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O gene ADAM23 está epigeneticamente silenciado em tumores de mama de estágios mais avançados e o seu silenciamento nesses tumores confere ao paciente um maior risco de desenvolvimento de metástases e um pior prognóstico. O silenciamento do gene ADAM23 na linhagem tumoral de mama MDA-MB-435 reduz a capacidade proliferativa e aumenta a capacidade migratória e invasiva das células em modelo tridimensional de cultura. No entanto, paradoxalmente, o silenciamento do gene ADAM23 nessa linhagem reduz a capacidade tumorigênica e metastática das células em ensaios in vivo utilizando animais imunodeficientes. Ensaios subsequentes utilizando misturas de células positivas e negativas para a expressão de ADAM23 revelaram que as células negativas estimulam a proliferação, migração e invasão das células positivas e que a heterogeneidade tumoral em relação à expressão de ADAM23 é importante para a disseminação e colonização metastática. Este trabalho teve como objetivo validar a associação entre o silenciamento do gene ADAM23 em tumores primários e a progressão tumoral, e também encontrar um modelo celular alternativo para a realização de ensaios funcionais que comprovassem o papel do gene ADAM23 na proliferação, migração, e invasão celular, bem como a existência de interação celular entre células ADAM23 positivas e negativas. A análise da expressão do gene ADAM23 em amostras de gliomas de diferentes estágios através de PCR em Tempo Real revelou que a expressão desse gene diminui ao longo da progressão tumoral e está bastante reduzida em tumores de grau avançado. Porém, ao contrário do observado em tumores de mama, o silenciamento do gene ADAM23 em gliomas não é causado por hipermetilação de sua região promotora nem por mutações em sua região codificante, ou perda de heterozigose. Infelizmente, não foi possível selecionar clones derivados da linhagem celular de glioblastoma U87MG com silenciamento estável do gene ADAM23 para a realização de ensaios funcionais. Aparentemente, o silenciamento de ADAM23 nessa linhagem resulta na parada do ciclo celular na fase G0/G1, impedindo a seleção de clones com silenciamento estável do gene. O mesmo fenômeno não foi observado na linhagem de melanoma SKmel-37, permitindo a seleção de clones com silenciamento estável de ADAM23 e a realização de ensaios funcionais. Curvas de proliferação em monocamada e ensaios de incorporação de MTT em modelo tridimensional in vitro demonstraram que o silencimento de ADAM23 na linhagem SKmel-37 diminui sua taxa de proliferação em 20-50%. Ensaios de citometria de fluxo demonstraram que o silenciamento de ADAM23 interfere na expressão das integrinas αvβ3 e αvβ5 na membrana celular, resultando em diminuição de 50% na afinidade aos ligantes de matriz e aumento significativo na capacidade de migração e invasão no colágeno. Ensaios in vitro e in vivo utilizando misturas de células SKmel-37 ADAM23 positivas e negativas também confirmaram a existência de interação entre os dois subtipos celulares. Ensaios in vitro de migração e invasão no colágeno revelaram que células ADAM23 negativas induzem a migração e a invasão de células positivas e, em ensaios de tumorigienese in vivo, observamos que os tumores formados a partir da injeção de uma mistura de células positivas e negativas apresentam crescimento semelhante ao dos tumores formados a partir da injeção de células ADAM23 positivas. / The ADAM23 gene is epigenetically silenced in breast tumors of more advanced stages and its silencing in these tumors gives the patient a greater risk of developing metastasis and a worse prognosis. The ADAM23 gene silencing in the MDA-MB-435 breast tumor cell line reduces the proliferative capacity and increases migratory and invasive abilities of cells in three-dimensional culture models. Yet, paradoxically, the ADAM23 gene silencing in this line reduces tumorigenic and metastatic abilities of cells in in vivo assays using immunodeficient animals. Subsequent tests using ADAM23 positive and negative cells mixtures revealed that negative cells stimulate proliferation, migration and invasion of positive cells and the heterogeneity of ADAM23 expression in tumors is important for the spreading and metastatic colonization. This study aimed to validate the association between ADAM23 gene silencing in primary tumors and tumor progression as well as find an alternative cellular model for performing functional tests to prove the role of the ADAM23 gene in proliferation, migration and cell invasion, and to prove the existence of cell interaction between ADAM23 positive and negative cells. The analysis of ADAM23 gene expression in samples from different stages of gliomas by RT-PCR revealed that the expression of this gene decreases over tumor progression and is greatly reduced in tumors of advanced degree. However, unlike that observed in breast tumors, the ADAM23 gene silencing in gliomas is not caused by hypermethylation of its promoter region or by mutations in its coding region, or by loss of heterozygosity. Unfortunately, it was not possible to select clones derived from the U87MG glioblastoma cell line with stable silencing of the gene ADAM23 for the functional testing. Apparently, the silencing of ADAM23 in this cell line results in cell cycle arrest in G0/G1 phase, preventing the selection of clones with stable gene silencing. The same phenomenon was not observed in SKmel-37 melanoma cell line, allowing selection of clones with stable silencing of ADAM23 and functional testing. Monolayer proliferation curves and in vitro MTT incorporation assays in three-dimensional models showed that ADAM23 silencing in the SKmel-37 cell line reduces their rate of proliferation by 20-50%. Flow cytometry assays demonstrated that ADAM23 silencing interferes with the expression of αvβ3 and αvβ5 integrins in the cell membrane, resulting in a 50% decrease in binding afinity to the matrix and a significant increase in migratory and invasive abilities on collagen. In vitro and in vivo assays using ADAM23 positive and negative SKmel-37 cell mixtures also confirmed the existence of interaction between the two cell subsets. In vitro invasion and migration on collagen assays revealed that ADAM23 negative cells induce migration and invasion of positive cells. Furthermore, in in vivo tumorigenic tests we found that tumors formed from injection of a mixture of positive and negative cells exhibit growth similar to the tumors formed after injection of ADAM23 positive cells.

O gene ADAM23 está epigeneticamente silenciado em tumores de mama de estágios mais avançados e o seu silenciamento nesses tumores confere ao paciente um maior risco de desenvolvimento de metástases e um pior prognóstico. O silenciamento do gene ADAM23 na linhagem tumoral de mama MDA-MB-435 reduz a capacidade proliferativa e aumenta a capacidade migratória e invasiva das células em modelo tridimensional de cultura. No entanto, paradoxalmente, o silenciamento do gene ADAM23 nessa linhagem reduz a capacidade tumorigênica e metastática das células em ensaios in vivo utilizando animais imunodeficientes. Ensaios subsequentes utilizando misturas de células positivas e negativas para a expressão de ADAM23 revelaram que as células negativas estimulam a proliferação, migração e invasão das células positivas e que a heterogeneidade tumoral em relação à expressão de ADAM23 é importante para a disseminação e colonização metastática. Este trabalho teve como objetivo validar a associação entre o silenciamento do gene ADAM23 em tumores primários e a progressão tumoral, e também encontrar um modelo celular alternativo para a realização de ensaios funcionais que comprovassem o papel do gene ADAM23 na proliferação, migração, e invasão celular, bem como a existência de interação celular entre células ADAM23 positivas e negativas. A análise da expressão do gene ADAM23 em amostras de gliomas de diferentes estágios através de PCR em Tempo Real revelou que a expressão desse gene diminui ao longo da progressão tumoral e está bastante reduzida em tumores de grau avançado. Porém, ao contrário do observado em tumores de mama, o silenciamento do gene ADAM23 em gliomas não é causado por hipermetilação de sua região promotora nem por mutações em sua região codificante, ou perda de heterozigose. Infelizmente, não foi possível selecionar clones derivados da linhagem celular de glioblastoma U87MG com silenciamento estável do gene ADAM23 para a realização de ensaios funcionais. Aparentemente, o silenciamento de ADAM23 nessa linhagem resulta na parada do ciclo celular na fase G0/G1, impedindo a seleção de clones com silenciamento estável do gene. O mesmo fenômeno não foi observado na linhagem de melanoma SKmel-37, permitindo a seleção de clones com silenciamento estável de ADAM23 e a realização de ensaios funcionais. Curvas de proliferação em monocamada e ensaios de incorporação de MTT em modelo tridimensional in vitro demonstraram que o silencimento de ADAM23 na linhagem SKmel-37 diminui sua taxa de proliferação em 20-50%. Ensaios de citometria de fluxo demonstraram que o silenciamento de ADAM23 interfere na expressão das integrinas αvβ3 e αvβ5 na membrana celular, resultando em diminuição de 50% na afinidade aos ligantes de matriz e aumento significativo na capacidade de migração e invasão no colágeno. Ensaios in vitro e in vivo utilizando misturas de células SKmel-37 ADAM23 positivas e negativas também confirmaram a existência de interação entre os dois subtipos celulares. Ensaios in vitro de migração e invasão no colágeno revelaram que células ADAM23 negativas induzem a migração e a invasão de células positivas e, em ensaios de tumorigienese in vivo, observamos que os tumores formados a partir da injeção de uma mistura de células positivas e negativas apresentam crescimento semelhante ao dos tumores formados a partir da injeção de células ADAM23 positivas. / The ADAM23 gene is epigenetically silenced in breast tumors of more advanced stages and its silencing in these tumors gives the patient a greater risk of developing metastasis and a worse prognosis. The ADAM23 gene silencing in the MDA-MB-435 breast tumor cell line reduces the proliferative capacity and increases migratory and invasive abilities of cells in three-dimensional culture models. Yet, paradoxically, the ADAM23 gene silencing in this line reduces tumorigenic and metastatic abilities of cells in in vivo assays using immunodeficient animals. Subsequent tests using ADAM23 positive and negative cells mixtures revealed that negative cells stimulate proliferation, migration and invasion of positive cells and the heterogeneity of ADAM23 expression in tumors is important for the spreading and metastatic colonization. This study aimed to validate the association between ADAM23 gene silencing in primary tumors and tumor progression as well as find an alternative cellular model for performing functional tests to prove the role of the ADAM23 gene in proliferation, migration and cell invasion, and to prove the existence of cell interaction between ADAM23 positive and negative cells. The analysis of ADAM23 gene expression in samples from different stages of gliomas by RT-PCR revealed that the expression of this gene decreases over tumor progression and is greatly reduced in tumors of advanced degree. However, unlike that observed in breast tumors, the ADAM23 gene silencing in gliomas is not caused by hypermethylation of its promoter region or by mutations in its coding region, or by loss of heterozygosity. Unfortunately, it was not possible to select clones derived from the U87MG glioblastoma cell line with stable silencing of the gene ADAM23 for the functional testing. Apparently, the silencing of ADAM23 in this cell line results in cell cycle arrest in G0/G1 phase, preventing the selection of clones with stable gene silencing. The same phenomenon was not observed in SKmel-37 melanoma cell line, allowing selection of clones with stable silencing of ADAM23 and functional testing. Monolayer proliferation curves and in vitro MTT incorporation assays in three-dimensional models showed that ADAM23 silencing in the SKmel-37 cell line reduces their rate of proliferation by 20-50%. Flow cytometry assays demonstrated that ADAM23 silencing interferes with the expression of αvβ3 and αvβ5 integrins in the cell membrane, resulting in a 50% decrease in binding afinity to the matrix and a significant increase in migratory and invasive abilities on collagen. In vitro and in vivo assays using ADAM23 positive and negative SKmel-37 cell mixtures also confirmed the existence of interaction between the two cell subsets. In vitro invasion and migration on collagen assays revealed that ADAM23 negative cells induce migration and invasion of positive cells. Furthermore, in in vivo tumorigenic tests we found that tumors formed from injection of a mixture of positive and negative cells exhibit growth similar to the tumors formed after injection of ADAM23 positive cells.

iii Abstract Cells have evolved multiple mechanisms of cellular motility ranging from the migration of large cell cohorts to specialized migration of individual cells. The wide range of invasion modes has been exploited by cancer cells to their advantage, which has rendered the metastatic process so difficult to defeat. To allow for a better understanding of cancer invasion plasticity, we have employed studies on cancer cells that adopt the proteolytically active, adhesion-dependent, elongated mesenchymal invasion mode, the protease-independent, low adhesion, rounded amoeboid invasion mode, or combination of both. To study invasion plasticity directly, we have established two model systems of the mesenchymal- amoeboid transition (MAT) that allow for regulated induction of MAT in 3D in vitro environments. Using these systems, MAT was induced in HT1080 fibrosarcoma cells and the acquisition of a motile, invasive amoeboid phenotype was confirmed. We then observed the mesenchymal and amoeboid invasion strategies within 3D collagen in more detail using a digital holographic microscope. Further, HT1080 cells before and after MAT were subject to high throughput proteomic and transcriptomic studies. Comparison of gene expression and protein levels of mesenchymal and amoeboid cells disclosed an inflammatory-like...

Our laboratory delineated a role for alternative pre-mRNA splicing (AS) in triple negative breast cancer (TNBC). We found the translational regulator cytosolic polyadenylation element binding protein 2 (CPEB2) which has two isoforms, CPEB2A and CPEB2B, is alternatively spliced during acquisition of anoikis resistance (AnR) and metastasis. The splicing event which determines the CPEB2 isoform is via inclusion/ exclusion of exon four in the mature mRNA transcript. The loss of CPEB2A with a concomitant increase in CPEB2B is required for TNBC cells to metastasize in vivo. We examined RNAseq profiles of TNBC cells which had CPEB2 isoforms specifically downregulated to examine the mechanism by which CPEB2 isoforms mediate opposing effects on cancer-related phenotypes. Downregulation of the CPEB2B isoform inhibited pathways driving the epithelial-to-mesenchymal transition (EMT) and hypoxic response, whereas downregulation of the CPEB2A isoform did not have this effect. Specifically, CPEB2B functioned as a translational activator of TWIST1 and HIF1a. Functional studies showed that specific downregulation of either HIF1α or TWIST1 inhibited the ability of CPEB2B to induce AnR and drive metastasis. The mechanism governing inclusion/ exclusion of exon 4 was determined to be serine/ arginine-rich splicing factor 3 (SRSF3). Binding of SRSF3 to a consensus sequence within CPEB2 exon 4 promoted its inclusion in the mature mRNA, and mutation of this sequence abolished association of SRSF3 with exon 4. SRSF3 expression was upregulated in TNBC cells upon acquisition of AnR correlating with a reduction in the CPEB2A/B ratio. Importantly, downregulation of SRSF3 by siRNA in these cells induced the exclusion of exon 4. Downregulation of SRSF3 also reversed the CPEB2A/B ratio in a wild-type CPEB2 exon 4 minigene construct, but not a mutant CPEB2 minigene with the SRSF3 RNA cis-element ablated. Physiologic studies demonstrated SRSF3 downregulation ablated AnR in TNBC cells, and was “rescued” by ectopic expression of CPEB2B. Importantly, biostatistical analysis of The Cancer Genome Atlas database showed a positive relationship between alterations in SRSF3 expression and lower overall survival in TNBC. Overall, this study demonstrates that SRSF3 modulates CPEB2 AS to induce the expression of the CPEB2B isoform that drives TNBC phenotypes correlating with aggressive human breast cancer.

Die Leber ist das am häufigsten von Metastasen betroffene Organ und kann daher als Modellorgan für metastatische Invasion dienen. Aus diesem Grund war es das Ziel dieser Dissertation Genexpressionsprofile zu verstehen und metastasierungs- sowie invasionsassoziierte Gene zu identifizieren. Differentielle Genexpression wurde in drei Systemen überprüft: Einem syngenen Mausmodell, einem Xenograftmodell sowie in fünf Gewebeproben von Patienten. Genexpressionprofile des syngenen Mausmodells und der Patientenproben zeigten, dass man die Invasionsfront als Ganzes betrachten, um möglichst viele über-lappende Gene zu finden. Globale Genexpressionstudien, die auf den Wirtsteil der Invasionsfront zeigten bemerkenswerte Überrepräsentation z. B. der „GO-terms“ „extrazelluläre Matrix“, Zellkommunikation“, „Antwort auf biotischen Stimulus“, Strukturmolekülaktivität“ und „Zellwachstum“. Marker der Aktivierung hepatischer Sternzellen überrepräsentiert in der invasionsfront, was die Durchführbarkeit einer Analyse differentieller Genexpression im genomweiten Rahmen anzeigt. Globale Genexpressionsstudien, auf den Tumorzellen in der in vitro Situation, in vivo und in der Invasionsfront zeigten insgesamt einen Anstieg zellulärer Spezialisierung von der in vitro zur Invasionsfront. Sezernierte proangiogenetische Chemokine zeigten eine Hochregulation in der Invasionsfront. Das beta catenin Gen war in der Invasionsfront 9.6 fach erhöht im Vergleich zur in vitro Situation. Die Überprüfung der transkriptionellen Aktivierung von beta catenin über die Prüfung der Promotoraktivität zeigte einen 18.4 fachen Anstieg in den Tumorzellen der Invasionsfront. Weiterhin war die Promotoraktivität (an Hand der Aktivität der mRNA des Alkalischen Phosphatase Reportergens) im Tumorinneren 3.5 fach höher als in der Zellkultur, was für einen transkriptionellen Mechanismus der beta catenin Regulation zusätzlich zu den posttranslationalen Mechanismen spricht. / Liver is most frequently populated by metastases and may therefore serve as a model organ for metastatic invasion. So the aim of this thesis is to understand the gene expression profiles and identify metastasis and invasion related genes. Differential gene expression was examined in three systems: A syngeneic mouse model, a xenograft model and five clinical specimens. Gene expression profiles of a syngenic mouse model and human clinical specimen revealed that the invasion front should be considered as a whole to find more overlapping potential target genes. Global gene expression studies on the host part of the invasion front, revealed a pronounced overrepresentation of GO-terms (e.g. “extracellular matrix”, “cell communication”, “response to biotic stimulus”, “structural molecule activity” and “cell growth”). Hepatic stellate cell activation markers were over-represented in the invasion front demonstrating the feasibility of a differential gene expression approach on a genome wide scale. Global gene expression studies of the tumor cells in vitro, in vivo and tumor part of the invasion front revealed an overall increase of cellular specialization from in vitro to the invasion front. Secreted angiogenic cytokines were found to be up regulated in the invasion front. Beta catenin gene of “cell adhesion” GO term was elevated 9.6 fold in invasion front compared to in vitro. Evaluation of transcriptional up-regulation of beta catenin by promoter activity showed an 18.4 fold increase in the tumor cells of the invasion front as compared to those from the faraway tumor. Promoter activity assessed by soluble human placental alkaline phosphatase reporter gene mRNA was 3.5 fold higher in the inner parts of the tumor than in vitro cells indicating a transcriptional mechanism of beta catenin regulation in addition to the posttranslational regulatory mechanisms.