The purpose of this study was to report the scintigraphic and sonographic appearance of the thyroid gland in clinically normal horses so these modalities could be used to assess the thyroid gland in this species. Horses were divided into two age groups. Group A consisted of 8 horses between 3 and 10 years of age and Group B of 7 horses between 11 and 20 years of age. Total T4 concentrations were within the laboratory reference interval. Thyroid to salivary (T/S) ratio, percent dose uptake of pertechnetate and thyroid lobe volume were calculated. Echogenicity of thyroid lobes and presence of nodules were documented. The two groups were compared using appropriate parametric and nonparametic tests. Total T4 concentrations were significantly lower in the older group. Sixty minute mean ± standard deviation (SD) T/S ratios for older versus younger horses were 5.8 ± 3.0 and 5.3 ± 2.2, respectively. Sixty minute median and interquartile ranges for percent dose uptake of pertechnetate for older versus younger horses were 3.64% (1.5 to 3.98%) and 2.55% (2.33 to 2.90%), respectively. Mean ± SD thyroid lobe volumes for older versus younger horses were 18.93 ± 5.16 cm3 and 13.55 ± 3.56 cm3, respectively. Most thyroid lobes were hyper or isoechoic to the sternocephalicus muscle. Prevalence of thyroid nodules did not differ between groups. Older horses had trends for greater T/S ratios, percent dose uptakes and thyroid lobe volumes but had lower total T4 concentrations. Further studies using scintigraphy and ultrasound in horses with thyroid disease are planned. / Master of Science

A study was performed to identify apoptotic cells in the equine intestine and to determine if the occurrence of apoptosis is affected by gastrointestinal disease and tissue layer of intestine. Samples of intestine were collected from 38 horses that underwent surgery or were humanely destroyed for small or large bowel obstruction, strangulation or distension. Samples were also taken from 9 horses which were humanely euthanized for reasons other than gastrointestinal disease or systemic disease. Specimens were collected at surgery from intestine involved in the primary lesion, distant to the primary lesion, or at necropsy from several sites including the primary lesion. Tissues were fixed, serially sectioned and stained with hematoxylin and eosin (H&E) and for apoptosis by the terminal deoxynucleotidyl transferase mediated dUTP nick end labeling (TUNEL) technique. The number of apoptotic cells per high power field were counted in the mucosa, circular muscle, longitudinal muscle and serosa for each sample of intestine. Apoptotic staining nuclei were seen in all layers of intestine. An increased number of apoptotic cells were found in the circular muscle of the intestine from horses with simple obstruction. Intestine distant from the primary strangulating lesion had higher numbers of apoptotic cells than intestine distant from a simple obstruction lesion or intestine taken at the site of a strangulating or simple obstructive lesion. Intestine from horses with obstructing or strangulating lesions in the small intestine and large colon has increased numbers of apoptotic cells. Further investigation is required to determine whether increased apoptosis affects intestinal function. / Master of Science

The use of digital technology is becoming increasingly popular in equine research. Current applied technologies for livestock are being used to detect pathogens, observe locomotion patterns, determine estrus periods, and measure vital parameters. These sensors leverage global positioning systems, accelerometers, magnetometers, goniometers, optics, among other emerging sensing technologies. The success of these devices has led to the introduction of various equine wearable sensors into market. These technologies seek to promote mobile devices to be used in equine training, monitoring, and clinical contexts. Therefore, the objective of this research is to characterize advancements, opportunities, and gaps in our existing knowledge of equine wearable sensor technology. Specifically, this research explores two innovative sensors designed for equines and their potential to enhance animal safety and health. The purpose of the research on these sensors is to (1) better contextualize biomechanical data in practically applicable terms and (2) evaluate the accuracy of a photoplethysmography based pulse sensor to detect heart rates of adult horses. In addition, currently marketed equine wearable sensors are reviewed, and their limitations are evaluated. Areas of future research and developments of equine wearable technologies are also explored. / Master of Science / The use of digital technology is becoming increasingly popular in equine research. Several biosensors exist for livestock species which have been successful in helping manage health and wellbeing of these animals. Although commercial development of equine wearable sensors has begun, the success of initial industry prototypes is limited. Commercially available equine wearable sensors currently marketed often seek to provide support in equine training, monitoring, and clinical contexts. Despite several commercially available equine wearable sensors, there has been slow adoption of this type of technology in the industry. Therefore, the objective of this research is to characterize advancements, opportunities, and gaps in our existing knowledge of equine wearable sensor technology. Specifically, it explores two innovative sensors designed for equines and their potential to improve the safety and health these animals. The purpose of these sensors are to (1) better understand factors that influence the safety of equestrian sports with jumping phases and (2) evaluate the accuracy of a sensor to detect heart rates of adult horses. In addition, current marketed equine wearable sensors are reviewed, and their limitations are evaluated. Areas of future research and developments of equine wearable technologies are also explored.

The surface presentations of CD18 and β-integrin-like neutrophil antigens were evaluated in six clinically normal horses twice at seven to 30 day intervals. The monoclonal antibodies (MAb) 60.3 and #38 recognize portions of CD18, the β₂-subunit of heterodimeric integrins LFA-1 (i.e. CD11a/CD18), Mac-1 (i.e. CD11b/CD18) and p150,95 (i.e. CD11c/CD18). Monoclonal antibody #25 putatively recognizes a β-integrin-like surface antigen. Neutrophils were isolated from whole blood and incubated with either Hanks’ balanced salt solution or lipopolysaccharide (LPS, No. L7261 from Salmonella typhimurium) and then with one of three primary MAbs (60.3, #38 or #25). Cells were then incubated with the secondary MAb [fluorescein isothiocyanate (FITC)-conjugated affinipure F(ab')₂ fragment-goat antimouse (GAM) IgG], which acted as a label for fluorescence activated cell sorting. Cell viability measurements were performed pre- and post-incubation; and cell type was confirmed. Results indicate that unstimulated equine neutrophils expressed CD18 cell surface adhesion molecules almost constitutively (p < 0.05) using MAbs 60.3 and #38. Unstimulated cells incubated with MAb #25 had a labeling percentage of 87.67%, indicating that most equine neutrophils express a β-integrin-like antigen on their surface. The labeling percentages, and mean and peak channel numbers (i.e. indicators of fluorescence intensity) were significantly greater (p < 0.05) in neutrophils incubated with MAbs 60.3, #38, and #25 in comparison to control cells (i.e. not incubated with primary MAb). Some autofluorescence was evident in control neutrophils; however, non-selective fluorescence was minimized by use of a secondary MAb composed of F(ab')₂. Monoclonal antibody 60.3 labeled significantly more (p < 0.05) neutrophils than MAb #38 and had greater fluorescence intensity. Conversely, LPS-stimulated cells incubated with MAbs 60.3 and #38 showed significant decreases (p < 0.05) in the percentage of CD18 moieties labeled compared to unstimulated cells. However, there was no significant alteration in percentage labeling with MAb # 25. Mean and peak channel numbers tended to increase after LPS-stimulation in cells incubated with MAbs 60.3 and # 38; however, no significant differences could be ascribed. This data showed that whilst fewer neutrophils were labeled for CD18 after LPS-stimulation, the neutrophils had a higher density of labeling indicative of quantitative up-regulation. Qualitative up-regulation may also have occurred as the number of cells labeled decreased. Viability pre- and post- incubation ranged from 94 to 100% and was not different, indicating that MAb incubation did not adversely effect equine neutrophils. It was -concluded that unstimulated neutrophils from horses almost constitutively express important integrin cell surface antigens, which are crucial to adhesion, interactive communication, and the immune response. Lipopolysaccharide stimulation of neutrophils causes quantitative up-regulation, and may facilitate qualitative alterations in CD18 moieties. Also MAb 60.3 appears superior to MAb #38 in its ability to label CD18 subunit of equine neutrophils. These MAb modalities could be used to manipulate certain diseases, exacerbated by excessive neutrophil numbers and degranulation (eg. ischemia/reperfusion and respiratory distress syndromes). / Master of Science

Foal scores from the International Sporthorse Registry and Oldenburg Registry North America were used for statistical and genetic analysis. Scored traits include type and conformation (TC), athletic ability of movement (AM), overall development as related to age (OD), and total score (TS) calculated as a weighted average of TC, AM, and OD. Premium status (PS) was analyzed as a binary trait. Preliminary statistical analysis determined significant fixed effects of sex, year of birth, dam breed, and inspection period. Offspring of stallions with only one offspring in the dataset and non-warmblood sires were deleted. Non-warmblood or non-Thoroughbred dams were also removed. Variance components were estimated using ASReml methodology to obtain genetic parameters. Traits were moderately to highly heritable with heritabilities of 0.45, 0.47, 0.49, and 0.55 for TC, AM, OD, and TS, respectively. PS had a heritability of 0.32 on a binary scale and 0.51 when transformed to the normal scale. Genetic correlations between TC, AM, OD, and TS were all high and favorable, ranging from 0.80 to 0.99. Genetic correlations with PS were inestimable. Foal inspection scores are heritable and should respond to selection. Selection for improvement in one trait should result in improvement in all traits. If genetic parameters can be correlated to data obtained in older horses, incorporating foal scores in selection decisions could improve warmblood breeding programs. Utilizing foal inspection scores should be beneficial to breeding objectives of the International Sporthorse Registry and Oldenburg Registry North America. / Master of Science

Apoptosis is a form of "planned cell death" and is an essential component of normal tissue differentiation and functional regulation. Neutrophil apoptosis facilitates down regulation of the inflammatory response while minimizing "by stander" injury to normal tissue, and disruption of this process by various diseases may have a significant negative impact on patient recovery. Consequently, neutrophil apoptosis has been the focus of research in many species. However, methods for measuring apoptosis have not been evaluated in the horse. The goal of this study was to adapt previously reported methods for inducing and measuring both neutrophil apoptosis and necrosis in non-equine species for use in equine peripheral blood neutrophils. To achieve this goal the experiment was divided into three parts: 1. Induce apoptosis and necrosis in equine peripheral blood neutrophils using previously used known inducers and examine the relationship between exposure time and percentage of affected cells; 2. Measure percentage of apoptosis and necrosis using three methods of detection: a) Annexin-V Fitc PI assay, b) Homogenous caspase 3/7 assay and c) Light microscopy and; 3. Compare the results between the three methods of apoptosis detection to determine if results are comparable The hypothesis was that previously reported methods for inducing and measuring both neutrophil apoptosis and necrosis in non-equine species can be adapted for use in equine peripheral blood neutrophils. Venous blood samples were collected aseptically from the jugular vein of eight horses. Isolation of neutrophils was performed using density gradient centrifugation on percoll. In part 1 of the experiment aliquots of the neutrophil suspension were cultured in the presence of four known inducers of apoptosis; actinomycin D, staurosporin, cycloheximide and sodium hypochlorite, at four different concentrations (table 2). A fifth population was to induce necrosis using a freeze-thaw cycle and bleach. A control sample was examined (no inducer) to determine spontaneous rate of apoptosis. The aliquots were cultured and the percentage of apoptosis determined at two sequential time points for each horse. Apoptosis was measured at either 30 minutes and 3 hours or 6 and 12 hours by three simultaneous methods: (1) annexin-V FITC PI assay (AVF), (2) homogenous caspase assay (HC) and (3) light microscopy (MS). The AVF and HC methods detect events associated with early apoptosis whilst MS detects nuclear changes which are late events of apoptosis. Using AVF and MS apoptotic cells are able to be differentiated from necrotic cells. In part two of the experiment the agreement and reproducibility between AVF and MS was further examined. In this part of the experiment neutrophils were isolated from the peripheral blood of 10 normal healthy adult horses. Each isolated sample was cultured with 80µM Actinomycin D for 12 hours and a control sample (no inducer) also prepared. Three triplicate samples were next set up from both the induced and control sample and apoptosis was determined using both AVF and MS. In part 3 of the experiment, data was analyzed using the mixed model ANOVA following log transformation of the data. Main effects of treatment, concentration and time were analyzed. Statistical significance was considered if P was < 0.05. The relationship between the three techniques; light microscopy, flow cytometry and the fluorescent plate reader, was investigated using Spearman rank correlation coefficients (Fisher's Z transformation). The Bland-Altman approach for method analysis was used to further characterize the correlation between results obtained via light microscopy and flow cytometry. Statistical significance was considered if P < 0.05. All inducers increased the percentage of apoptotic cells at either one or more time point and results were most comparable between AVF and MS. Increasing exposure time increased percentage of apoptotic neutrophils for all inducers using AVF and MS (p<0.0001). For both AVF and MS, cycloheximide and staurosporin induced apoptosis significantly above control levels at 3, 6 and 12 hours; actinomycin D at 6 and 12 hours and bleach at 3 and 6 hours as well was 12 hours for AVF only. With HC induction of apoptosis was detected earlier with bleach at 30 minutes and 3 hours and staurosporin at 30 minutes, 3 and 6 hours. Apoptosis was detected only at 6 hours for cycloheximide. Increasing concentration of inducer significantly increased the percentage apoptotic cells for staurosporin and cycloheximide between the lowest and highest concentration using AVF (p<0.001). For both AVF and MS, increasing concentration of bleach decreased the percentage of apoptotic cells (p<0.05). Increasing the concentration of staurosporin resulted in an increase in apoptosis at 30 minutes and 3 hours. Both bleach and the freeze-thaw cycle induced necrosis at all time periods excluding 30 minutes for the freeze-thaw cycle (p<0.0001). Spearman rank correlation coefficients revealed a very high correlation for percentage apoptosis and necrosis between AVF and MS (r2 = 0.91, 95% CI 0.89 – 0.93). A high correlation was also present for AVF and HC (r2 = 0.75, 95% CI 0.69 – 0.79) and MS and HC (r2 = 0.76, 95% CI 0.71 – 0.81). The lower limit of the confidence intervals suggests there is some concern about the similarity between AVF, HC and MS, HC. The Bland and Altman statistical approach indicates that both AVF and MS are highly reproducible methods with minimal variation between the triplicate samples (AVF: 8.9%, 95% CI 6.25 – 11.6%, MS 7.9%, 95% CI 6 – 9.8%). The mean difference between the two methods is 6.7% (95% CI 3.89 – 9.42%). The 95% limits of agreement indicate that results from MS can be 8.7% below to 22% above results from AVF (95% CI -13.41 – 26.7%). These findings indicate that caspase activation may occur prior to phosphatidylserine externalization and visible nuclear changes, which is in accordance with previously published data. We discovered that actinomycin D induces significant and reproducible equine peripheral blood neutrophil apoptosis in a time dependant fashion. Similarly, necrosis results from a freeze-thaw cycle or high concentration of bleach and is suitable as a positive control for necrosis. Apoptosis was effectively detected using AVF assay and results indicate good correlation between AVF and MS with an acceptably low mean difference. MS could serve as an inexpensive, simple and quick on site method to rapidly verify results attained from AVF. Induction of apoptosis using the HC was not consistent and can not be recommended based on the results of this study. Future investigation aimed at evaluating assays multiplexed to the AVF which detect other aspects of the apoptotic pathway would lead to increased confidence of results and further evidence of the mode of cell death prior to undertaking clinical studies. / Master of Science

Thesis (PhD)--Stellenbosch University, 2003. / ENGLISH ABSTRACT: The aims of this study were to investigate genetic issues pertaining to the conservation of the Knysna seahorse, Hippocampus capensis, and to determine the phylogenetic placement of this endangered estuarine species among marine seahorses. This was accomplished by focusing on three aspects of the taxonomy: the interspecific level; the inter-population level; and the intra-population level. To determine which species are closely related to H. capensis, and how the evolutionary history of this lineage relates to that of other seahorses, sequence data derived from four gene fragments (the nuclear RPI and Aldolase and the mitochondrial 16S rRNA and cytochrome b genes) were used to determine the phylogenetic relationships among 30 species belonging to the genus Hippocampus. There were marked differences in the rate of evolution among these gene fragments, with Aldolase evolving the slowest and the mtDNA cytochrome b gene the fastest. Among individual partitions, the RPI gene recovered the highest number of nodes supported by >70% bootstrap values from parsimony analysis, and >95% posterior probabilities from Bayesian inference. The combined analysis based on 2317 nucleotides resulted in the most robust phylogeny. A distinct phylogenetic split was identified between the pygmy seahorse, H. bargibanti, and a clade including all other species. Three species from the western Pacific Ocean included in this study, namely H. bargibanti, H. breviceps, and H. abdominalis, occupy basal positions in the phylogeny. This and the high species richness in the region suggest that the genus probably originated in this region. There is also fairly strong molecular support for the remaining species being subdivided into three main evolutionary lineages: two West Pacific clades and a clade of species present in both the Indo-Pacific and the Atlantic Ocean, which includes H. capensis. The phylogeny obtained herein suggests that seahorses belonging to the latter clade colonised the Atlantic Ocean at least twice, once before the closure of the Tethyan Seaway, and once afterwards. Phylogenies reconstructed using mitochondrial DNA gene fragments (l6S rRNA, cytochrome band 382 bp of the rapidly evolving control region) indicate that H. capensis is closely related to an Indian Ocean lineage of H. kuda and a Red Sea lineage of H. fuscus. Other lineages closely associated with these taxa include H. kuda from the West Pacific, the East Atlantic species H. algiricus, the West Atlantic species H reidi, the East Pacific species H ingens, and the Hawaiian species H fisheri. No control region alleles were shared among H capensis and any of the marine seahorses, suggesting that the Knysna seahorse is phylogenetically distinct. The evolutionary history of H capensis, and the extent of gene flow between its three known populations, were investigated using control region sequences from 138 specimens. Most samples were obtained by taking fin clips; this method was studied on captive seahorses and no negative effects were found. Similarly high levels of genetic diversity were found in two of the wild populations (Knysna and Keurbooms Estuaries), whereas diversity in the third population (Swartvlei Estuary) was lower. Although most haplotypes are shared among at least two populations, based on the haplotype frequency distributions the three assemblages constitute distinct management units. The extant population structure of H capensis suggests that the Knysna seahorse originated in the large Knysna Estuary. The presence of seahorses in the two smaller estuaries is either the result of a vicariance event at the beginning of the present interglacial period, or colonisation of the estuaries via the sea, or a combination of the two. Population genetic parameters of the Knysna population and those of two populations of closely related marine seahorses (H kuda from the Philippines and H fuscus from the Red Sea) were similar, suggesting that the Knysna population is not genetically impoverished, despite its comparatively small area of occupancy. / DEUTSCHE ZUSAMMENFASSUNG: Die hier prasentierte wissenschaftliche Studie beschaftigte sich mit genetischen Themen relevant flïr den Artenschutz des Knysna Seepferds, Hippocampus capensis, und den phylogenetischen Beziehungen dieser ausschliesslich in Estuaren (Flussmtindungen) vorkommenden gefahrdeten Art mit den im Meer lebenden Seepferden. Die folgenden taxonomischen Einheiten wurden verglichen: Arten, Populationen und Sub-Populationen. Urn festzustellen, welche Arten nah mit H. capensis verwand sind, und wie die Evolution dieser Gruppe sich von der anderer Seepferdgruppen unterscheidet, wurden genetische Sequenzen von vier Genen (den nuklearen RPI und Aldolase und den mitochondrischen 16S rRNA und Cytochrom b Genen) von 30 Seepferdarten verwendet und phylogenetische Beziehungen rekonstruiert. Betrachtliche Unterschiede wurden festgestellt hinsichtlich der Geschwindigkeit in der Mutationen stattgefunden haben: Aldolase mutierte am langsamsten und Cytochrom b am schnellsten. Eine auf RPI Sequenzen basierende Phylogenie hatte die hëchste Anzahl von Gabelungspunkten, die sowohl von parsimonischen Analysen, als auch von bayesischer Inferenz untersttitzt wurden. Die robusteste Phylogenie wurde jedoch gefunden, wenn Sequenzen von allen vier Genen kombiniert wurden (im ganzen 2317 Nukleotide). Eine betrëchtliche genetische Distanz wurde zwischen dem Pygmaen-Seepferd, H. bargibanti, und einer Gruppe, die aus allen anderen Arten bestand, gefunden. Drei Arten vom westlichen Pazifik, namlich H. bargibanti, H. breviceps und H. abdominalis, hatten basale Positionen in der Phylogenie. Das, und der Artenreichtum dieser Region, sind Anzeichen daflïr, dass Seepferde mëglicherweise ursprtinglich aus dem westlichen Pazifik stammen. Es wurde weiterhin gefunden, dass alle tibrigen Seepferdarten in drei Hauptgruppen unterteilt werden kannen: die Verbreitungsgebiete zweier dieser Gruppen beschranken sich hauptsachlich auf den westlichen Pazifik, aber die dritte Gruppe kommt sowohl im Indo-Pazifik, also auch im Atlantik vor (H. capensis ist mit dieser letzteren Gruppe assoziiert). Es gibt gute Anzeichen dafllr, dass die Seepferde der letztgenannten Gruppe den Atlantik mindestens zweimal kolonisiert haben, einmal vor der Schliessung der tethyschen Seeverbindung, und einmal danach. Phylogenien, die ausschliesslich mit mitochondrischen Genen rekonstruiert wurden (16S rRNA, Cytochrom b und 382 Nukleotide der schnell-mutierenden Kontollregion), zeigen, dass H capensis sehr nah verwandt mit H kuda aus dem Indischen Ozean und H fuscus aus dem Roten Meer ist. Andere nah verwandte Arten sind H kuda from westlichen Pazifik, H algiricus vom ëstlichen Atlantik, H reidi vom westlichen Atlantik, Hingens vom ëstlichen Pazifik, sowie die in Hawaii vorkommende Art H fisheri. Keine der Kontrollregionallele, die in H capensis gefunden wurden, kamen in anderen Arten vor. Dies zeigt, dass das Knysna Seepferd eine eigenstandige Art ist, und Paarungen mit anderen Arten nicht vorkommen. Die Evolutionsgeschichte von H capensis, und das Ausmass von genetischem Austausch zwischen den drei Populationen dieser Art, wurden untersucht, indem Kontrollregionsequenzen von 138 Individuen analysiert wurden. Die meisten Proben stammten von Flossenschnitten; diese Methode wurde zuvor an in Gefangenschaft lebenden Seepferden ausprobiert, und es wurden keine negativen Folgeerscheinungen beobachtet. Genetische Diversitat war ungefahr gleich hoch in zwei der Populationen (Knysna und Keurbooms Estuare), aber eine deutlich niedrigere Diversitat wurde in der dritten Population gefunden (Swartvlei Estuar). Obwohl die meisten Allele in mindestens zwei Populationen gefunden wurden, sind die drei Populationen unterschiedliche genetische Einheiten, eine Schlussfolgerung, die hauptsachlich auf Unterschiede in der relativen Haufigkeit der Allele beruht. Die Populationsstruktur von H capensis deutet darauf hin, dass diese Art ihren Ursprung im Knysna Estuar hat. Die Prasenz von Seepferden in den beiden anderen Estuaren ist entweder das Resuitat von Vikarianz (eine Spaltung der urspri.inglichen Population) zu Beginn der jetzigen Interglazialzeit, oder Kolonisierung der Estuare durchs Meer, oder eine Kombination beider Szenarios. Populationsgenetische Parameter der Knysna Population und die zweier Populationen von nah verwandten Arten (H kuda aus den Philippinen und H fuscus aus dem Roten Meer) zeigten keine grossen Unterschiede. Dies deutet darauf hin, dass das Knysna Seepferd trotz seines vergleichbar kleinen Verbreitungsgebietes nicht unter geringer genetischer Diversitat leidet. / AFRIKAANSE OPSOMMING Die doelwitte van hierdie studie was om die Knysna seeperdjie, Hippocampus capensis, te ondersoek relatief tot die spesie se bewaring asook om die filogenetiese posisie van hierdie bedreigte estuariene spesie binne mariene seeperdjies te bepaal. Drie aspekte van die taksonomie word ondersoek: interspesie verwantskappe, interbevolking verwantskappe en intra-bevolking verwantskappe. Om te bepaal watter spesies na verwant is aan H capensis, asook om die evolusionêre geskiedenis van hierdie groep met die van ander groepe te vergelyk, word nukleotieddata van vier ONS fragmente (die nukleêre RPI intron en Aldolase, en die mitochondriale 16S rRNA en sitokroom b fragmente) van 30 spesies van die genus Hippocampus gebruik. Aansienlike verskille in die tempo van evolusionêre verandering tussen hierdie ONS fragmente word gevind: Aldolase was die stadigste en die mitochondriale sitokroom b die vinnigste. Die RPI intron het die meeste knoesteringe gehad wat ondersteun word deur hoë stewelvasgordnommers (>70%) van parsimoniese analises en hoë agterwaarskynlikheide (>95%) van Bayesiese gevolgtrekkinge. Die kombineerde analise wat 2317 nukleotiede ingesluit het, het die beste filogenie geproduseer. 'n Besliste filogenetise verdeling was gevind tussen die pigmee seeperdjie, H bargibanti, en 'n groep wat al die ander spesies ingesluit het. Drie spesies van die westelike Stille Oseaan wat in hierdie studie ingesluit is, H bargibanti, H breviceps en H abdominalis, neem primitiewe posisies in die filogenie in. Dit, en die hoë spesiesrykdom in daardie gebied dui aan dat dit moontlik is dat die genus in die westelike Stille Oseaan ontstaan het. Daar is ook taamlike goeie molekulêre ondersteuning dat al die ander spesies in drie evolusionêre hoofgroepe verdeel kan word: twee groepe wat hoofsaaklik in die westelike Stille Oseaan voorkom, en 'n groep van spesies wat in die Stille Oseaan, die Indiese Oseaan en in die Atlantiese Oseaan voorkom, wat H capensis insluit. Die filogenie wat hier gevind is dui aan dat seeperdjies van hierdie laas genoemde groep die Atlantiese Oseaan minste twee keer gekoloniseer het, een keer voor die sluiting van die Tetiese Seepad, en een keer daarna. Filogenies wat met mitochondriale ONS fragmente gerekonstrueer is (16S rRNA, sitokroom b en 382 nukleotide van die vinnig evolveerende kontrolestreek) dui aan dat H capensis na verwant is aan 'n groep van H kuda wat in die Indiese Oseaan voorkom en H fuscus van die Rooi See. Ander groepe wat na verwant is aan hierdie takson is H kuda van die westelike Stille Oseaan, H algiricus van die Oos Atlantiese Oseaan, H reidi van die Wes Atlantiese Oseaan, en die Hawaiise spesie H fisheri. Geen kontrolestreek allele was gedeel tussen H capensis en enige mariene seeperdj ie spesies; dit dui aan dat die Knysna seeperdjie filogeneties verskillend is. Die evolusionêre geskiedenis van H capensis, en die omvang van die genetiese interaksies tussen sy drie bekende bevolkings, word ondersoek met kontrolestreek nukleotieddata van 138 monsters. Die meeste van hierdie monsters was verkry deur vinknipsels; hierdie metode was getoets op seeperdjies in gevangenskap en geen negatiewe gevolge was gevind nie. Genetiese diversiteit was omtrent dieselfde in twee van die natuurlike bevolkings (Knysna en Keurbooms Estuariums), maar diversiteit in die derde bevolking (Swartvlei Estuarium) was laër. Alhoewel die meeste allele gedeel was tussen ten minste twee bevolkings, dui die verspreiding van allelfrekwensies aan dat die drie bevolkings aparte bestuurseenhede is. Die ekstante bevolkingsstruktuur van H capensis dui aan dat die Knysna seeperdjie in die groot Knysna Estuarium ontstaan het. Die teenwordigheid van seeperdjies in die twee kleiner estuariums is óf die resultaat van 'n vikariansie voorval aan die begin van hierdie interglasiale tydperk, óf kolonisasie van die estuariums deur die see, óf 'n kombinasie van albei. Bevolkingsgenetiese parameters van die Knysna bevolking en van twee bevolkings van na verwante seeperdjie spesies (H kuda van die Filippyne en H fuscus van die Rooi See) was soortgelyk, wat aandui dat die Knysna bevolking nie geneties verarm is nie, alhoewel dit 'n betreklik kleiner streek bewoon.

Call number: LD2668 .T4 1938 L51

Call number: LD2668 .T4 1986 D42 / Master of Science / Diagnostic Medicine/Pathobiology

No description available.