Tropical habitats have high taxonomic and ecological diversity, but they are currently subject to high rates of extinction. Amphibian populations are declining globally and while we have some understanding of the causes of these declines, it is unclear how these losses will influence ecosystem structure and function. Secondary production and trophic basis of production analyses link consumers to energy flow and reflect the relative importance of various energy sources and energy flow pathways in food webs. These techniques can yield valuable information on the roles of individual consumers in ecosystem function, and thus the ecological consequences of extinction and extirpation events. I estimated the trophic basis of production in a Panamanian headwater stream to identify major sources of energy, measure energy flow through consumers, and characterize interactions among trophic levels and functional feeding groups. I examined gut contents of 19 dominant macroinvertebrate and two dominant tadpole taxa collected during dry and wet seasons before an amphibian decline. I used previously published estimates of secondary production, assimilation efficiencies, and net production efficiencies, along with gut content data, to quantify food web structure and energy flow pathways. Overall consumption of allochthonous materials was greater than autochthonous (p < 0.001), and the dominant food sources were non-algal biofilm and vascular plant detritus. Autochthonous materials were consumed at higher rates during the dry season (p = 0.012). Total consumption rates varied within and among shredders (0.85 - 12.10 g/m2/yr), scrapers (0.46 - 0.91 g/m2/yr), filterers (1.20 - 4.67 g/m2/yr), gatherers (0.43 - 2.44 g/m2/yr) and predators (0.05 - 0.95 g/m2/yr). Overall consumption rates in pool habitats were higher compared to riffles. The degree of omnivory in the food web was much higher than has been observed in similar temperate streams. Omnivory was prevalent across all functional feeding groups, but more pronounced in predators, especially Anacroneuria (55% animal and 45% plant materials in guts). There was also an ontogenetic shift among most dominant macroinvertebrates from smaller, energy rich food sources (e.g., non-algal biofilm) to larger, less nutritious materials (e.g., vascular plant material) with increase in size. My research is the first to provide quantitative estimates of energy flow through a neotropical headwater stream food web. Information from this study is central to understanding and conserving tropical headwater streams. Further, my results, along with post-amphibian decline analyses from the same stream, will allow for a comprehensive assessment of the ecological consequences of amphibian declines.

Intermittent headwater streams serve important functions in semi-arid rangelands, both for humans and wildlife. However, few studies have assessed species-environment relationships for fish and benthic macroinvertebrate assemblages in these systems. Additionally, no published studies could be found that addressed the influence of juniper coverage in watersheds on assemblage structure of these taxa. Increased juniper coverage in recent decades is believed to be associated with decreased water yields in central Texas streams. During summer 2003 and spring 2004, I examined potential effects of juniper cover on aquatic ecology. Fishes, benthic macroinvertebrates, and the physicochemical habitat were investigated in spring-fed headwater tributaries of the Pedernales River. My objectives were to: 1) describe the typical fish and benthic macroinvertebrate assemblages in headwater creeks of the Pedernales River basin; 2) compare seasonal variability of fish and benthic macroinvertebrate assemblages; 3) identify species-environment relationships in this river basin; and 4) evaluate the influence of juniper coverage in the watershed, relative tolocal and landscape-level environmental factors, on the structure of fish and benthic macroinvertebrate assemblages. A total of 4,181 individual fish were collected in summer 2003 samples, 551 fish were collected in spring 2004, 59,555 macroinvertebrates were captured in summer 2003 samples, and 51,500 macroinvertebrates were collected in spring 2004. Assemblages were typical for the area and habitat conditions. Faunal richness was lower in spring than in summer, possibly due to a combination of sampling after a relatively dry period in the spring, and lack of winter refugia in the form of deep pools. Fish assemblages may structure based principally on abiotic factors in spring, the harsher season (less available water), whereas predation pressure may influence structure in summer. Another important environmental gradient for both fish and invertebrate assemblages contrasts pool and run mesohabitats. In general, juniper cover was weakly associated with fish and invertebrate assemblages, although it tended to be associated with relatively high quality habitat for sensitive taxa (flowing runs with coarse substrate; deep, connected pools). In these intermittent streams, local-scale environmental factors probably are the dominant influences on fish and benthic macroinvertebrate assemblages. Implications for future studies are discussed.

Forestry affects most of the forest-covered land in Sweden. In the landscape, the most common stream type is headwaters, which are important sites for many processes and organisms in both the terrestrial and the aquatic ecosystems. The aim of this study was to investigate how the abundance of benthic invertebrate functional feeding groups in headwater streams develops after clear-cutting and if it also is possible to detect a change in the composition of feeding groups. The study also attempts to determine what factors have an effect on temporal changes in abundance of these groups. For the study, 11 sites in northern Sweden were sampled for benthic invertebrates using a Surber-sampler, and for each site canopy-cover and pH was obtained. Further, the age of the surrounding forest at each was visually assessed and created a 100-year gradient along which temporal changes in abundance of the functional feeding groups were investigated. The results revealed that the total abundance of organisms was the highest short after clear-cutting and afterward decreased to the lowest level in streams with the highest age of surrounding forest. Significant results for the functional feeding groups were found for predators, shredders and scrapers, which also had the highest levels of abundance early after clear-cutting and thereafter decreased. The result shows that clear-cutting, not only changes the fundamental terrestrial conditions, but also has an impact on the abundance of different benthic functional feeding group.

Intermittent headwater streams serve important functions in semi-arid rangelands, both for humans and wildlife. However, few studies have assessed species-environment relationships for fish and benthic macroinvertebrate assemblages in these systems. Additionally, no published studies could be found that addressed the influence of juniper coverage in watersheds on assemblage structure of these taxa. Increased juniper coverage in recent decades is believed to be associated with decreased water yields in central Texas streams. During summer 2003 and spring 2004, I examined potential effects of juniper cover on aquatic ecology. Fishes, benthic macroinvertebrates, and the physicochemical habitat were investigated in spring-fed headwater tributaries of the Pedernales River. My objectives were to: 1) describe the typical fish and benthic macroinvertebrate assemblages in headwater creeks of the Pedernales River basin; 2) compare seasonal variability of fish and benthic macroinvertebrate assemblages; 3) identify species-environment relationships in this river basin; and 4) evaluate the influence of juniper coverage in the watershed, relative tolocal and landscape-level environmental factors, on the structure of fish and benthic macroinvertebrate assemblages. A total of 4,181 individual fish were collected in summer 2003 samples, 551 fish were collected in spring 2004, 59,555 macroinvertebrates were captured in summer 2003 samples, and 51,500 macroinvertebrates were collected in spring 2004. Assemblages were typical for the area and habitat conditions. Faunal richness was lower in spring than in summer, possibly due to a combination of sampling after a relatively dry period in the spring, and lack of winter refugia in the form of deep pools. Fish assemblages may structure based principally on abiotic factors in spring, the harsher season (less available water), whereas predation pressure may influence structure in summer. Another important environmental gradient for both fish and invertebrate assemblages contrasts pool and run mesohabitats. In general, juniper cover was weakly associated with fish and invertebrate assemblages, although it tended to be associated with relatively high quality habitat for sensitive taxa (flowing runs with coarse substrate; deep, connected pools). In these intermittent streams, local-scale environmental factors probably are the dominant influences on fish and benthic macroinvertebrate assemblages. Implications for future studies are discussed.

No description available.

Prior studies have demonstrated Appalachian coal mining often causes elevated specific conductance (SC) in streams, and others have examined SC effects on benthic macroinvertebrate communities using point-in-time SC measurements. However, both SC and benthic macroinvertebrate communities exhibit temporal variation. Twelve Appalachian headwater streams with minimally impacted physical habitat and reference-quality physicochemical conditions (except elevated SC) were sampled ten to fourteen times each for benthic macroinvertebrates between June 2011 and November 2012. In situ loggers recorded SC at 15-minute intervals. Streams were classified by mean SC Level (Reference 17-142 S/cm, Medium 262-648 S/cm, and High 756-1,535 S/cm). Benthic macroinvertebrate community structure was quantified by the Virginia Stream Condition Index and other metrics. Structural metric differences among SC Levels and month of sampling were explored. Reference-SC streams exhibited significantly higher scores on most metrics, supporting previous findings that SC may act as a biotic stressor, even in streams lacking limitations from degradation of physical habitat or other physicochemical conditions. Temporal variation was greatest in Medium-SC streams, which had the most metrics exhibiting significant differences among months and the greatest range of monthly means for six metrics. Metrics involving % Plecoptera and/or % Trichoptera were not sensitive to elevated SC, as Leuctridae and Hydropsychidae exhibited increased abundance in streams with elevated SC. Best scores for benthic macroinvertebrate community metrics differed based on selected metric, SC Level, and month. Consequently, timing of sampling is important, particularly in streams with elevated SC because community metric scores may be impacted by dominant taxa life history patterns. / Master of Science

<p>Fish communities in agricultural headwater streams are known to be impacted by a variety of factors, including water chemistry, habitat modification, and hydrology. Little research has been conducted on how climate change influences these communities, yet the effects of climate on lake and river fish have been well documented. I hypothesized that fish community metrics would be reduced by the effects of climate change. I examined the effects of climate and hydrology metrics on fish communities at nine sites in the Saint Joseph River, Indiana and Michigan and at 18 sites in the Upper Big Walnut Creek, Ohio watersheds, from 2006 to 2019. Air temperature, water temperature, precipitation, water discharge, width, velocity, and depth metrics were calculated seasonally for each sampling year. Fish were examined seasonally with backpack electrofishing and seine netting and identified to species level. Principal component analyses were used to create axes which represented gradients of climate and hydrology metrics. Linear mixed effect and logistic regression modeling suggested that hydrology is a stronger predictor than climate, but that both influence fish communities. Percent Percidae, percent herbivore, and percent open substrate spawner were positively correlated with precipitation and water temperature. Presence herbivore was negatively correlated with precipitation and positively correlated with water temperature. My data only somewhat supported the hypothesis that climate would reduce fish community metrics. Gradients of hydrology were observed to be stronger predictors than gradients of climate. However, one must acknowledge relationships between climate and hydrology and the potential for climate to have indirect effects on fish communities through influences on hydrology. This study increases understanding of how fish communities in agriculturally dominated headwater streams are influenced, and emphasizes the need for further research on how these fishes will be impacted by a changing climate. </p>

Large-scale land uses such as residential wastewater discharge and coal mining practices, particularly surface coal extraction and associated valley fills, are of particular ecological concern in central Appalachia. Identification and quantification of both large-scale land use and microhabitat alterations to ecosystems are a necessary first-step aid in mitigation of negative consequences to biota. In central Appalachian headwater streams absent of fish, salamanders are the dominant, most abundant vertebrate predator providing a significant intermediate trophic role. Stream salamander species are considered to be sensitive to aquatic stressors and environmental alterations with past research having shown linkages among microhabitat parameters, and large-scale land use such as urbanization and logging to salamander abundances. However, there is little information examining these linkages in the coalfields of central Appalachia. In the summer of 2013, I visited 70 sites (sampled three times each) in the southwest Virginia coalfields to collect salamanders and quantify stream and riparian microhabitat parameters. In an information-theoretic framework I compared the effects of microhabitat and large-scale land use on salamander occupancy and abundances. My findings indicate that dusky salamander (Desmognathus spp.) occupancy and abundances are more correlated to microhabitat parameters such as canopy cover than to subwatershed land uses. Brook salamander (Eurycea spp.) occupancy show negative associations to large-scale land uses such as percent recent mining and percent forested. Whereas Eurycea spp. abundances are negatively influenced by suspended sediments, stream bank erosion and stream substrate embeddedness. Management implications of these findings include erosion prevention and control as well as protection and management of riparian habitats. However, quantifying physical environmental quality such as stream and riparian habitat often can be quite difficult, particularly when there are time or fiscal limitations. In order to accurately assess stream and riparian habitat in a time- and cost- effective manner, the U.S. Army Corps of Engineers (USACE) developed a functional condition index (FCI) assessment for streams that measures 11 stream and riparian parameters along with watershed land use to calculate three different scores: a hydrology score, biogeochemical score, and habitat score (Noble et al 2010). Using the salamander data from 2013, I then analyzed the FCI scores using collected occupancy and abundance analyses. Both analyses supported the Habitat FCI score as it had strong correlations with both occupancy and abundance of three Desmognathus spp., and support the use of the USACE protocol for stream and riparian habitat assessment. / Ph. D.

No description available.

No description available.