The flavin-containing monoamine oxidases (MAO) A and B catalyze the oxidative deamination of primary and secondary amines. The overall process involves a two electron oxidation of the amine to the iminium with concomitantreduction of the flavin. Based on extensive studies with a variety of chemical probes, Silverman and colleagues have proposed a catalytic pathway for the processing of amine substrates and inactivators by MAO-B that is initiated by a single electron transfer (SET) step from the nitrogen lone pair to the oxidized flavin followed by α-proton loss from the resulting amine radical cation that leads to a carbon radical. Subsequent transfer of the second electron leads to the reduced flavin and the iminium product. In the case of N-cyclopropylamines, the initially formed amine radical cation is proposed to undergo rapid ring opening to form a highly reactive primary carbon centered radical that is thought to be responsible for inactivation of the enzyme. In this thesis we have exploited the unique substrate and inactivator properties of 1,4-disubstituted tetrahydropyridine derivatives to probe the mechanism of MAO-B catalysis. Reports of the parkinsonian inducing neurotoxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) as a structurally unique substrate of MAO-B initiated these studies. Consistent with the SET pathway, the N-cyclopropyl analog of MPTP proved to be an efficient time and concentration dependent inactivator but not a substrate of MAO-B. On the other hand, the 4-benzyl-1-cyclopropyl analog is both a substrate and inactivator of MAO-B. These properties may not be consistent with the obligatory formation of a cyclopropylaminyl radicalcation intermediate. In an attempt to gain further insight into the mechanism associated with the MAO catalyzed oxidation of 1,4-disubstituted tetrahydropyridines, deuterium isotope effects studies on both the substrate and inactivation properties of the 4-benzyl-1- cyclopropyl derivative were undertaken. A series of 1-methyl- and 1-cyclopropyltetrahydropyridine derivatives bearing various heteroaro-matic groups at C-4 also have been examined. The MAO-B substrate properties, inactivator properties and partition ratios for these compounds together with preliminary results from chemical model studies are discussed in terms of the MAO-B catalytic pathway. / Ph. D.

Les recherches présentées dans ce manuscrit s’articulent autour de deux parties distinctes. La première partie concerne une étude mécanistique de la réaction de décomposition de l’acide formique (AF) photocatalysé par le Tetra-n-ButylAmmonium DecaTungstate (TBADT) et explore la réactivité de ce photocatalyseur envers l’AF. La deuxième partie de ces travaux se focalise sur l’étude de la réactivité radicalaire d’anions phosphorés et de leurs analogues chalcogénés. Dans un premier temps, nous nous sommes intéressés à exploiter la réactivité de phosphures-borane et des anions d’oxydes de phosphine pour la formation de liaisons C-P par photo-induction dans le visible. Dans un second temps, nous avons exploré la réactivité radicalaire et ionique des phosphures-borane chalcogénés, par une étude de leur structure et de leur réactivité. Ces propriétés ont été mises en application dans le cadre de réactions de photo-polymérisation radicalaire et de réduction de composés électrophiles. / This dissertation is organized in two distinct parts. The first one is a mechanistic investigation of the photocatalyzed reaction of decomposition of formic acid (AF) under mild conditions using Tetra-n-ButylAmmonium DecaTungstate (TBADT). The second part of this work revolve around the use and study of the radical reactivity of phosphorous anions and their chalcogenated analogues. Firstly, we used the radical reactivity of phosphido-borane and phosphine oxide anions for the formation of C-P bonds. In a last part, we explored the radical and ionic reactivity of chalcogenated phosphido-borane, by studying their structure and reactivity. These properties has been applied to radical photo-polymerization reactions and for the reduction of electrophiles.

No description available.

京都大学 / 新制・課程博士 / 博士(工学) / 甲第23925号 / 工博第5012号 / 新制||工||1782(附属図書館) / 京都大学大学院工学研究科合成・生物化学専攻 / (主査)教授 村上 正浩, 教授 杉野目 道紀, 教授 中尾 佳亮 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DFAM

The recent upsurge of degenerative diseases believed to be the result of oxidative stress has sparked an increased interest in utilizing the fundamental principles of physical organic chemistry to understand biological problems. Enzyme pathways can pose several experimental complications due to their complexity, therefore the small molecule probe approach can be utilized in an attempt understand the more complex enzyme mechanisms. The work described in this dissertation focuses on the use of N-cyclopropyl amines that have been used as probes to study the mechanism of monoamine oxidase (MAO) and cytochrome P-450 (cP-450). A photochemical model study of benzophenone triplet (3BP) with the MAO-B substrate 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) and two of its derivatives, 1-cyclopropyl-4-phenyl-1,2,3,6-tetrahydropyridine and (+/-)-[trans-2-phenylcyclopropyl-4-phenyl-1,2,3,6-tetrahydropyridine is presented in Chapter 2. The barrier for ring opening of aminyl radical cations derived from N-cyclopropyl derivatives of tertiary amines (such as MPTP) is expected to be low. Reactions of 3BP with all three compounds are very similar. The results suggest that the reaction between benzophenone triplet and tertiary aliphatic amines proceed via a simple hydrogen atom transfer reaction. Additionally these model examinations provide evidence that oxidations of N-cyclopropyl derivatives of MPTP catalyzed by MAO-B may not be consistent with a pure SET pathway. The chemistry of N-cyclopropyl amines has been used to study the mechanism of amine oxidations by cP-450. Until recently, the rate constant for these ring opening reactions has not been reported. Direct electrochemical examinations of N-cyclopropyl-N-methylaniline showed that the radical cation undergoes a unimolecular rearrangement consistent with a cyclopropyl ring opening reaction. Examination of both the direct and indirect electrochemical data showed that the oxidation potential N-cyclopropyl-N-methylaniline to be +0.528 V (0.1 M Ag⁺/Ag), and rate constant for ring opening of 4.1 x 10⁴ s⁻¹. These results are best explained by two phenomena: (i) a resonance effect in which the spin and charge of the radical cation in the ring closed form is delocalized into the benzene ring hindering the overall rate of the ring opening reaction, and/or (ii) the lowest energy conformation of the molecule does not meet the stereoelectronic requirements for a ring opening pathway. Therefore a new series of spiro cyclopropanes were designed to lock the cyclopropyl group into the appropriate bisected conformation. The electrochemical results reported herein show that the rate constant for ring opening of 1'-methyl-3',4'-dihydro-1'H-spiro[cyclopropane-1,2'-quinoline] and 6'-chloro-1'-methyl-3',4'-dihydro-1'H-spiro[cyclopropane-1,2'-quinoline] are 3.5 x 10² s⁻¹ and 4.1 x 10² s⁻¹ with redox potentials of 0.3 V and 0.366 V respectively. In order to examine a potential resonance effect a derivative of N-methyl-N-cyclopropylaniline was synthesized to provide a driving force for the ring opening reaction thereby accelerating the overall rate of the ring opening pathway. The electrochemical results show that the rate constant for ring opening of 4-chloro-N-methyl-N-(2-phenylcyclopropyl)aniline to be 1.7 x 10⁸ s⁻¹ . The formal oxidation potential (E°OX) of this substrate was determined to be 0.53 V. The lowered redox potentials of 1'-methyl-3',4'-dihydro-1'H-spiro[cyclopropane-1,2'-quinoline] and 6'-chloro-1'-methyl-3',4'-dihydro-1'H-spiro[cyclopropane-1,2'-quinoline] can be directly attributed to the electron donating character of the ortho alkyl group of the quinoline base structure of these spiro derivatives, and therefore the relative energy of the ring closed radical cations directly affects the rate of ring opening reactions. The relief of ring strain coupled with the formation of the highly resonance stabilized benzylic radical explains the rate increase for the ring opening reaction of 4-chloro-N-methyl-N-(2-phenylcyclopropyl)aniline. / Ph. D.

Oxidative processes are linked to a number of major disease states as well as the breakdown of many materials. Of particular importance are reactive oxygen species (ROS), as they are known to be endogenously produced in biological systems as well as exogenously produced through a variety of different means. In hopes of better understanding what controls the behavior of ROS, researchers have studied radical chemistry on a fundamental level. Fundamental knowledge of what contributes to oxidative processes can be extrapolated to more complex biological or macromolecular systems. Fundamental concepts and applied data (i.e. interaction of ROS with polymers, biomolecules, etc.) are critical to understanding the reactivity of ROS. A detailed review of the literature, focusing primarily on the hydroxyl radical (HO•) and hydrogen atom (H•) abstraction reactions, is presented in Chapter 1. Also reviewed herein is the literature concerning high density polyethylene (HDPE) degradation. Exposure to treated water systems is known to greatly reduce the lifetime of HDPE pipe. While there is no consensus on what leads to HDPE breakdown, evidence suggests oxidative processes are at play. The research which follows in Chapter 2 focuses on the reactivity of the hydroxyl radical and how it is controlled by its environment. The HO• has been thought to react instantaneously, approaching the diffusion controlled rate and showing little to no selectivity. Both experimental and calculational evidence suggest that some of the previous assumptions regarding hydroxyl radical reactivity are wrong and that it is decidedly less reactive in an aprotic polar solvent than in aqueous solution. These findings are explained on the basis of a polarized transition state that can be stabilized via the hydrogen bonding afforded by water. Experimental and calculational evidence also suggest that the degree of polarization in the transition state will determine the magnitude of this solvent effect. Chapter 3 discusses the results of HDPE degradation studies. While HDPE is an extremely stable polymer, exposure to chlorinated aqueous conditions severely reduces the lifetime of HDPE pipes. While much research exists detailing the mechanical breakdown and failure of these pipes under said conditions, a gap still exists in defining the species responsible or mechanism for this degradation. Experimental evidence put forth in this dissertation suggests that this is due to an auto-oxidative process initiated by free radicals in the chlorinated aqueous solution and propagated through singlet oxygen from the environment. A mechanism for HDPE degradation is proposed and discussed. Additionally two small molecules, 2,3-dichloro-2-methylbutane and 3-chloro-1,1-di-methylpropanol, have been suggested as HDPE byproducts. While the mechanism of formation for these products is still elusive, evidence concerning their identification and production in HDPE and PE oligomers is discussed. Finally, Chapter 4 deals with concluding remarks of the aforementioned work. Future work needed to enhance and further the results published herein is also addressed. / Ph. D.

No description available.

The first project in this dissertation presents a simplified and efficient protocol for synthesizing pyrrolines through 5-exo iminyl radical cyclizations. The microwave irradiation of O-Phenyloximes tethered to alkenes causes N-O homolysis resulting in iminyl radical generation, which subsequently undergoes 5-exo-trig cyclizations furnishing pyrrolines. This eliminates the need for toxic radical initiators (AIBN, benzoyl peroxide), propagating agents (Bu3SnH, (Me3Si)3SiH), and expensive catalysts or single-electron transfer (SET) cycles. We explored the scope of diverse traps and substrates for iminyl radical cyclizations. The iminyl radical cyclizations formed versatile pyrrolines with moderate to excellent yields. The diastereoselectivity also ranged from low to high. Moreover, these versatile pyrrolines were further transformed via various reactions, such as hydrogenation, allylation, dihydroxylation, and cross-metathesis. The second part of this project extends the scope of the non-redox iminyl-radical based approach to γ-C(sp3)−H ketone activation. The sequence of N-O homolysis triggered by microwave irradiation of O-phenyloximes, 1,5-hydrogen atom transfer (HAT), trapping of the radical intermediate, and in situ imine hydrolysis, ultimately leads to the formal γ-C–H functionalization of ketones. We achieved both C-O and C-C bond formation by using diverse O-phenyloxime substrates. This work's notable achievement was accomplishing γ-C–H activation of 1o carbon atoms, a feat that has not been attained using SET-based iminyl radical chemistry. The third part of this dissertation focuses on the influence that dehydroamino acids have on secondary structures. This project describes the synthesis of incipient 310 helical tetrapeptides containing dehydroamino acids. A bulky dehydroethylnorvaline-containing tetrapeptide was synthesized. Based on our published data, we speculated that dehydroethylnorvaline might increase peptide proteolytic stability.

The nitrate radical (NO3·) was first identified as early as the 1881, but its role in atmospheric oxidation has only been identified within recent decades. Due to its high one-electron reduction potential and its reactivity toward a diverse set of substrates, it dominates nighttime atmospheric oxidation and has since been the subject of much work. Despite this, studies on NO3· hydrogen atom transfer reactions have been somewhat neglected in favor of its more reactive oxidative pathways. The first section of the dissertation will highlight the role of substrate structure, solvent effects, and the presence of a polar transition state on NO3· hydrogen abstractions from alcohols, alkanes, and ethers. In this work the acquisition of absolute rate constants from previously unexamined substrates was analyzed alongside a curated list of common organic pollutants degraded through hydrogen atom abstraction. It was found that NO3· reacts with low selectivity through an early polarized transition state with a modest degree of charge transfer. Compared to the gas-phase, condensed-phase reactions experience rate enhancement—consistent with Kirkwood theory—as a result of the polarized transition state. These insights are then applied to abstractions by NO3· from carboxylic acids in the next section. It was found that the rate constants for abstraction of α-carbons were diminished through induction by the adjacent carbonyl compared to the activation seen for the aforementioned substrates. The deactivation of abstraction by the carbonyl was found to be dramatically reduced as the substrate's alkyl chain was lengthened and/or branched. This apparent change in mechanism coincides with hydrogen abstraction of the alkyl chain for sufficiently large carboxylic acids and rules out the possibility of concerted bond breaking elsewhere in the molecule. Finally, the dissertation will cover some additional projects related to the overall nature of the work including examination of the kinetics of radical clock systems when complexed with metal ions and the examination of a highly oxidative biosourced monomer. / Doctor of Philosophy / The nitrate radical (NO3·) was first identified as early as the 1881, but its role in the breakdown of atmospheric pollutants has only been identified within recent decades. Operating primarily at night, NO3· serves as a major atmospheric oxidant—it breaks down pollutants by reactions that involve the removal of electrons from those substrates. This chemistry is particularly important in understanding the consequences of an increasingly industrialized world and the subsequent short-term health and environmental implications. Geographically, these reactions will occur in large concentrations near locations that contribute greatly to atmospheric pollution, such as above coal-powered plants, heavily industrialized areas, above the canopy of large forests, and immediately behind the engines of airplanes as they move through the sky. The proximity of these locations to large population centers has caused the pollutants to greatly impact human health. These contaminants have been linked to several of the leading global causes of death, such as ischemic heart disease, stroke, and respiratory illnesses. The first section of the dissertation will focus on the role of pollutant structure, the medium in which the reaction occurs, and the development of a charged complex when NO3· reacts with alcohols, alkanes, and ethers. These substrates are often found as the result of incomplete combustion when burning fuel or as products of even more sustainable biodiesels. In this work the exact rate constants were found for substrates that were previously unexamined and compared with similar known reaction rates. It was found that NO3· has a low preference for what it reacts with and passes through a modestly charged complex early in the reaction. Compared to gaseous reactions, reactions in a liquid environment proceed faster due to the formation of a charged complex. This was then applied to reactions with carboxylic acids in the next section. Carboxylic acids are often found in large concentrations above the canopy of large forests resulting from the oxidation of isoprenes that are naturally released from broad-leaf trees. It was found that these reactions were slower than reactions with alkanes as the development of the charged complex was inhibited due to the presence of an adjacent dipole. When the carboxylic acid was longer and/or more branched, the formation of the charged complex was no longer inhibited as the reaction site moved further from the dipole. A change in reaction pathway was observed when the acids were sufficiently large. This ruled out the possibility of the reaction occurring simultaneously with a fracturing and rearrangement elsewhere. Finally, the dissertation will cover some additional projects that share some overlap with the work already described including the study of the rates of radical clock systems in the presence of metal ions and the study of naturally sourced monomers that are prone to losing electrons.

A highly regio- and diastereoselective approach towards complex 6-membered lactones was developed using allyl/propargyl benzyl ethers and delta keto esters. Crucially, the classical ET reagent SmI2 gave unsatisfactory results and it was necessary to develop and screen new Sm(II) cyclopentadienyl complexes to deliver high selectivity in the transformation. The methodology was extended to a one-pot approach to complex cycloheptanols using SmI2-H2O in a second stage of the process. Samarium(II) folding cascades were developed where simple, linear starting materials are converted to complex polycyclic architectures bearing multiple stereocentres. It was found that, depending on the sidechain in the starting material, it was possible to achieve four different pathways from the common radical intermediate. Crucially, transannular 1,5-HAT from tertiary and benzylic positions was observed to give diverse products. A proposed 1,5-HAT facilitated SmI2-mediated 6-membered lactone radical cyclisations for the first time without an activating proton donor additive. Enantioselective samarium(II) mediated cyclisation cascades were achieved, where simple beta keto esters are converted to complex polycyclic architectures bearing up to five contiguous stereocentres with high diastereo- and enantiocontrol. In the process, a simple and easy to prepare chiral aminodiol was employed which could be recycled after the reaction. Unprecedented, enantioselective transannular radical cascades allowed access to unique 3- dimensional scaffolds inaccessible by other synthetic methods.