Eleven sediment samples from different geological layers and four fossils from the South of Sweden were collected and estimated to be 80 million years old (approximately late of Cretaceous period). The samples were analyzed for polychlorinated dibenzo-p dioxins (PCDD/Fs) to investigate whether these samples are likely to contain dioxins from a natural formation. For over thirty years, the scientific community has discussed the possibility of a natural formation of dioxins. Several hypothesis have been put forward, but often rejected by the evidence of a source of anthropogenic pollution in the samples. In order to answer this issue, two types of analyses have been performed : high resolution gas chromatography-high resolution mass spectrometry (HRGC/HRMS) and elemental analyzer-isotopic ratio mass spectrometry (EA-IRMS). HRGC/HRMS provides information about the source of dioxins comparing the distribution of all PCDD/Fs to experimental isotopic patterns from past publications. δ13C of organic carbon gives information about the nature of carbon present in soils and can be helpful to trace paleoclimates.

No description available.

Introduction: In Positron Emission Tomography (PET), the use of resolution modelling (RM) in iterative image reconstruction enables the modelling of aspects of detection which result in mispositioning of measured data and the subsequent blurring of reconstructed images. RM reconstruction can result in significant improvements in spatial resolution, voxel variance and count rate bias and could be a software alternative to detection hardware that is able to achieve higher resolution. Such hardware typically consists of small scintillation crystals, small bore diameters and depth of interaction discrimination, such as for the High Resolution Research Tomograph (HRRT, Siemens), which used a double crystal layer phoswich detector system. However, RM implementation comes with penalties such as slower rates of convergence, potentially higher region of interest variance and Gibbs artefacts. Methods: Assessment of the benefits and drawbacks of RM was done in the first part of this thesis together with the measurement and modelling of spatially varying resolution kernels for different scanner configurations and PET isotopes for the HRRT. It is also unclear as to whether high resolution scanning offers significant advantages over clinical PET-CT scanners for applications in the head. Through direct comparison to our HRRT, we explore whether there are significant advantages of high resolution scanning for an application in the head over clinical PET-CT. For this comparison our Biograph TruePoint TrueV (Siemens) optimised for whole body imaging was used and a novel clinical study using both scanners was set where we scanned Neurofibromatosis 2 (NF2) patients with vestibular schwannomas (VS) using [18F]fluorodeoxyglucose (FDG) and [18F]fluorothymidine (FLT). The clinical objective was to assess if uptake within VS of FLT and FDG could be measured and whether this uptake was predictive of tumour growth. Finally an assessment of the feasibility and impact of reducing the original injected activities in our clinical study was performed using bootstrapping resampling. Conclusions: RM provides greater but additive improvements in image resolution compared to DOI on the HRRT. Isotope specific image based RM could be estimated from published positron range distributions and measurements using fluorine-18. With the clinical project, uptake of FDG and FLT within the VS lesions was observed, these uptake values were correlated to each other, and high uptake was predictive of tumour growth with little differences in predictive power between FLT and FDG. Although there were benefits of the HRRT for imaging small lesions, in our clinical application there was little difference between the two scanners to discriminate lesion growth. Using the PET-CT scanner data and knowledge of lesion location, doses could be reduced to 5-10% without any significant loss of ability to discriminate lesion growth.

O gênero Yersinia pertence à família Enterobacteriaceae e compreende 17 espécies. Y. pestis, Y. pseudotuberculosis e Y. enterocolitica são reconhecidamente patógenos de humanos e animais. Y. pestis cause a peste. Y. pseudotuberculosis e Y. enterocolitica são agentes causadores, sobretudo, de gastroenterites transmitidas por água e alimentos. As demais 14 espécies são, usualmente, consideradas não-patogênicas, com exceção de Y. ruckeri sorogrupo O:1 que causa infecções em peixes. Nas últimas décadas, a tipagem molecular tornou-se uma importante ferramenta nos estudos filogenéticos de numerosos micro-organismos e o desenvolvimento de sistemas de tipagem rápidos e baratos pode facilitar os estudos epidemiológicos de infecções bacterianas. No presente estudo objetivou-se desenvolver um método de genotipagem de Yersinia spp. baseado em high-resolution melting analysis (HRMA) para diferenciar os single-nucleotide polymorphisms (SNPs) presentes nas sequências dos genes 16S rRNA, glnA, gyrB, hsp60 e recA e aplicá-lo na tipagem de 40 linhagens de Y. pseudotuberculosis e 50 linhagens de Y. enterocolitica, bem como separar por HRMA as espécies Y. pseudotuberculosis e Y. enterocolitica. Os SNPs foram determinados nas sequências dos loci acima citados a partir de um conjunto de 119 linhagens de Yersinia spp. depositadas no GenBank/EMBL/DDBJ. Foram encontrados nas sequências dos genes analisados de Y. pseudotuberculosis, Y. enterocolitica, Y. bercovieri, Y. rohdei, Y. intermedia, Y. mollaretii e Y. ruckeri 10, 10, 9, 6, 4, 1 e 1 SNPs, respectivamente. Nenhum SNP foi encontrado nas sequências analisadas de Y. pestis e um grande número de SNPs foi encontrado nas sequências analisadas de Y. frederiksenii, Y. kristensenii e Y. massiliensis, o que impossibilitou a genotipagem dessas espécies por HRMA. As demais espécies não foram analisadas. Foram desenhados pares de primers para flanquear os SNPs encontrados em cada espécie de Yersinia testada. Usando um conjunto de primers espécie-específicos, a diversidade genética de cada espécie de Yersinia foi determinada por HRMA e a análise filogenética foi baseada na sequência concatenada composta pelos nucleotídeos identificados em cada fragmento analisado. O agrupamento foi realizado com o software BioNumerics usando o método UPGMA com 1.000 replicatas de bootstrap. A árvore filogenética ii construída para Y. pseudotuberculosis agrupou as linhagens em clusters bio-sorogrupo específicos. As linhagens do bio-sorogrupo 1/O:1 foram agrupadas em um cluster e as linhagens do bio-sorogrupo 2/O:3 em outro. A árvore filogenética construída para Y. enterocolitica agrupou as linhagens em três grupos. As linhagens altamente patogênicas, do biotipo 1B, foram agrupadas em um cluster, as linhagens de média patogenicidade, dos biotipos 2, 3, 4 e 5, foram agrupadas em um segundo cluster e as linhagens consideradas nãopatogênicas, do biotipo 1A, foram agrupadas em um terceiro cluster. O agrupamento encontrado em Y. pseudotuberculosis e Y. enterocolitica foi consistente com o perfil patogênico característico dessas duas espécies. Nenhuma correlação epidemiológica significativa foi encontrada no agrupamento de Y. bercovieri, Y. rohdei, Y. intermedia, Y. mollaretii e Y. ruckeri de acordo com os resultados de HRMA. Ademais, o método de HRMA aqui desenvolvido foi capaz de separar as espécies Y. pseudotuberculosis e Y. enterocolitica. O método de HRMA desenvolvido nesse estudo pode ser usado como uma alternativa para a genotipagem e para a diferenciação de Y. pseudotuberculosis de Y. enterocolitica. Esse método também pode complementar os métodos baseados em sequências e facilitar os estudos epidemiológicos dessas duas espécies de Yersinia. / The genus Yersinia belongs to the family Enterobacteriaceae and comprises 17 species. Y. pestis, Y. pseudotuberculosis and Y. enterocolitica are well recognized human and animal pathogens. Y. pestis causes plague. Y. pseudotuberculosis and Y. enterocolitica are, usually, causative agents of food-waterborne gastroenteritis. The other 14 Yersinia species are considered to be non-pathogenic, with the exception of Y. ruckeri serogroup O:1 which causes infections in fishes. In the last few decades, molecular typing has become an important tool in phylogenetic studies of several microorganisms and the development of fast and inexpensive typing systems can facilitate epidemiological studies of bacterial infections. The present study aimed to develop a method of Yersinia spp. genotyping based on high-resolution melting analysis (HRMA) in order to differentiate the single-nucleotide polymorphisms (SNPs) present in the 16S rRNA, glnA, gyrB, hsp60 and recA sequences and apply it in the typing of 40 Y. pseudotuberculosis strains and 50 Y. enterocolitica strains, as well as, to separate by HRMA the Y. pseudotuberculosis and Y. enterocolitica species. The SNPs were determined in the sequences of the aforementioned loci using a set of 119 Yersinia strains deposited in the GenBank/EMBL/DDBJ database. It were found in the gene sequences analyzed of Y. pseudotuberculosis, Y. enterocolitica, Y. bercovieri, Y. rohdei, Y. intermedia, Y. mollaretii and Y. ruckeri 10, 10, 9, 6, 4, 1 and 1 SNPs, respectively. No SNPs was found in the analyzed sequences of Y. pestis and a large number of SNPs were found in the analyzed sequences of Y. frederiksenii, Y. kristensenii and Y. massiliensis what prevented their genotyping by HRMA. The remaining Yersinia species were not analyzed. It was designed primer pairs to flank the SNPs found in each Yersinia species tested. Using a specie-specific set of primers, the genetic diversity of each Yersinia species used was determined by HRMA and the phylogenetic analysis was based on the concatenated sequence composed by the nucleotides identified in each fragment analyzed. Clustering was performed with the software package BioNumerics using UPGMA method and 1,000 bootstrap replicates. The phylogenetic tree constructed for Y. pseudotuberculosis grouped the strains into bio-serogroups specific clusters. The strains of 1/O:1 bio-serogroup were grouped into one cluster and the strains of 2/O:3 bio-serogroup into iv other cluster. The phylogenetic tree constructed for Y. enterocolitica grouped the strains in three clusters. The highly pathogenic strains, of biotype 1B, were grouped into one cluster, the moderate pathogenic strains, of biotypes 2, 3, 4 and 5, were grouped into a second cluster and, the non-pathogenic strains, of biotype 1A, were grouped into a third cluster. The clusterization of Y. pseudotuberculosis and Y. enterocolitica were consistent with the pathogenic profile characteristic of these two Yersinia species. No significant epidemiological correlation was found in the grouping of Y. bercovieri, Y. rohdei, Y. intermedia Y. mollaretii and Y. ruckeri according to HRMA results. Moreover, the HRMA-based method develop here was able to separate the Y. pseudotuberculosis and Y. enterocolitica species. The HRMA assay developed in this study can be used as an alternative for the genotyping and the differentiation of Y. pseudotuberculosis and Y. enterocolitica. This method can also complement sequence-based methods and facilitate epidemiological studies of these two Yersinia species.

Call number: LD2668 .T4 1985 S54 / Master of Science

Reflection seismic and seismic tomography methods can be used to image the upper kilometer of hard bedrock and the loose unconsolidated sediments covering it. Developments of these two methods and their application, as well as identifying issues concerning their usage, are the main focus of the thesis. Data used for this development were acquired at three different sites in Sweden, in Forsmark 140 km north of Stockholm, in the Oskarshamn area in southern Sweden, and in the northern part of the Siljan Ring impact crater area. The reflection seismic data were acquired with long source-receiver offsets relative to some of the targeted depths to be imaged. In the initial processing standard steps were applied, but the uppermost part of the sections were not always clear. The longer offsets imply that pre-stack migration is necessary in order to image the uppermost bedrock as clearly as possible. Careful choice of filters and velocity functions improve the pre-stack migrated image, allowing better correlation with near-surface geological information. The seismic tomography method has been enhanced to calculate, simultaneously with the velocity inversion, optimal corrections to the picked first break travel times in order to compensate for the delays due to the seismic waves passing through the loose sediments covering the bedrock. The reflection seismic processing used in this thesis has produced high-quality images of the upper kilometers, and in one example from the Forsmark site, the image of the uppermost 250 meters of the bedrock has been improved. The three-dimensional orientation of reflections has been determined at the Oskarshamn site. Correlation with borehole data shows that many of these reflections originate from fracture zones. The developed seismic tomography method produces high-detail velocity models for the site in the Siljan impact area and for the Forsmark site. In Forsmark, detailed estimates of the bedrock topography were calculated with the use of the developed tomography method.

This thesis provides a multi-pronged approach towards paving the way for future space and ground based exoplanet characterisation e↵orts as well as providing new analysis of the atmosphere of the exoplanet HD 179949 b. This is done, firstly, by outlining engineering trade studies conducted for the attitude and orbit control system (AOCS) and sun shield for the Exoplanet Characterisation Observatory (EChO) spacecraft (a proposed European Space Agency exoplanet space mission). These trade studies were conducted in collaboration with EADS Astrium. A cold gas system with the possibility of a hybrid system which would include the use of reaction wheels is recommend for the design of the AOCS. For the sun shield, a V-groove cone shield is concluded to provide the best thermal coverage while also providing stay light protection as well as being more mechanically symmetric than other options. Simulations are then conducted to determine the number of transiting planets future surveys should expect to find around stars within 50 parsecs of the sun. This is done by taking the known stars within 50 parsecs and adding a simulated planet population based on current models and observations to each star. Assumptions are made regarding observability of a planetary transit and a Monte Carlo simulation run to gain statistics on the number and type of planetary systems that can be expected to be found. The results of the simulation show a mean expected number of 27 detectable transiting planets within 50 parsecs. Next, using the Position and Proper Motion Extended-L (PPMXL) catalogue, optical and near-infrared colour cuts were used together with a reduced proper motion cut to find bright M dwarfs for future exoplanet transit studies. PPMXL’s low proper motion uncertainties allow this work to probe down to smaller proper motions than previous similar studies. Unique objects found with this method were combined with that of previous work to produce 8479 K < 9 M dwarfs. Low-resolution spectroscopy was obtained of a sample of the objects found using this selection method to gain statistics on their spectral type and physical properties. Results show a spectral-type range of K7-M4V. This catalogue is the most complete collection of K < 9 M dwarfs currently available and is made available here. High resolution spectroscopy and model spectra of planetary atmospheres is then used along with a spectral deconvolution technique to attempt to detect the Doppler shifted signal of the non-transiting planet HD 179949 b. The signal was not detected but new upper limits were set ruling out the presence of TiO down to a log10 ✏0 = -4.09 with 99.9 per cent confidence. Simulations conducted by this work imply a loss of sensitivity occurring possibly due to varying telluric interference or instrumental systematics.

For most electromagnetic (EM) geophysical systems, the contamination of primary fields on secondary fields ultimately limits the capability of the controlled-source EM methods. Null coupling techniques were proposed to solve this problem. However, the small orientation errors in the null coupling systems greatly restrict the applications of these systems. Another problem encountered by most EM systems is the surface interference and geologic noise, which sometimes make the geophysical survey impossible to carry out. In order to solve these problems, the alternating target antenna coupling (ATAC) method was introduced, which greatly removed the influence of the primary field and reduced the surface interference. But this system has limitations on the maximum transmitter moment that can be used. The differential target antenna coupling (DTAC) method was proposed to allow much larger transmitter moments and at the same time maintain the advantages of the ATAC method. In this dissertation, first, the theoretical DTAC calculations were derived mathematically using Born and Wolf's complex magnetic vector. 1D layered and 2D blocked earth models were used to demonstrate that the DTAC method has no responses for 1D and 2D structures. Analytical studies of the plate model influenced by conductive and resistive backgrounds were presented to explain the physical phenomenology behind the DTAC method, which is the magnetic fields of the subsurface targets are required to be frequency dependent. Then, the advantages of the DTAC method, e.g., high-resolution, reducing the geologic noise and insensitive to surface interference, were analyzed using surface and subsurface numerical examples in the EMGIMA software. Next, the theoretical advantages, such as high resolution and insensitive to surface interference, were verified by designing and developing a low-power (moment of 50 Am²) vertical-array DTAC system and testing it on controlled targets and scaled target coils. At last, a high-power (moment of about 6800 Am²) vertical-array DTAC system was designed, developed and tested on controlled buried targets and surface interference to illustrate that the DTAC system was insensitive to surface interference even with a high-power transmitter and having higher resolution by using the large-moment transmitter. From the theoretical and practical analysis and tests, several characteristics of the DTAC method were found: (1) The DTAC method can null out the effect of 1D layered and 2D structures, because magnetic fields are orientation independent which lead to no difference among the null vector directions. This characteristic allows for the measurements of smaller subsurface targets; (2) The DTAC method is insensitive to the orientation errors. It is a robust EM null coupling method. Even large orientation errors do not affect the measured target responses, when a reference frequency and one or more data frequencies are used; (3) The vertical-array DTAC method is effective in reducing the geologic noise and insensitive to the surface interference, e.g., fences, vehicles, power line and buildings; (4) The DTAC method is a high-resolution EM sounding method. It can distinguish the depth and orientation of subsurface targets; (5) The vertical-array DTAC method can be adapted to a variety of rapidly moving survey applications. The transmitter moment can be scaled for effective study of near-surface targets (civil engineering, water resource, and environmental restoration) as well as deep targets (mining and other natural-resource exploration).

Les modèles de prévision opérationnelle du temps résolvent numériquement les équations de la mécanique des fluides en calculant l'évolution de champs (pression, température, humidité, vitesses) définis comme moyennes horizontales à l'échelle des mailles d'une grille (et à différents niveaux verticaux). Les processus d'échelle inférieure à la maille jouent néanmoins un rôle essentiel dans les transferts et les bilans de chaleur, humidité et quantité de mouvement. Les paramétrisations physiques visent à évaluer les termes de source correspondant à ces phénomènes, et apparaissant dans les équations des champs moyens aux points de grille. Lorsque l'on diminue la taille des mailles afin de représenter plus finement l'évolution des phénomènes atmosphériques, certaines hypothèses utilisées dans ces paramétrisations perdent leur validité. Le problème se pose surtout quand la taille des mailles passe en dessous d'une dizaine de kilomètres, se rapprochant de la taille des grands systèmes de nuages convectifs (systèmes orageux, lignes de grain). Ce travail s'inscrit dans le cadre des développements du modèle à mailles fines ARPÈGE ALADIN, utilisé par une douzaine de pays pour l'élaboration de prévisions à courte échéance (jusque 48 heures). Nous décrivons d'abord l'ensemble des paramétrisations physiques du modèle. Suit une analyse détaillée de la paramétrisation actuelle de la convection profonde. Nous présentons également notre contribution personnelle à celle ci, concernant l'entraînement de la quantité de mouvement horizontale dans le nuage convectif. Nous faisons ressortir les principaux points faibles ou hypothèses nécessitant des mailles de grandes dimensions, et dégageons les voies pour de nouveaux développements. Nous approfondissons ensuite deux des aspects sortis de cette discussion: l'usage de variables pronostiques de l'activité convective, et la prise en compte de différences entre l'environnement immédiat du nuage et les valeurs des champs à grande échelle. Ceci nous conduit à la réalisation et la mise en œuvre d'un schéma pronostique de la convection profonde. A ce schéma devraient encore s'ajouter une paramétrisation pronostique des phases condensées suspendues (actuellement en cours de développement par d'autres personnes) et quelques autres améliorations que nous proposons. Des tests de validation et de comportement du schéma pronostique ont été effectués en modèle à aire limitée à différentes résolutions et en modèle global. Dans ce dernier cas l'effet du nouveau schéma sur les bilans globaux est également examiné. Ces expériences apportent un éclairage supplémentaire sur le comportement du schéma convectif et les problèmes de partage entre la schéma de convection profonde et le schéma de précipitation de grande échelle. La présente étude fait donc le point sur le statut actuel des différentes paramétrisations du modèle, et propose des solutions pratiques pour améliorer la qualité de la représentation des phénomènes convectifs. L'utilisation de mailles plus petites que 5 km nécessite enfin de lever l'hypothèse hydrostatique dans les équations de grande échelle, et nous esquissons les raffinements supplémentaires de la paramétrisation possibles dans ce cas.

Semiconductor nanostructures have attracted great interest owing to their unique physical properties and potential applications in nanoscale functional devices. The enhancement of the physical properties of semiconductor nanostructures and their performance in devices requires a deeper understanding of their fundamental microstructural properties. Thus this thesis is focused on the experimental and theoretical studies of the microstructural properties of two important semiconductor nanostructures: axial heterostructured silicon nanowires with varying doping and indium nitride colloidal nanoparticles. In this thesis, axial heterostructured silicon nanowires with varying doping were synthesized on an oxide-removed Si{111} substrate using a vapour-liquid-solid approach. Their fundamental microstructural properties, including the crystalline structure, wire growth direction and morphologies, were studied using various characterization techniques. It is found that a very small fraction of the silicon nanowires crystallize in a hexagonal (wurtzite) phase, which is thermodynamically unstable in bulk silicon under ambient conditions, while a large majority of the synthesized silicon nanowires exhibit the expected diamond cubic crystalline structure. About 75% of the diamond cubic silicon nanowires synthesized grow in a single <111> direction, while the rest contain growth-related kinks, where the nanowire switches to another direction during the growth. The ~109° silicon nanowire kinks are the most commonly observed, and the growth direction before and after such ~109° kink are both <111>. The sidewalls of silicon nanowires do not change abruptly at the ~109° kink, but exhibit an elbow-shaped structure. It is also found that the nanowire sidewalls exhibit periodic nanofaceting, which is strongly doping-dependent. The nanofaceting is found to occur during the enhanced sidewall growth that arises when the diborane dopant gas is introduced. A thermodynamic model predicting the dependence of nanofacet period on the wire diameter is developed. Another semiconductor nanostructure studied in this thesis is indium nitride colloidal nanoparticles, which were grown using a solution-phase chemical method. The formation of such indium nitride colloidal nanoparticles is confirmed by studying their compositions, crystalline structures and shape using various electron microscopy techniques. The size of the indium nitride colloidal nanoparticles was controlled by varying the time of solution-phase reactions. The most probable size of the colloidal nanoparticles increases and the size distribution broadens with the increase of reaction time. The crystalline structures of the indium nitride colloidal nanoparticles are found to be particle size dependent. The observed dependence of the band gap blueshift of the indium nitride colloidal nanoparticles on the reaction time (hence the particle size) is explained by the quantum-size effect.