapping to two different reference genome assemblies, to get a better understanding of the genetic structure and levels of genetic diversity of the populations in Sweden. Our results show that the clouded apollo populations in different geographic regions harbour similar but relatively low levels of genetic diversity. We also find significant genetic differentiation between the northernmost population and the populations in southern Sweden, as well as higher levels of inbreeding in this population. Our analysis of the mitochondrial CO1 gene coupled with previously available data, shows that the remaining clouded apollo populations in Sweden correspond to two distinct mitochondrial haplogroups characteristic of different regions of Eurasia. Together with our other results, this indicates a re-colonisation of Scandinavia via two different routes after the last glacial maximum. Finally, our analyses uncover sub-population substructure in one of the remaining populations in southern Sweden. Together our results provide a first overview of the populations genetics of the clouded apollo butterfly in Sweden and explore the genetic consequences of populations size declines and fragmentation in the region. These findings were communicated to local conservation authorities and used to inform conservation strategies to protect this endangered species in Sweden.

The genetic structure of juvenile green turtles (Chelonia mydas) foraging on the east coast of central Florida is not well understood, nor has it been examined over time. In the last three decades, the dramatic increase in the number of green sea turtle nests in Florida, in association with other population parameters, has led to this species being down-listed under the Endangered Species Act from “endangered” to “threatened” in the northwest Atlantic. However, it was unclear if the exponential growth in Florida nest numbers had any influence on the genetic structure of juveniles in nearby foraging aggregations. To understand this potential impact mixed-stock analysis was conducted using mitochondrial DNA fragments that were over 800 base pairs long on samples taken from juveniles captured from 2002-2005 and 2016-2018 in the central Indian River Lagoon and Trident Submarine Basin in Port Canaveral. Results indicate the sampled foraging sites are genetically distinct habitats. In both sites, recruitment from Florida nesting beaches remained low despite increases in nesting while contributions from rookeries in Costa Rica and Mexico dominated both foraging aggregations across time. Haplotype diversity and nucleotide diversity decreased at both foraging sites over time. The foraging sites shared the two most frequently occurring haplotypes, but also had haplotypes that were unique to the site or sample period. Our results highlight the need for broader sampling of rookeries and foraging aggregations to understand the impacts of nesting increases in one rookery on juvenile diversity. Future studies should include all life stages of green turtles to enhance understanding of both the census population and effective population to better inform conservation policies necessary for a continued recovery.

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