This thesis describes a structure activity relationship (SAR) study on the recently discovered small molecule tool blebbistatin (S)-21 with particular emphasis on the development of novel synthetic protocols suitable for the rapid synthesis of libraries of blebbistatin analogues. These analogues are potentially of use as novel myosin inhibitors Chapter 1 introduces the concept of chemical biology with particular emphasis on chemical genetics. This approach has rekindled the search for new chemical tools for the investigation of biological systems. The success of blebbistatin (S)-21, which was identified in a chemical genetic study, as a research tool was also discussed. The link between several myosin classes and genetic diseases such as coeliac disease, Crohn’s disease, deafness, dermatitis, familial hypertrophic cardiomyopathy, Griscelli disease and ulcerative colitis indicate that potent inhibitors which show selectivity towards specific myosin isoforms may be of great value as tools for the study of these conditions. The plan for the SAR study around (S)-21 was outlined. Chapter 2 describes the studies undertaken to develop an efficient synthetic route to N1-alkyl analogues of (S)-21 suitable for the parallel synthesis of chemical collections. These studies culminated in the synthesis of an intermediate (S)-66 from which novel N1-alkyl analogues were synthesised. The biological evaluation of these N1-alkyl analogues was discussed. Chapter 3 describes the development of a protocol suitable for the parallel synthesis of collections of N1-aryl analogues of (S)-21 via the intermediate 66. The application of this protocol to the synthesis of a collection of racemic N1-aryl and heteroaryl analogues of (S)-21 and their biological evaluation was presented. Chapter 4 describes the successful rational design and synthesis of a novel fused thiophene ring containing inhibitor of myosin II. The structure of this compound was proposed by modelling of the existing co-crystal structure of (S)-21 bound to the metastable state of Dictyostelium discoideum myosin II (S1dC) and sought to optimise the π-π stacking interaction displayed by (S)-21 with the tyrosine 261 residue within its binding site. The biological evaluation of this novel analogue was discussed. In Chapter 5 the studies conducted to investigate the contribution of ring-C to the binding affinity of (S)-21 were described. The development of alternate routes to (S)-21, in an attempt to avoid difficulties experienced during the synthesis of some analogues of (S)-21, are described. The synthesis and biological investigation of the fluorescent dye PPBA whose binding site has been suggested to overlap with that of (S)-21 was also reported.

Die fortschreitende Entwicklung auf dem Gebiet der kontrollierten Polymerisationstechniken ermöglicht heutzutage die Synthese definierter Makromoleküle. Durch das Design der Primärstruktur dieser Makromoleküle kann ein starker Einfluss auf die sich bildende Sekundärstruktur ausgeübt werden. Um den Grad der Kontrolle über den Polymerisationsprozess zu erhöhen sollten in dieser Arbeit photoschaltbare Azobenzolfunktionalitäten in Guanidin- und Thioharnstoffmotive integriert werden, so dass durch die reversibel photoschaltbare Ausbildung von Wasserstoffbrücken die vorliegenden Polymerisationsprozesse beeinflusst werden können. In einem Ansatz wurden dazu neuartige azobenzolverknüpfte Guanidin- und Thioharnstoffkatalysatoren für die Ringöffnungspolymerisation (ROP) von Lactid (LA) synthetisiert. Im Fall der photoschaltbaren Guanidinkatalysatoren wurde eine Synthesemethode entwickelt, welche die zu Beginn langwierige Aufreinigung der Katalysatoren bedeutend vereinfacht und somit die Darstellung mehrerer Katalysatorgenerationen ermöglichte. Die erste Guanidinkatalysatorgeneration zeigte keine katalytische Aktivität. Durch die Synthese von verschiedenen Referenzguanidinen und deren Einsatz in der ROP von LA konnten die aromatischen Substituenten der Guanidinfunktionalität als Ursache der katalytischen Inaktivität identifiziert werden. Daraufhin wurde eine mit zwei Alkylsubstituenten versehene zweite Generation synthetisiert und erfolgreich in der ROP von Lactid eingesetzt. In einem anderen Ansatz wurde versucht ein azobenzolverknüpftes Guanidinium-Carboxylat-Zwitterion so zu gestalten, dass es als photoschaltbares Monomer zur Bildung supramolekularer Polymere verwendet werden kann. Hierzu wurden zwei Generationen photoschaltbarer Zwitterionen synthetisiert. Die Eigenschaften der zweiten Generation wurden mit verschiedenen spektroskopischen Methoden untersucht. Dabei wurden Hinweise auf die Bildung eines supramolekualren Polymers gefunden. / Following the progressive development in the field of controlled polymerizations, it is now possible to synthesize well defined macromolecular structures. Controlling the primary structure in these macromolecules significantly influences the secondary structure, allowing the preparation of smart materials. In order to improve the achievable degree of control, this work aims to incorporate azobenzene functionalities into guanidine and thiourea moieties and, through the photo triggered reversible formation of hydrogen bridges, influence polymerization processes. Novel azobenzene substituted guanidine and thiourea catalysts for the ring opening polymerization (ROP) of lactide were synthesized. In the case of the photoswitchable guanidine catalysts, a new synthetic protocol was developed to overcome the difficult purification of the catalysts, allowing the facile preparation of multiple catalyst generations. The first generation of photoswitchable guanidines showed catalytic activity. Synthesis of reference guanidine catalysts demonstrated a negative effect between aromatic guanidine substituents and the catalytic performance. Following this observation, a second generation of alkyl substituted guanidine catalysts was synthesized and applied successfully in the ROP of lactide. In a concurrent approach, a guanidinium carboxylate zwitterion was rendered photoswitchable by the incorporation of an azobenzene functionality and used as a monomer in supramolecular polymerization processes. The first generation of photoswitchable zwitterions showed promising photochemical properties, but its poor solubility in apolar, aprotic solvents prevented a final proof of the concept. To achieve this, a second generation of photoswitchable zwitterions was synthesized, incorporating solubilizing functionalities into the molecular design. The properties of the second generation zwitterion were examined by various spectroscopical methods, indicating the formation of supramolecular polymers.

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